Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:B38:A5
Extra
PDB:
ATOM 1 O3' C A 37 5.975 -18.554 13.726 1.00 79.11 O
ATOM 2 P A A 38 6.724 -17.875 12.478 1.00 79.08 P
ATOM 3 OP1 A A 38 8.073 -17.487 12.945 1.00 79.28 O
ATOM 4 OP2 A A 38 5.848 -16.866 11.835 1.00 79.21 O
ATOM 5 O5' A A 38 6.858 -19.108 11.470 1.00 77.94 O
ATOM 6 C5' A A 38 7.664 -20.229 11.822 1.00 77.02 C
ATOM 7 C4' A A 38 7.688 -21.254 10.703 1.00 76.34 C
ATOM 8 O4' A A 38 6.519 -22.109 10.792 1.00 75.74 O
ATOM 9 C3' A A 38 7.637 -20.689 9.289 1.00 76.46 C
ATOM 10 O3' A A 38 8.941 -20.278 8.867 1.00 77.00 O
ATOM 11 C2' A A 38 7.109 -21.894 8.518 1.00 75.44 C
ATOM 12 O2' A A 38 8.106 -22.869 8.268 1.00 74.69 O
ATOM 13 C1' A A 38 6.079 -22.462 9.491 1.00 74.85 C
ATOM 14 N9 A A 38 4.709 -21.981 9.280 1.00 74.23 N
ATOM 15 C8 A A 38 4.091 -20.945 9.925 1.00 74.64 C
ATOM 16 N7 A A 38 2.853 -20.733 9.543 1.00 74.57 N
ATOM 17 C5 A A 38 2.637 -21.699 8.575 1.00 73.77 C
ATOM 18 C6 A A 38 1.517 -22.011 7.774 1.00 73.38 C
ATOM 19 N6 A A 38 0.360 -21.345 7.830 1.00 73.51 N
ATOM 20 N1 A A 38 1.627 -23.039 6.906 1.00 72.99 N
ATOM 21 C2 A A 38 2.786 -23.710 6.847 1.00 72.55 C
ATOM 22 N3 A A 38 3.904 -23.506 7.546 1.00 72.64 N
ATOM 23 C4 A A 38 3.769 -22.478 8.402 1.00 73.44 C
ATOM 24 P A A 39 9.151 -19.029 7.881 1.00 77.99 P
ATOM 25 OP1 A A 39 10.607 -18.791 7.797 1.00 78.66 O
ATOM 26 OP2 A A 39 8.275 -17.906 8.277 1.00 78.22 O
ATOM 27 O5' A A 39 8.618 -19.591 6.481 1.00 78.41 O
TER
ATOM 1 O3' C B 4 10.870 -25.861 1.373 1.00 78.54 O
ATOM 2 P U B 5 11.114 -26.879 2.579 1.00 77.15 P
ATOM 3 OP1 U B 5 12.434 -26.598 3.194 1.00 76.44 O
ATOM 4 OP2 U B 5 10.817 -28.242 2.084 1.00 77.06 O
ATOM 5 O5' U B 5 9.962 -26.459 3.607 1.00 76.57 O
ATOM 6 C5' U B 5 10.000 -25.192 4.259 1.00 76.23 C
ATOM 7 C4' U B 5 8.689 -24.894 4.959 1.00 75.66 C
ATOM 8 O4' U B 5 7.592 -24.984 4.014 1.00 75.98 O
ATOM 9 C3' U B 5 8.291 -25.885 6.042 1.00 74.67 C
ATOM 10 O3' U B 5 8.981 -25.666 7.264 1.00 74.35 O
ATOM 11 C2' U B 5 6.799 -25.605 6.150 1.00 74.55 C
ATOM 12 O2' U B 5 6.516 -24.402 6.828 1.00 74.75 O
ATOM 13 C1' U B 5 6.434 -25.474 4.674 1.00 75.27 C
ATOM 14 N1 U B 5 5.947 -26.777 4.078 1.00 74.74 N
ATOM 15 C2 U B 5 4.611 -27.116 4.207 1.00 74.56 C
ATOM 16 O2 U B 5 3.794 -26.413 4.773 1.00 74.55 O
ATOM 17 N3 U B 5 4.253 -28.320 3.644 1.00 74.63 N
ATOM 18 C4 U B 5 5.080 -29.211 2.978 1.00 74.83 C
ATOM 19 O4 U B 5 4.624 -30.254 2.522 1.00 74.96 O
ATOM 20 C5 U B 5 6.457 -28.796 2.884 1.00 75.02 C
ATOM 21 C6 U B 5 6.826 -27.626 3.425 1.00 74.90 C
ATOM 22 P G B 6 9.498 -26.933 8.099 1.00 73.78 P
ATOM 23 OP1 G B 6 10.705 -26.504 8.842 1.00 73.77 O
ATOM 24 OP2 G B 6 9.558 -28.111 7.201 1.00 73.53 O
ATOM 25 O5' G B 6 8.318 -27.197 9.141 1.00 73.20 O
TER
ATOM 2 P A A 38 6.724 -17.875 12.478 1.00 79.08 P
ATOM 3 OP1 A A 38 8.073 -17.487 12.945 1.00 79.28 O
ATOM 4 OP2 A A 38 5.848 -16.866 11.835 1.00 79.21 O
ATOM 5 O5' A A 38 6.858 -19.108 11.470 1.00 77.94 O
ATOM 6 C5' A A 38 7.664 -20.229 11.822 1.00 77.02 C
ATOM 7 C4' A A 38 7.688 -21.254 10.703 1.00 76.34 C
ATOM 8 O4' A A 38 6.519 -22.109 10.792 1.00 75.74 O
ATOM 9 C3' A A 38 7.637 -20.689 9.289 1.00 76.46 C
ATOM 10 O3' A A 38 8.941 -20.278 8.867 1.00 77.00 O
ATOM 11 C2' A A 38 7.109 -21.894 8.518 1.00 75.44 C
ATOM 12 O2' A A 38 8.106 -22.869 8.268 1.00 74.69 O
ATOM 13 C1' A A 38 6.079 -22.462 9.491 1.00 74.85 C
ATOM 14 N9 A A 38 4.709 -21.981 9.280 1.00 74.23 N
ATOM 15 C8 A A 38 4.091 -20.945 9.925 1.00 74.64 C
ATOM 16 N7 A A 38 2.853 -20.733 9.543 1.00 74.57 N
ATOM 17 C5 A A 38 2.637 -21.699 8.575 1.00 73.77 C
ATOM 18 C6 A A 38 1.517 -22.011 7.774 1.00 73.38 C
ATOM 19 N6 A A 38 0.360 -21.345 7.830 1.00 73.51 N
ATOM 20 N1 A A 38 1.627 -23.039 6.906 1.00 72.99 N
ATOM 21 C2 A A 38 2.786 -23.710 6.847 1.00 72.55 C
ATOM 22 N3 A A 38 3.904 -23.506 7.546 1.00 72.64 N
ATOM 23 C4 A A 38 3.769 -22.478 8.402 1.00 73.44 C
ATOM 24 P A A 39 9.151 -19.029 7.881 1.00 77.99 P
ATOM 25 OP1 A A 39 10.607 -18.791 7.797 1.00 78.66 O
ATOM 26 OP2 A A 39 8.275 -17.906 8.277 1.00 78.22 O
ATOM 27 O5' A A 39 8.618 -19.591 6.481 1.00 78.41 O
TER
ATOM 1 O3' C B 4 10.870 -25.861 1.373 1.00 78.54 O
ATOM 2 P U B 5 11.114 -26.879 2.579 1.00 77.15 P
ATOM 3 OP1 U B 5 12.434 -26.598 3.194 1.00 76.44 O
ATOM 4 OP2 U B 5 10.817 -28.242 2.084 1.00 77.06 O
ATOM 5 O5' U B 5 9.962 -26.459 3.607 1.00 76.57 O
ATOM 6 C5' U B 5 10.000 -25.192 4.259 1.00 76.23 C
ATOM 7 C4' U B 5 8.689 -24.894 4.959 1.00 75.66 C
ATOM 8 O4' U B 5 7.592 -24.984 4.014 1.00 75.98 O
ATOM 9 C3' U B 5 8.291 -25.885 6.042 1.00 74.67 C
ATOM 10 O3' U B 5 8.981 -25.666 7.264 1.00 74.35 O
ATOM 11 C2' U B 5 6.799 -25.605 6.150 1.00 74.55 C
ATOM 12 O2' U B 5 6.516 -24.402 6.828 1.00 74.75 O
ATOM 13 C1' U B 5 6.434 -25.474 4.674 1.00 75.27 C
ATOM 14 N1 U B 5 5.947 -26.777 4.078 1.00 74.74 N
ATOM 15 C2 U B 5 4.611 -27.116 4.207 1.00 74.56 C
ATOM 16 O2 U B 5 3.794 -26.413 4.773 1.00 74.55 O
ATOM 17 N3 U B 5 4.253 -28.320 3.644 1.00 74.63 N
ATOM 18 C4 U B 5 5.080 -29.211 2.978 1.00 74.83 C
ATOM 19 O4 U B 5 4.624 -30.254 2.522 1.00 74.96 O
ATOM 20 C5 U B 5 6.457 -28.796 2.884 1.00 75.02 C
ATOM 21 C6 U B 5 6.826 -27.626 3.425 1.00 74.90 C
ATOM 22 P G B 6 9.498 -26.933 8.099 1.00 73.78 P
ATOM 23 OP1 G B 6 10.705 -26.504 8.842 1.00 73.77 O
ATOM 24 OP2 G B 6 9.558 -28.111 7.201 1.00 73.53 O
ATOM 25 O5' G B 6 8.318 -27.197 9.141 1.00 73.20 O
TER
Atoms:
OP1: (8.073,-17.487,12.945)
OP2: (5.848,-16.866,11.835)
C3': (7.637,-20.689,9.289)
C1': (6.079,-22.462,9.491)
C5': (7.664,-20.229,11.822)
O4': (6.519,-22.109,10.792)
C8: (4.091,-20.945,9.925)
O2': (8.106,-22.869,8.268)
C6: (1.517,-22.011,7.774)
C5: (2.637,-21.699,8.575)
C4: (3.769,-22.478,8.402)
P: (6.724,-17.875,12.478)
C4': (7.688,-21.254,10.703)
C2': (7.109,-21.894,8.518)
C2: (2.786,-23.710,6.847)
N1: (1.627,-23.039,6.906)
N3: (3.904,-23.506,7.546)
N6: (0.360,-21.345,7.830)
N7: (2.853,-20.733,9.543)
N9: (4.709,-21.981,9.280)
O5': (6.858,-19.108,11.470)
O3': (8.941,-20.278,8.867)
OP2: (5.848,-16.866,11.835)
C3': (7.637,-20.689,9.289)
C1': (6.079,-22.462,9.491)
C5': (7.664,-20.229,11.822)
O4': (6.519,-22.109,10.792)
C8: (4.091,-20.945,9.925)
O2': (8.106,-22.869,8.268)
C6: (1.517,-22.011,7.774)
C5: (2.637,-21.699,8.575)
C4: (3.769,-22.478,8.402)
P: (6.724,-17.875,12.478)
C4': (7.688,-21.254,10.703)
C2': (7.109,-21.894,8.518)
C2: (2.786,-23.710,6.847)
N1: (1.627,-23.039,6.906)
N3: (3.904,-23.506,7.546)
N6: (0.360,-21.345,7.830)
N7: (2.853,-20.733,9.543)
N9: (4.709,-21.981,9.280)
O5': (6.858,-19.108,11.470)
O3': (8.941,-20.278,8.867)
C4: (5.080,-29.211,2.978)
N3: (4.253,-28.320,3.644)
OP1: (12.434,-26.598,3.194)
OP2: (10.817,-28.242,2.084)
C2: (4.611,-27.116,4.207)
C1': (6.434,-25.474,4.674)
C3': (8.291,-25.885,6.042)
O5': (9.962,-26.459,3.607)
O4': (7.592,-24.984,4.014)
C5': (10.000,-25.192,4.259)
P: (11.114,-26.879,2.579)
C4': (8.689,-24.894,4.959)
C2': (6.799,-25.605,6.150)
O2': (6.516,-24.402,6.828)
N1: (5.947,-26.777,4.078)
O4: (4.624,-30.254,2.522)
O2: (3.794,-26.413,4.773)
C6: (6.826,-27.626,3.425)
C5: (6.457,-28.796,2.884)
O3': (8.981,-25.666,7.264)
N3: (4.253,-28.320,3.644)
OP1: (12.434,-26.598,3.194)
OP2: (10.817,-28.242,2.084)
C2: (4.611,-27.116,4.207)
C1': (6.434,-25.474,4.674)
C3': (8.291,-25.885,6.042)
O5': (9.962,-26.459,3.607)
O4': (7.592,-24.984,4.014)
C5': (10.000,-25.192,4.259)
P: (11.114,-26.879,2.579)
C4': (8.689,-24.894,4.959)
C2': (6.799,-25.605,6.150)
O2': (6.516,-24.402,6.828)
N1: (5.947,-26.777,4.078)
O4: (4.624,-30.254,2.522)
O2: (3.794,-26.413,4.773)
C6: (6.826,-27.626,3.425)
C5: (6.457,-28.796,2.884)
O3': (8.981,-25.666,7.264)
Image (generated by PyMOL):