Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DK1:B11:B8
Extra
PDB:
ATOM 1 O3' C A 10 -18.015 28.201 7.258 1.00 68.20 O
ATOM 2 P G A 11 -17.243 26.877 6.788 1.00 78.12 P
ATOM 3 OP1 G A 11 -18.267 25.911 6.315 1.00 77.41 O
ATOM 4 OP2 G A 11 -16.290 26.479 7.861 1.00 76.40 O
ATOM 5 O5' G A 11 -16.387 27.350 5.532 1.00 76.04 O
ATOM 6 C5' G A 11 -15.566 28.536 5.585 1.00 65.61 C
ATOM 7 C4' G A 11 -15.493 29.162 4.212 1.00 67.74 C
ATOM 8 O4' G A 11 -16.838 29.436 3.746 1.00 57.05 O
ATOM 9 C3' G A 11 -14.777 30.502 4.110 1.00 63.46 C
ATOM 10 O3' G A 11 -13.384 30.260 3.912 1.00 62.02 O
ATOM 11 C2' G A 11 -15.378 31.098 2.834 1.00 52.76 C
ATOM 12 O2' G A 11 -14.718 30.602 1.695 1.00 55.34 O
ATOM 13 C1' G A 11 -16.800 30.518 2.840 1.00 51.25 C
ATOM 14 N9 G A 11 -17.921 31.407 3.131 1.00 54.22 N
ATOM 15 C8 G A 11 -18.962 31.694 2.283 1.00 55.97 C
ATOM 16 N7 G A 11 -19.879 32.444 2.832 1.00 59.45 N
ATOM 17 C5 G A 11 -19.409 32.682 4.115 1.00 51.81 C
ATOM 18 C6 G A 11 -19.992 33.407 5.179 1.00 54.42 C
ATOM 19 O6 G A 11 -21.091 33.955 5.216 1.00 48.25 O
ATOM 20 N1 G A 11 -19.161 33.441 6.294 1.00 53.27 N
ATOM 21 C2 G A 11 -17.934 32.833 6.378 1.00 50.64 C
ATOM 22 N2 G A 11 -17.270 33.011 7.525 1.00 47.41 N
ATOM 23 N3 G A 11 -17.396 32.111 5.405 1.00 49.27 N
ATOM 24 C4 G A 11 -18.183 32.080 4.308 1.00 51.65 C
ATOM 25 P G A 12 -12.278 31.142 4.675 1.00 64.85 P
ATOM 26 OP1 G A 12 -11.001 30.970 3.940 1.00 60.31 O
ATOM 27 OP2 G A 12 -12.344 30.818 6.120 1.00 72.44 O
ATOM 28 O5' G A 12 -12.730 32.652 4.466 1.00 63.10 O
TER
ATOM 1 O3' C B 7 -24.716 40.923 10.581 1.00 64.17 O
ATOM 2 P U B 8 -25.419 39.483 10.776 1.00 76.64 P
ATOM 3 OP1 U B 8 -26.797 39.602 10.237 1.00 82.83 O
ATOM 4 OP2 U B 8 -25.211 38.989 12.161 1.00 68.16 O
ATOM 5 O5' U B 8 -24.602 38.525 9.807 1.00 57.49 O
ATOM 6 C5' U B 8 -24.599 38.771 8.397 1.00 65.47 C
ATOM 7 C4' U B 8 -23.804 37.712 7.700 1.00 59.66 C
ATOM 8 O4' U B 8 -22.394 37.935 7.935 1.00 72.04 O
ATOM 9 C3' U B 8 -24.040 36.321 8.243 1.00 66.71 C
ATOM 10 O3' U B 8 -25.246 35.757 7.736 1.00 69.08 O
ATOM 11 C2' U B 8 -22.781 35.598 7.793 1.00 58.28 C
ATOM 12 O2' U B 8 -22.824 35.248 6.436 1.00 63.44 O
ATOM 13 C1' U B 8 -21.724 36.688 7.992 1.00 67.97 C
ATOM 14 N1 U B 8 -21.066 36.567 9.299 1.00 55.37 N
ATOM 15 C2 U B 8 -19.910 35.832 9.355 1.00 55.83 C
ATOM 16 O2 U B 8 -19.366 35.384 8.360 1.00 57.11 O
ATOM 17 N3 U B 8 -19.406 35.643 10.617 1.00 66.70 N
ATOM 18 C4 U B 8 -19.926 36.129 11.799 1.00 65.69 C
ATOM 19 O4 U B 8 -19.430 35.775 12.872 1.00 69.79 O
ATOM 20 C5 U B 8 -21.092 36.937 11.643 1.00 65.26 C
ATOM 21 C6 U B 8 -21.607 37.126 10.426 1.00 61.72 C
ATOM 22 P U B 9 -25.846 34.422 8.404 1.00 73.82 P
ATOM 23 OP1 U B 9 -27.221 34.701 8.877 1.00 54.73 O
ATOM 24 OP2 U B 9 -24.853 33.884 9.361 1.00 75.12 O
ATOM 25 O5' U B 9 -25.894 33.424 7.168 1.00 57.43 O
TER
ATOM 2 P G A 11 -17.243 26.877 6.788 1.00 78.12 P
ATOM 3 OP1 G A 11 -18.267 25.911 6.315 1.00 77.41 O
ATOM 4 OP2 G A 11 -16.290 26.479 7.861 1.00 76.40 O
ATOM 5 O5' G A 11 -16.387 27.350 5.532 1.00 76.04 O
ATOM 6 C5' G A 11 -15.566 28.536 5.585 1.00 65.61 C
ATOM 7 C4' G A 11 -15.493 29.162 4.212 1.00 67.74 C
ATOM 8 O4' G A 11 -16.838 29.436 3.746 1.00 57.05 O
ATOM 9 C3' G A 11 -14.777 30.502 4.110 1.00 63.46 C
ATOM 10 O3' G A 11 -13.384 30.260 3.912 1.00 62.02 O
ATOM 11 C2' G A 11 -15.378 31.098 2.834 1.00 52.76 C
ATOM 12 O2' G A 11 -14.718 30.602 1.695 1.00 55.34 O
ATOM 13 C1' G A 11 -16.800 30.518 2.840 1.00 51.25 C
ATOM 14 N9 G A 11 -17.921 31.407 3.131 1.00 54.22 N
ATOM 15 C8 G A 11 -18.962 31.694 2.283 1.00 55.97 C
ATOM 16 N7 G A 11 -19.879 32.444 2.832 1.00 59.45 N
ATOM 17 C5 G A 11 -19.409 32.682 4.115 1.00 51.81 C
ATOM 18 C6 G A 11 -19.992 33.407 5.179 1.00 54.42 C
ATOM 19 O6 G A 11 -21.091 33.955 5.216 1.00 48.25 O
ATOM 20 N1 G A 11 -19.161 33.441 6.294 1.00 53.27 N
ATOM 21 C2 G A 11 -17.934 32.833 6.378 1.00 50.64 C
ATOM 22 N2 G A 11 -17.270 33.011 7.525 1.00 47.41 N
ATOM 23 N3 G A 11 -17.396 32.111 5.405 1.00 49.27 N
ATOM 24 C4 G A 11 -18.183 32.080 4.308 1.00 51.65 C
ATOM 25 P G A 12 -12.278 31.142 4.675 1.00 64.85 P
ATOM 26 OP1 G A 12 -11.001 30.970 3.940 1.00 60.31 O
ATOM 27 OP2 G A 12 -12.344 30.818 6.120 1.00 72.44 O
ATOM 28 O5' G A 12 -12.730 32.652 4.466 1.00 63.10 O
TER
ATOM 1 O3' C B 7 -24.716 40.923 10.581 1.00 64.17 O
ATOM 2 P U B 8 -25.419 39.483 10.776 1.00 76.64 P
ATOM 3 OP1 U B 8 -26.797 39.602 10.237 1.00 82.83 O
ATOM 4 OP2 U B 8 -25.211 38.989 12.161 1.00 68.16 O
ATOM 5 O5' U B 8 -24.602 38.525 9.807 1.00 57.49 O
ATOM 6 C5' U B 8 -24.599 38.771 8.397 1.00 65.47 C
ATOM 7 C4' U B 8 -23.804 37.712 7.700 1.00 59.66 C
ATOM 8 O4' U B 8 -22.394 37.935 7.935 1.00 72.04 O
ATOM 9 C3' U B 8 -24.040 36.321 8.243 1.00 66.71 C
ATOM 10 O3' U B 8 -25.246 35.757 7.736 1.00 69.08 O
ATOM 11 C2' U B 8 -22.781 35.598 7.793 1.00 58.28 C
ATOM 12 O2' U B 8 -22.824 35.248 6.436 1.00 63.44 O
ATOM 13 C1' U B 8 -21.724 36.688 7.992 1.00 67.97 C
ATOM 14 N1 U B 8 -21.066 36.567 9.299 1.00 55.37 N
ATOM 15 C2 U B 8 -19.910 35.832 9.355 1.00 55.83 C
ATOM 16 O2 U B 8 -19.366 35.384 8.360 1.00 57.11 O
ATOM 17 N3 U B 8 -19.406 35.643 10.617 1.00 66.70 N
ATOM 18 C4 U B 8 -19.926 36.129 11.799 1.00 65.69 C
ATOM 19 O4 U B 8 -19.430 35.775 12.872 1.00 69.79 O
ATOM 20 C5 U B 8 -21.092 36.937 11.643 1.00 65.26 C
ATOM 21 C6 U B 8 -21.607 37.126 10.426 1.00 61.72 C
ATOM 22 P U B 9 -25.846 34.422 8.404 1.00 73.82 P
ATOM 23 OP1 U B 9 -27.221 34.701 8.877 1.00 54.73 O
ATOM 24 OP2 U B 9 -24.853 33.884 9.361 1.00 75.12 O
ATOM 25 O5' U B 9 -25.894 33.424 7.168 1.00 57.43 O
TER
Atoms:
OP1: (-18.267,25.911,6.315)
OP2: (-16.290,26.479,7.861)
C3': (-14.777,30.502,4.110)
C1': (-16.800,30.518,2.840)
C5': (-15.566,28.536,5.585)
O6: (-21.091,33.955,5.216)
O4': (-16.838,29.436,3.746)
C8: (-18.962,31.694,2.283)
C2: (-17.934,32.833,6.378)
C6: (-19.992,33.407,5.179)
C5: (-19.409,32.682,4.115)
C4: (-18.183,32.080,4.308)
P: (-17.243,26.877,6.788)
C4': (-15.493,29.162,4.212)
C2': (-15.378,31.098,2.834)
O2': (-14.718,30.602,1.695)
N1: (-19.161,33.441,6.294)
N2: (-17.270,33.011,7.525)
N3: (-17.396,32.111,5.405)
N7: (-19.879,32.444,2.832)
N9: (-17.921,31.407,3.131)
O5': (-16.387,27.350,5.532)
O3': (-13.384,30.260,3.912)
OP2: (-16.290,26.479,7.861)
C3': (-14.777,30.502,4.110)
C1': (-16.800,30.518,2.840)
C5': (-15.566,28.536,5.585)
O6: (-21.091,33.955,5.216)
O4': (-16.838,29.436,3.746)
C8: (-18.962,31.694,2.283)
C2: (-17.934,32.833,6.378)
C6: (-19.992,33.407,5.179)
C5: (-19.409,32.682,4.115)
C4: (-18.183,32.080,4.308)
P: (-17.243,26.877,6.788)
C4': (-15.493,29.162,4.212)
C2': (-15.378,31.098,2.834)
O2': (-14.718,30.602,1.695)
N1: (-19.161,33.441,6.294)
N2: (-17.270,33.011,7.525)
N3: (-17.396,32.111,5.405)
N7: (-19.879,32.444,2.832)
N9: (-17.921,31.407,3.131)
O5': (-16.387,27.350,5.532)
O3': (-13.384,30.260,3.912)
C4: (-19.926,36.129,11.799)
N3: (-19.406,35.643,10.617)
OP1: (-26.797,39.602,10.237)
OP2: (-25.211,38.989,12.161)
C2: (-19.910,35.832,9.355)
C1': (-21.724,36.688,7.992)
C3': (-24.040,36.321,8.243)
O5': (-24.602,38.525,9.807)
O4': (-22.394,37.935,7.935)
C5': (-24.599,38.771,8.397)
P: (-25.419,39.483,10.776)
C4': (-23.804,37.712,7.700)
C2': (-22.781,35.598,7.793)
O2': (-22.824,35.248,6.436)
N1: (-21.066,36.567,9.299)
O4: (-19.430,35.775,12.872)
O2: (-19.366,35.384,8.360)
C6: (-21.607,37.126,10.426)
C5: (-21.092,36.937,11.643)
O3': (-25.246,35.757,7.736)
N3: (-19.406,35.643,10.617)
OP1: (-26.797,39.602,10.237)
OP2: (-25.211,38.989,12.161)
C2: (-19.910,35.832,9.355)
C1': (-21.724,36.688,7.992)
C3': (-24.040,36.321,8.243)
O5': (-24.602,38.525,9.807)
O4': (-22.394,37.935,7.935)
C5': (-24.599,38.771,8.397)
P: (-25.419,39.483,10.776)
C4': (-23.804,37.712,7.700)
C2': (-22.781,35.598,7.793)
O2': (-22.824,35.248,6.436)
N1: (-21.066,36.567,9.299)
O4: (-19.430,35.775,12.872)
O2: (-19.366,35.384,8.360)
C6: (-21.607,37.126,10.426)
C5: (-21.092,36.937,11.643)
O3': (-25.246,35.757,7.736)
Image (generated by PyMOL):