Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0544:0543
Extra
PDB:
ATOM 1 O3' U A 543 -2.016 118.018 86.930 1.00 58.57 O
ATOM 2 P C A 544 -2.570 117.144 88.153 1.00 61.04 P
ATOM 3 OP1 C A 544 -1.475 116.231 88.580 1.00 62.73 O
ATOM 4 OP2 C A 544 -3.884 116.570 87.759 1.00 59.24 O
ATOM 5 O5' C A 544 -2.773 118.227 89.304 1.00 59.48 O
ATOM 6 C5' C A 544 -1.635 118.887 89.883 1.00 59.98 C
ATOM 7 C4' C A 544 -2.069 119.930 90.886 1.00 60.85 C
ATOM 8 O4' C A 544 -2.842 120.965 90.228 1.00 60.85 O
ATOM 9 C3' C A 544 -2.977 119.467 92.010 1.00 61.58 C
ATOM 10 O3' C A 544 -2.256 118.817 93.041 1.00 63.03 O
ATOM 11 C2' C A 544 -3.580 120.782 92.477 1.00 61.56 C
ATOM 12 O2' C A 544 -2.685 121.543 93.254 1.00 62.94 O
ATOM 13 C1' C A 544 -3.791 121.493 91.143 1.00 62.24 C
ATOM 14 N1 C A 544 -5.147 121.256 90.619 1.00 64.19 N
ATOM 15 C2 C A 544 -6.166 122.137 90.992 1.00 65.38 C
ATOM 16 O2 C A 544 -5.893 123.084 91.755 1.00 66.41 O
ATOM 17 N3 C A 544 -7.420 121.933 90.521 1.00 65.71 N
ATOM 18 C4 C A 544 -7.672 120.894 89.720 1.00 65.25 C
ATOM 19 N4 C A 544 -8.922 120.725 89.287 1.00 65.35 N
ATOM 20 C5 C A 544 -6.652 119.980 89.328 1.00 64.49 C
ATOM 21 C6 C A 544 -5.417 120.198 89.792 1.00 64.30 C
ATOM 22 P C A 545 -3.031 117.858 94.069 1.00 64.63 P
ATOM 23 OP1 C A 545 -1.989 117.265 94.945 1.00 64.07 O
ATOM 24 OP2 C A 545 -3.945 116.965 93.309 1.00 62.47 O
ATOM 25 O5' C A 545 -3.903 118.864 94.943 1.00 63.78 O
TER
ATOM 1 O3' G B 542 -4.176 120.355 81.909 1.00 51.30 O
ATOM 2 P U B 543 -4.327 118.765 81.752 1.00 54.79 P
ATOM 3 OP1 U B 543 -4.051 118.440 80.322 1.00 54.41 O
ATOM 4 OP2 U B 543 -5.617 118.354 82.362 1.00 55.14 O
ATOM 5 O5' U B 543 -3.145 118.180 82.641 1.00 51.90 O
ATOM 6 C5' U B 543 -3.328 117.963 84.038 1.00 53.13 C
ATOM 7 C4' U B 543 -2.635 119.041 84.824 1.00 54.89 C
ATOM 8 O4' U B 543 -3.176 120.334 84.456 1.00 55.58 O
ATOM 9 C3' U B 543 -2.860 118.975 86.321 1.00 56.67 C
ATOM 10 O3' U B 543 -2.016 118.018 86.930 1.00 58.57 O
ATOM 11 C2' U B 543 -2.573 120.403 86.757 1.00 57.41 C
ATOM 12 O2' U B 543 -1.201 120.725 86.860 1.00 59.78 O
ATOM 13 C1' U B 543 -3.182 121.184 85.593 1.00 58.67 C
ATOM 14 N1 U B 543 -4.565 121.598 85.878 1.00 61.99 N
ATOM 15 C2 U B 543 -4.745 122.591 86.828 1.00 63.89 C
ATOM 16 O2 U B 543 -3.818 123.110 87.428 1.00 65.24 O
ATOM 17 N3 U B 543 -6.050 122.948 87.058 1.00 64.75 N
ATOM 18 C4 U B 543 -7.169 122.424 86.459 1.00 64.47 C
ATOM 19 O4 U B 543 -8.276 122.841 86.792 1.00 64.63 O
ATOM 20 C5 U B 543 -6.906 121.399 85.492 1.00 63.98 C
ATOM 21 C6 U B 543 -5.646 121.031 85.240 1.00 62.36 C
ATOM 22 P C B 544 -2.570 117.144 88.153 1.00 61.04 P
ATOM 23 OP1 C B 544 -1.475 116.231 88.580 1.00 62.73 O
ATOM 24 OP2 C B 544 -3.884 116.570 87.759 1.00 59.24 O
ATOM 25 O5' C B 544 -2.773 118.227 89.304 1.00 59.48 O
TER
ATOM 2 P C A 544 -2.570 117.144 88.153 1.00 61.04 P
ATOM 3 OP1 C A 544 -1.475 116.231 88.580 1.00 62.73 O
ATOM 4 OP2 C A 544 -3.884 116.570 87.759 1.00 59.24 O
ATOM 5 O5' C A 544 -2.773 118.227 89.304 1.00 59.48 O
ATOM 6 C5' C A 544 -1.635 118.887 89.883 1.00 59.98 C
ATOM 7 C4' C A 544 -2.069 119.930 90.886 1.00 60.85 C
ATOM 8 O4' C A 544 -2.842 120.965 90.228 1.00 60.85 O
ATOM 9 C3' C A 544 -2.977 119.467 92.010 1.00 61.58 C
ATOM 10 O3' C A 544 -2.256 118.817 93.041 1.00 63.03 O
ATOM 11 C2' C A 544 -3.580 120.782 92.477 1.00 61.56 C
ATOM 12 O2' C A 544 -2.685 121.543 93.254 1.00 62.94 O
ATOM 13 C1' C A 544 -3.791 121.493 91.143 1.00 62.24 C
ATOM 14 N1 C A 544 -5.147 121.256 90.619 1.00 64.19 N
ATOM 15 C2 C A 544 -6.166 122.137 90.992 1.00 65.38 C
ATOM 16 O2 C A 544 -5.893 123.084 91.755 1.00 66.41 O
ATOM 17 N3 C A 544 -7.420 121.933 90.521 1.00 65.71 N
ATOM 18 C4 C A 544 -7.672 120.894 89.720 1.00 65.25 C
ATOM 19 N4 C A 544 -8.922 120.725 89.287 1.00 65.35 N
ATOM 20 C5 C A 544 -6.652 119.980 89.328 1.00 64.49 C
ATOM 21 C6 C A 544 -5.417 120.198 89.792 1.00 64.30 C
ATOM 22 P C A 545 -3.031 117.858 94.069 1.00 64.63 P
ATOM 23 OP1 C A 545 -1.989 117.265 94.945 1.00 64.07 O
ATOM 24 OP2 C A 545 -3.945 116.965 93.309 1.00 62.47 O
ATOM 25 O5' C A 545 -3.903 118.864 94.943 1.00 63.78 O
TER
ATOM 1 O3' G B 542 -4.176 120.355 81.909 1.00 51.30 O
ATOM 2 P U B 543 -4.327 118.765 81.752 1.00 54.79 P
ATOM 3 OP1 U B 543 -4.051 118.440 80.322 1.00 54.41 O
ATOM 4 OP2 U B 543 -5.617 118.354 82.362 1.00 55.14 O
ATOM 5 O5' U B 543 -3.145 118.180 82.641 1.00 51.90 O
ATOM 6 C5' U B 543 -3.328 117.963 84.038 1.00 53.13 C
ATOM 7 C4' U B 543 -2.635 119.041 84.824 1.00 54.89 C
ATOM 8 O4' U B 543 -3.176 120.334 84.456 1.00 55.58 O
ATOM 9 C3' U B 543 -2.860 118.975 86.321 1.00 56.67 C
ATOM 10 O3' U B 543 -2.016 118.018 86.930 1.00 58.57 O
ATOM 11 C2' U B 543 -2.573 120.403 86.757 1.00 57.41 C
ATOM 12 O2' U B 543 -1.201 120.725 86.860 1.00 59.78 O
ATOM 13 C1' U B 543 -3.182 121.184 85.593 1.00 58.67 C
ATOM 14 N1 U B 543 -4.565 121.598 85.878 1.00 61.99 N
ATOM 15 C2 U B 543 -4.745 122.591 86.828 1.00 63.89 C
ATOM 16 O2 U B 543 -3.818 123.110 87.428 1.00 65.24 O
ATOM 17 N3 U B 543 -6.050 122.948 87.058 1.00 64.75 N
ATOM 18 C4 U B 543 -7.169 122.424 86.459 1.00 64.47 C
ATOM 19 O4 U B 543 -8.276 122.841 86.792 1.00 64.63 O
ATOM 20 C5 U B 543 -6.906 121.399 85.492 1.00 63.98 C
ATOM 21 C6 U B 543 -5.646 121.031 85.240 1.00 62.36 C
ATOM 22 P C B 544 -2.570 117.144 88.153 1.00 61.04 P
ATOM 23 OP1 C B 544 -1.475 116.231 88.580 1.00 62.73 O
ATOM 24 OP2 C B 544 -3.884 116.570 87.759 1.00 59.24 O
ATOM 25 O5' C B 544 -2.773 118.227 89.304 1.00 59.48 O
TER
Atoms:
C2: (-6.166,122.137,90.992)
OP1: (-1.475,116.231,88.580)
OP2: (-3.884,116.570,87.759)
C4: (-7.672,120.894,89.720)
O5': (-2.773,118.227,89.304)
C3': (-2.977,119.467,92.010)
C1': (-3.791,121.493,91.143)
O4': (-2.842,120.965,90.228)
C5': (-1.635,118.887,89.883)
P: (-2.570,117.144,88.153)
O2: (-5.893,123.084,91.755)
C4': (-2.069,119.930,90.886)
C2': (-3.580,120.782,92.477)
O2': (-2.685,121.543,93.254)
N1: (-5.147,121.256,90.619)
N3: (-7.420,121.933,90.521)
N4: (-8.922,120.725,89.287)
C6: (-5.417,120.198,89.792)
C5: (-6.652,119.980,89.328)
O3': (-2.256,118.817,93.041)
OP1: (-1.475,116.231,88.580)
OP2: (-3.884,116.570,87.759)
C4: (-7.672,120.894,89.720)
O5': (-2.773,118.227,89.304)
C3': (-2.977,119.467,92.010)
C1': (-3.791,121.493,91.143)
O4': (-2.842,120.965,90.228)
C5': (-1.635,118.887,89.883)
P: (-2.570,117.144,88.153)
O2: (-5.893,123.084,91.755)
C4': (-2.069,119.930,90.886)
C2': (-3.580,120.782,92.477)
O2': (-2.685,121.543,93.254)
N1: (-5.147,121.256,90.619)
N3: (-7.420,121.933,90.521)
N4: (-8.922,120.725,89.287)
C6: (-5.417,120.198,89.792)
C5: (-6.652,119.980,89.328)
O3': (-2.256,118.817,93.041)
C4: (-7.169,122.424,86.459)
N3: (-6.050,122.948,87.058)
OP1: (-4.051,118.440,80.322)
OP2: (-5.617,118.354,82.362)
C2: (-4.745,122.591,86.828)
C1': (-3.182,121.184,85.593)
C3': (-2.860,118.975,86.321)
O5': (-3.145,118.180,82.641)
O4': (-3.176,120.334,84.456)
C5': (-3.328,117.963,84.038)
P: (-4.327,118.765,81.752)
C4': (-2.635,119.041,84.824)
C2': (-2.573,120.403,86.757)
O2': (-1.201,120.725,86.860)
N1: (-4.565,121.598,85.878)
O4: (-8.276,122.841,86.792)
O2: (-3.818,123.110,87.428)
C6: (-5.646,121.031,85.240)
C5: (-6.906,121.399,85.492)
O3': (-2.016,118.018,86.930)
N3: (-6.050,122.948,87.058)
OP1: (-4.051,118.440,80.322)
OP2: (-5.617,118.354,82.362)
C2: (-4.745,122.591,86.828)
C1': (-3.182,121.184,85.593)
C3': (-2.860,118.975,86.321)
O5': (-3.145,118.180,82.641)
O4': (-3.176,120.334,84.456)
C5': (-3.328,117.963,84.038)
P: (-4.327,118.765,81.752)
C4': (-2.635,119.041,84.824)
C2': (-2.573,120.403,86.757)
O2': (-1.201,120.725,86.860)
N1: (-4.565,121.598,85.878)
O4: (-8.276,122.841,86.792)
O2: (-3.818,123.110,87.428)
C6: (-5.646,121.031,85.240)
C5: (-6.906,121.399,85.492)
O3': (-2.016,118.018,86.930)
Image (generated by PyMOL):