Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A16:A53
Extra
PDB:
ATOM 1 P G A 16 0.097 15.393 -36.306 1.00 29.37 P
ATOM 2 OP1 G A 16 0.807 14.635 -37.330 1.00 29.55 O
ATOM 3 OP2 G A 16 0.540 15.295 -34.872 1.00 29.69 O
ATOM 4 O5' G A 16 0.045 16.959 -36.702 1.00 28.42 O
ATOM 5 C5' G A 16 0.307 16.939 -38.136 1.00 27.02 C
ATOM 6 C4' G A 16 1.677 17.540 -38.299 1.00 25.70 C
ATOM 7 O4' G A 16 2.667 16.969 -37.494 1.00 24.67 O
ATOM 8 C3' G A 16 2.161 17.471 -39.747 1.00 25.40 C
ATOM 9 O3' G A 16 2.650 18.732 -40.225 1.00 25.74 O
ATOM 10 C2' G A 16 3.184 16.388 -39.638 1.00 24.87 C
ATOM 11 O2' G A 16 3.997 16.319 -40.757 1.00 24.93 O
ATOM 12 C1' G A 16 3.827 16.713 -38.286 1.00 23.87 C
ATOM 13 N9 G A 16 4.680 15.570 -37.958 1.00 22.96 N
ATOM 14 C8 G A 16 4.333 14.241 -37.985 1.00 22.59 C
ATOM 15 N7 G A 16 5.299 13.433 -37.671 1.00 22.47 N
ATOM 16 C5 G A 16 6.357 14.280 -37.398 1.00 22.30 C
ATOM 17 C6 G A 16 7.693 13.995 -37.002 1.00 22.28 C
ATOM 18 O6 G A 16 8.188 12.882 -36.798 1.00 22.55 O
ATOM 19 N1 G A 16 8.472 15.088 -36.838 1.00 22.12 N
ATOM 20 C2 G A 16 8.006 16.348 -37.043 1.00 22.35 C
ATOM 21 N2 G A 16 8.921 17.323 -36.838 1.00 22.57 N
ATOM 22 N3 G A 16 6.778 16.664 -37.412 1.00 22.47 N
ATOM 23 C4 G A 16 6.004 15.580 -37.576 1.00 22.43 C
ATOM 24 P G A 17 1.408 19.474 -41.104 1.00 26.00 P
ATOM 25 OP1 G A 17 0.355 19.922 -40.152 1.00 26.10 O
ATOM 26 OP2 G A 17 0.881 18.319 -41.861 1.00 25.92 O
ATOM 27 O5' G A 17 2.320 20.662 -41.658 1.00 26.62 O
TER
ATOM 1 O3' A B 52 15.210 8.598 -35.227 1.00 22.22 O
ATOM 2 P U B 53 16.160 9.474 -36.306 1.00 22.70 P
ATOM 3 OP1 U B 53 16.489 8.351 -37.248 1.00 22.75 O
ATOM 4 OP2 U B 53 17.325 9.878 -35.487 1.00 22.86 O
ATOM 5 O5' U B 53 15.096 10.548 -36.784 1.00 22.48 O
ATOM 6 C5' U B 53 14.107 9.760 -37.521 1.00 23.00 C
ATOM 7 C4' U B 53 12.964 10.656 -37.876 1.00 23.41 C
ATOM 8 O4' U B 53 12.469 11.257 -36.702 1.00 24.08 O
ATOM 9 C3' U B 53 13.282 11.818 -38.818 1.00 23.21 C
ATOM 10 O3' U B 53 13.317 11.424 -40.170 1.00 22.67 O
ATOM 11 C2' U B 53 12.151 12.773 -38.504 1.00 23.56 C
ATOM 12 O2' U B 53 10.985 12.291 -39.132 1.00 23.66 O
ATOM 13 C1' U B 53 11.941 12.567 -37.002 1.00 24.21 C
ATOM 14 N1 U B 53 12.725 13.630 -36.347 1.00 24.50 N
ATOM 15 C2 U B 53 12.179 14.891 -36.374 1.00 24.80 C
ATOM 16 O2 U B 53 11.093 15.137 -36.907 1.00 24.75 O
ATOM 17 N3 U B 53 12.896 15.876 -35.773 1.00 24.90 N
ATOM 18 C4 U B 53 14.101 15.639 -35.173 1.00 24.98 C
ATOM 19 O4 U B 53 14.693 16.624 -34.640 1.00 25.44 O
ATOM 20 C5 U B 53 14.641 14.329 -35.173 1.00 24.81 C
ATOM 21 C6 U B 53 13.919 13.374 -35.760 1.00 24.71 C
ATOM 22 P C B 54 14.607 11.158 -41.071 1.00 22.35 P
ATOM 23 OP1 C B 54 14.135 9.888 -41.850 1.00 22.97 O
ATOM 24 OP2 C B 54 15.807 10.794 -40.348 1.00 21.99 O
ATOM 25 O5' C B 54 14.693 12.468 -41.986 1.00 20.54 O
TER
ATOM 2 OP1 G A 16 0.807 14.635 -37.330 1.00 29.55 O
ATOM 3 OP2 G A 16 0.540 15.295 -34.872 1.00 29.69 O
ATOM 4 O5' G A 16 0.045 16.959 -36.702 1.00 28.42 O
ATOM 5 C5' G A 16 0.307 16.939 -38.136 1.00 27.02 C
ATOM 6 C4' G A 16 1.677 17.540 -38.299 1.00 25.70 C
ATOM 7 O4' G A 16 2.667 16.969 -37.494 1.00 24.67 O
ATOM 8 C3' G A 16 2.161 17.471 -39.747 1.00 25.40 C
ATOM 9 O3' G A 16 2.650 18.732 -40.225 1.00 25.74 O
ATOM 10 C2' G A 16 3.184 16.388 -39.638 1.00 24.87 C
ATOM 11 O2' G A 16 3.997 16.319 -40.757 1.00 24.93 O
ATOM 12 C1' G A 16 3.827 16.713 -38.286 1.00 23.87 C
ATOM 13 N9 G A 16 4.680 15.570 -37.958 1.00 22.96 N
ATOM 14 C8 G A 16 4.333 14.241 -37.985 1.00 22.59 C
ATOM 15 N7 G A 16 5.299 13.433 -37.671 1.00 22.47 N
ATOM 16 C5 G A 16 6.357 14.280 -37.398 1.00 22.30 C
ATOM 17 C6 G A 16 7.693 13.995 -37.002 1.00 22.28 C
ATOM 18 O6 G A 16 8.188 12.882 -36.798 1.00 22.55 O
ATOM 19 N1 G A 16 8.472 15.088 -36.838 1.00 22.12 N
ATOM 20 C2 G A 16 8.006 16.348 -37.043 1.00 22.35 C
ATOM 21 N2 G A 16 8.921 17.323 -36.838 1.00 22.57 N
ATOM 22 N3 G A 16 6.778 16.664 -37.412 1.00 22.47 N
ATOM 23 C4 G A 16 6.004 15.580 -37.576 1.00 22.43 C
ATOM 24 P G A 17 1.408 19.474 -41.104 1.00 26.00 P
ATOM 25 OP1 G A 17 0.355 19.922 -40.152 1.00 26.10 O
ATOM 26 OP2 G A 17 0.881 18.319 -41.861 1.00 25.92 O
ATOM 27 O5' G A 17 2.320 20.662 -41.658 1.00 26.62 O
TER
ATOM 1 O3' A B 52 15.210 8.598 -35.227 1.00 22.22 O
ATOM 2 P U B 53 16.160 9.474 -36.306 1.00 22.70 P
ATOM 3 OP1 U B 53 16.489 8.351 -37.248 1.00 22.75 O
ATOM 4 OP2 U B 53 17.325 9.878 -35.487 1.00 22.86 O
ATOM 5 O5' U B 53 15.096 10.548 -36.784 1.00 22.48 O
ATOM 6 C5' U B 53 14.107 9.760 -37.521 1.00 23.00 C
ATOM 7 C4' U B 53 12.964 10.656 -37.876 1.00 23.41 C
ATOM 8 O4' U B 53 12.469 11.257 -36.702 1.00 24.08 O
ATOM 9 C3' U B 53 13.282 11.818 -38.818 1.00 23.21 C
ATOM 10 O3' U B 53 13.317 11.424 -40.170 1.00 22.67 O
ATOM 11 C2' U B 53 12.151 12.773 -38.504 1.00 23.56 C
ATOM 12 O2' U B 53 10.985 12.291 -39.132 1.00 23.66 O
ATOM 13 C1' U B 53 11.941 12.567 -37.002 1.00 24.21 C
ATOM 14 N1 U B 53 12.725 13.630 -36.347 1.00 24.50 N
ATOM 15 C2 U B 53 12.179 14.891 -36.374 1.00 24.80 C
ATOM 16 O2 U B 53 11.093 15.137 -36.907 1.00 24.75 O
ATOM 17 N3 U B 53 12.896 15.876 -35.773 1.00 24.90 N
ATOM 18 C4 U B 53 14.101 15.639 -35.173 1.00 24.98 C
ATOM 19 O4 U B 53 14.693 16.624 -34.640 1.00 25.44 O
ATOM 20 C5 U B 53 14.641 14.329 -35.173 1.00 24.81 C
ATOM 21 C6 U B 53 13.919 13.374 -35.760 1.00 24.71 C
ATOM 22 P C B 54 14.607 11.158 -41.071 1.00 22.35 P
ATOM 23 OP1 C B 54 14.135 9.888 -41.850 1.00 22.97 O
ATOM 24 OP2 C B 54 15.807 10.794 -40.348 1.00 21.99 O
ATOM 25 O5' C B 54 14.693 12.468 -41.986 1.00 20.54 O
TER
Atoms:
OP1: (0.807,14.635,-37.330)
OP2: (0.540,15.295,-34.872)
C3': (2.161,17.471,-39.747)
C1': (3.827,16.713,-38.286)
C5': (0.307,16.939,-38.136)
O6: (8.188,12.882,-36.798)
O4': (2.667,16.969,-37.494)
C8: (4.333,14.241,-37.985)
C2: (8.006,16.348,-37.043)
C6: (7.693,13.995,-37.002)
C5: (6.357,14.280,-37.398)
C4: (6.004,15.580,-37.576)
P: (0.097,15.393,-36.306)
C4': (1.677,17.540,-38.299)
C2': (3.184,16.388,-39.638)
O2': (3.997,16.319,-40.757)
N1: (8.472,15.088,-36.838)
N2: (8.921,17.323,-36.838)
N3: (6.778,16.664,-37.412)
N7: (5.299,13.433,-37.671)
N9: (4.680,15.570,-37.958)
O5': (0.045,16.959,-36.702)
O3': (2.650,18.732,-40.225)
OP2: (0.540,15.295,-34.872)
C3': (2.161,17.471,-39.747)
C1': (3.827,16.713,-38.286)
C5': (0.307,16.939,-38.136)
O6: (8.188,12.882,-36.798)
O4': (2.667,16.969,-37.494)
C8: (4.333,14.241,-37.985)
C2: (8.006,16.348,-37.043)
C6: (7.693,13.995,-37.002)
C5: (6.357,14.280,-37.398)
C4: (6.004,15.580,-37.576)
P: (0.097,15.393,-36.306)
C4': (1.677,17.540,-38.299)
C2': (3.184,16.388,-39.638)
O2': (3.997,16.319,-40.757)
N1: (8.472,15.088,-36.838)
N2: (8.921,17.323,-36.838)
N3: (6.778,16.664,-37.412)
N7: (5.299,13.433,-37.671)
N9: (4.680,15.570,-37.958)
O5': (0.045,16.959,-36.702)
O3': (2.650,18.732,-40.225)
C4: (14.101,15.639,-35.173)
N3: (12.896,15.876,-35.773)
OP1: (16.489,8.351,-37.248)
OP2: (17.325,9.878,-35.487)
C2: (12.179,14.891,-36.374)
C1': (11.941,12.567,-37.002)
C3': (13.282,11.818,-38.818)
O5': (15.096,10.548,-36.784)
O4': (12.469,11.257,-36.702)
C5': (14.107,9.760,-37.521)
P: (16.160,9.474,-36.306)
C4': (12.964,10.656,-37.876)
C2': (12.151,12.773,-38.504)
O2': (10.985,12.291,-39.132)
N1: (12.725,13.630,-36.347)
O4: (14.693,16.624,-34.640)
O2: (11.093,15.137,-36.907)
C6: (13.919,13.374,-35.760)
C5: (14.641,14.329,-35.173)
O3': (13.317,11.424,-40.170)
N3: (12.896,15.876,-35.773)
OP1: (16.489,8.351,-37.248)
OP2: (17.325,9.878,-35.487)
C2: (12.179,14.891,-36.374)
C1': (11.941,12.567,-37.002)
C3': (13.282,11.818,-38.818)
O5': (15.096,10.548,-36.784)
O4': (12.469,11.257,-36.702)
C5': (14.107,9.760,-37.521)
P: (16.160,9.474,-36.306)
C4': (12.964,10.656,-37.876)
C2': (12.151,12.773,-38.504)
O2': (10.985,12.291,-39.132)
N1: (12.725,13.630,-36.347)
O4: (14.693,16.624,-34.640)
O2: (11.093,15.137,-36.907)
C6: (13.919,13.374,-35.760)
C5: (14.641,14.329,-35.173)
O3': (13.317,11.424,-40.170)
Image (generated by PyMOL):