Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YLS:B23:B20
Extra
PDB:
ATOM 1 O3' C A 22 51.631 8.848 6.521 1.00 29.15 O
ATOM 2 P G A 23 52.894 8.813 7.493 1.00 30.28 P
ATOM 3 OP1 G A 23 53.708 7.612 7.164 1.00 29.29 O
ATOM 4 OP2 G A 23 52.396 9.027 8.872 1.00 29.89 O
ATOM 5 O5' G A 23 53.697 10.124 7.055 1.00 30.28 O
ATOM 6 C5' G A 23 53.086 11.402 7.153 1.00 30.35 C
ATOM 7 C4' G A 23 54.123 12.449 7.486 1.00 30.86 C
ATOM 8 O4' G A 23 54.748 12.920 6.269 1.00 30.06 O
ATOM 9 C3' G A 23 53.563 13.660 8.220 1.00 31.59 C
ATOM 10 O3' G A 23 53.885 13.503 9.617 1.00 33.50 O
ATOM 11 C2' G A 23 54.210 14.881 7.536 1.00 30.71 C
ATOM 12 O2' G A 23 55.227 15.501 8.323 1.00 30.34 O
ATOM 13 C1' G A 23 54.755 14.329 6.208 1.00 29.59 C
ATOM 14 N9 G A 23 53.994 14.671 5.017 1.00 28.62 N
ATOM 15 C8 G A 23 54.516 15.110 3.830 1.00 28.45 C
ATOM 16 N7 G A 23 53.623 15.300 2.904 1.00 28.33 N
ATOM 17 C5 G A 23 52.426 14.955 3.504 1.00 28.65 C
ATOM 18 C6 G A 23 51.105 14.958 2.976 1.00 28.27 C
ATOM 19 O6 G A 23 50.734 15.290 1.840 1.00 26.71 O
ATOM 20 N1 G A 23 50.164 14.536 3.916 1.00 27.70 N
ATOM 21 C2 G A 23 50.482 14.143 5.195 1.00 27.67 C
ATOM 22 N2 G A 23 49.463 13.750 5.951 1.00 28.57 N
ATOM 23 N3 G A 23 51.709 14.133 5.707 1.00 27.77 N
ATOM 24 C4 G A 23 52.634 14.552 4.809 1.00 28.85 C
ATOM 25 P G A 24 53.470 14.566 10.733 1.00 34.77 P
ATOM 26 OP1 G A 24 54.478 15.651 10.665 1.00 35.01 O
ATOM 27 OP2 G A 24 53.271 13.841 12.007 1.00 35.50 O
ATOM 28 O5' G A 24 52.025 15.093 10.268 1.00 34.77 O
TER
ATOM 1 O3' C B 19 42.577 15.812 -2.007 1.00 15.53 O
ATOM 2 P U B 20 42.565 14.265 -2.344 1.00 16.44 P
ATOM 3 OP1 U B 20 42.684 14.099 -3.811 1.00 15.66 O
ATOM 4 OP2 U B 20 41.432 13.642 -1.634 1.00 16.99 O
ATOM 5 O5' U B 20 43.926 13.806 -1.656 1.00 16.36 O
ATOM 6 C5' U B 20 45.137 14.212 -2.255 1.00 17.46 C
ATOM 7 C4' U B 20 46.166 14.544 -1.212 1.00 17.62 C
ATOM 8 O4' U B 20 45.512 15.019 -0.037 1.00 17.39 O
ATOM 9 C3' U B 20 46.950 13.377 -0.709 1.00 18.66 C
ATOM 10 O3' U B 20 47.959 13.026 -1.614 1.00 21.40 O
ATOM 11 C2' U B 20 47.475 13.889 0.612 1.00 18.10 C
ATOM 12 O2' U B 20 48.633 14.681 0.497 1.00 17.45 O
ATOM 13 C1' U B 20 46.276 14.689 1.100 1.00 17.69 C
ATOM 14 N1 U B 20 45.424 13.939 1.997 1.00 18.59 N
ATOM 15 C2 U B 20 45.956 13.479 3.163 1.00 20.10 C
ATOM 16 O2 U B 20 47.112 13.677 3.480 1.00 20.88 O
ATOM 17 N3 U B 20 45.088 12.770 3.949 1.00 21.33 N
ATOM 18 C4 U B 20 43.759 12.479 3.674 1.00 21.48 C
ATOM 19 O4 U B 20 43.085 11.830 4.481 1.00 22.83 O
ATOM 20 C5 U B 20 43.277 13.004 2.427 1.00 20.31 C
ATOM 21 C6 U B 20 44.111 13.700 1.653 1.00 19.62 C
TER
ATOM 2 P G A 23 52.894 8.813 7.493 1.00 30.28 P
ATOM 3 OP1 G A 23 53.708 7.612 7.164 1.00 29.29 O
ATOM 4 OP2 G A 23 52.396 9.027 8.872 1.00 29.89 O
ATOM 5 O5' G A 23 53.697 10.124 7.055 1.00 30.28 O
ATOM 6 C5' G A 23 53.086 11.402 7.153 1.00 30.35 C
ATOM 7 C4' G A 23 54.123 12.449 7.486 1.00 30.86 C
ATOM 8 O4' G A 23 54.748 12.920 6.269 1.00 30.06 O
ATOM 9 C3' G A 23 53.563 13.660 8.220 1.00 31.59 C
ATOM 10 O3' G A 23 53.885 13.503 9.617 1.00 33.50 O
ATOM 11 C2' G A 23 54.210 14.881 7.536 1.00 30.71 C
ATOM 12 O2' G A 23 55.227 15.501 8.323 1.00 30.34 O
ATOM 13 C1' G A 23 54.755 14.329 6.208 1.00 29.59 C
ATOM 14 N9 G A 23 53.994 14.671 5.017 1.00 28.62 N
ATOM 15 C8 G A 23 54.516 15.110 3.830 1.00 28.45 C
ATOM 16 N7 G A 23 53.623 15.300 2.904 1.00 28.33 N
ATOM 17 C5 G A 23 52.426 14.955 3.504 1.00 28.65 C
ATOM 18 C6 G A 23 51.105 14.958 2.976 1.00 28.27 C
ATOM 19 O6 G A 23 50.734 15.290 1.840 1.00 26.71 O
ATOM 20 N1 G A 23 50.164 14.536 3.916 1.00 27.70 N
ATOM 21 C2 G A 23 50.482 14.143 5.195 1.00 27.67 C
ATOM 22 N2 G A 23 49.463 13.750 5.951 1.00 28.57 N
ATOM 23 N3 G A 23 51.709 14.133 5.707 1.00 27.77 N
ATOM 24 C4 G A 23 52.634 14.552 4.809 1.00 28.85 C
ATOM 25 P G A 24 53.470 14.566 10.733 1.00 34.77 P
ATOM 26 OP1 G A 24 54.478 15.651 10.665 1.00 35.01 O
ATOM 27 OP2 G A 24 53.271 13.841 12.007 1.00 35.50 O
ATOM 28 O5' G A 24 52.025 15.093 10.268 1.00 34.77 O
TER
ATOM 1 O3' C B 19 42.577 15.812 -2.007 1.00 15.53 O
ATOM 2 P U B 20 42.565 14.265 -2.344 1.00 16.44 P
ATOM 3 OP1 U B 20 42.684 14.099 -3.811 1.00 15.66 O
ATOM 4 OP2 U B 20 41.432 13.642 -1.634 1.00 16.99 O
ATOM 5 O5' U B 20 43.926 13.806 -1.656 1.00 16.36 O
ATOM 6 C5' U B 20 45.137 14.212 -2.255 1.00 17.46 C
ATOM 7 C4' U B 20 46.166 14.544 -1.212 1.00 17.62 C
ATOM 8 O4' U B 20 45.512 15.019 -0.037 1.00 17.39 O
ATOM 9 C3' U B 20 46.950 13.377 -0.709 1.00 18.66 C
ATOM 10 O3' U B 20 47.959 13.026 -1.614 1.00 21.40 O
ATOM 11 C2' U B 20 47.475 13.889 0.612 1.00 18.10 C
ATOM 12 O2' U B 20 48.633 14.681 0.497 1.00 17.45 O
ATOM 13 C1' U B 20 46.276 14.689 1.100 1.00 17.69 C
ATOM 14 N1 U B 20 45.424 13.939 1.997 1.00 18.59 N
ATOM 15 C2 U B 20 45.956 13.479 3.163 1.00 20.10 C
ATOM 16 O2 U B 20 47.112 13.677 3.480 1.00 20.88 O
ATOM 17 N3 U B 20 45.088 12.770 3.949 1.00 21.33 N
ATOM 18 C4 U B 20 43.759 12.479 3.674 1.00 21.48 C
ATOM 19 O4 U B 20 43.085 11.830 4.481 1.00 22.83 O
ATOM 20 C5 U B 20 43.277 13.004 2.427 1.00 20.31 C
ATOM 21 C6 U B 20 44.111 13.700 1.653 1.00 19.62 C
TER
Atoms:
OP1: (53.708,7.612,7.164)
OP2: (52.396,9.027,8.872)
C3': (53.563,13.660,8.220)
C1': (54.755,14.329,6.208)
C5': (53.086,11.402,7.153)
O6: (50.734,15.290,1.840)
O4': (54.748,12.920,6.269)
C8: (54.516,15.110,3.830)
C2: (50.482,14.143,5.195)
C6: (51.105,14.958,2.976)
C5: (52.426,14.955,3.504)
C4: (52.634,14.552,4.809)
P: (52.894,8.813,7.493)
C4': (54.123,12.449,7.486)
C2': (54.210,14.881,7.536)
O2': (55.227,15.501,8.323)
N1: (50.164,14.536,3.916)
N2: (49.463,13.750,5.951)
N3: (51.709,14.133,5.707)
N7: (53.623,15.300,2.904)
N9: (53.994,14.671,5.017)
O5': (53.697,10.124,7.055)
O3': (53.885,13.503,9.617)
OP2: (52.396,9.027,8.872)
C3': (53.563,13.660,8.220)
C1': (54.755,14.329,6.208)
C5': (53.086,11.402,7.153)
O6: (50.734,15.290,1.840)
O4': (54.748,12.920,6.269)
C8: (54.516,15.110,3.830)
C2: (50.482,14.143,5.195)
C6: (51.105,14.958,2.976)
C5: (52.426,14.955,3.504)
C4: (52.634,14.552,4.809)
P: (52.894,8.813,7.493)
C4': (54.123,12.449,7.486)
C2': (54.210,14.881,7.536)
O2': (55.227,15.501,8.323)
N1: (50.164,14.536,3.916)
N2: (49.463,13.750,5.951)
N3: (51.709,14.133,5.707)
N7: (53.623,15.300,2.904)
N9: (53.994,14.671,5.017)
O5': (53.697,10.124,7.055)
O3': (53.885,13.503,9.617)
C4: (43.759,12.479,3.674)
N3: (45.088,12.770,3.949)
OP1: (42.684,14.099,-3.811)
OP2: (41.432,13.642,-1.634)
C2: (45.956,13.479,3.163)
C1': (46.276,14.689,1.100)
C3': (46.950,13.377,-0.709)
O5': (43.926,13.806,-1.656)
O4': (45.512,15.019,-0.037)
C5': (45.137,14.212,-2.255)
P: (42.565,14.265,-2.344)
C4': (46.166,14.544,-1.212)
C2': (47.475,13.889,0.612)
O2': (48.633,14.681,0.497)
N1: (45.424,13.939,1.997)
O4: (43.085,11.830,4.481)
O2: (47.112,13.677,3.480)
C6: (44.111,13.700,1.653)
C5: (43.277,13.004,2.427)
O3': (47.959,13.026,-1.614)
N3: (45.088,12.770,3.949)
OP1: (42.684,14.099,-3.811)
OP2: (41.432,13.642,-1.634)
C2: (45.956,13.479,3.163)
C1': (46.276,14.689,1.100)
C3': (46.950,13.377,-0.709)
O5': (43.926,13.806,-1.656)
O4': (45.512,15.019,-0.037)
C5': (45.137,14.212,-2.255)
P: (42.565,14.265,-2.344)
C4': (46.166,14.544,-1.212)
C2': (47.475,13.889,0.612)
O2': (48.633,14.681,0.497)
N1: (45.424,13.939,1.997)
O4: (43.085,11.830,4.481)
O2: (47.112,13.677,3.480)
C6: (44.111,13.700,1.653)
C5: (43.277,13.004,2.427)
O3': (47.959,13.026,-1.614)
Image (generated by PyMOL):