Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:045:046
Extra
PDB:
ATOM 1 O3' G A 44 60.395 164.662 39.217 1.00 43.35 O
ATOM 2 P U A 45 59.050 165.417 39.634 1.00 45.54 P
ATOM 3 OP1 U A 45 59.305 166.872 39.503 1.00 44.85 O
ATOM 4 OP2 U A 45 58.585 164.867 40.934 1.00 46.05 O
ATOM 5 O5' U A 45 58.016 164.979 38.510 1.00 45.03 O
ATOM 6 C5' U A 45 58.319 165.165 37.123 1.00 45.97 C
ATOM 7 C4' U A 45 57.360 164.367 36.283 1.00 48.13 C
ATOM 8 O4' U A 45 57.642 162.952 36.426 1.00 49.77 O
ATOM 9 C3' U A 45 55.900 164.519 36.675 1.00 47.31 C
ATOM 10 O3' U A 45 55.350 165.681 36.059 1.00 46.86 O
ATOM 11 C2' U A 45 55.285 163.228 36.148 1.00 48.38 C
ATOM 12 O2' U A 45 55.025 163.287 34.764 1.00 51.72 O
ATOM 13 C1' U A 45 56.423 162.223 36.376 1.00 49.90 C
ATOM 14 N1 U A 45 56.300 161.404 37.596 1.00 49.55 N
ATOM 15 C2 U A 45 55.586 160.220 37.508 1.00 48.50 C
ATOM 16 O2 U A 45 55.078 159.824 36.479 1.00 49.12 O
ATOM 17 N3 U A 45 55.495 159.511 38.675 1.00 49.55 N
ATOM 18 C4 U A 45 56.036 159.845 39.894 1.00 48.88 C
ATOM 19 O4 U A 45 55.891 159.080 40.845 1.00 49.19 O
ATOM 20 C5 U A 45 56.763 161.072 39.907 1.00 49.75 C
ATOM 21 C6 U A 45 56.869 161.793 38.788 1.00 49.23 C
ATOM 22 P G A 46 54.339 166.629 36.878 1.00 48.10 P
ATOM 23 OP1 G A 46 54.048 167.797 36.015 1.00 49.23 O
ATOM 24 OP2 G A 46 54.848 166.849 38.250 1.00 49.23 O
ATOM 25 O5' G A 46 53.011 165.762 36.974 1.00 47.90 O
TER
ATOM 1 O3' U B 45 55.350 165.681 36.059 1.00 46.86 O
ATOM 2 P G B 46 54.339 166.629 36.878 1.00 48.10 P
ATOM 3 OP1 G B 46 54.048 167.797 36.015 1.00 49.23 O
ATOM 4 OP2 G B 46 54.848 166.849 38.250 1.00 49.23 O
ATOM 5 O5' G B 46 53.011 165.762 36.974 1.00 47.90 O
ATOM 6 C5' G B 46 52.317 165.379 35.787 1.00 45.83 C
ATOM 7 C4' G B 46 50.836 165.419 36.019 1.00 46.23 C
ATOM 8 O4' G B 46 50.463 164.302 36.864 1.00 48.31 O
ATOM 9 C3' G B 46 50.291 166.670 36.702 1.00 47.09 C
ATOM 10 O3' G B 46 49.014 166.964 36.144 1.00 48.90 O
ATOM 11 C2' G B 46 50.129 166.216 38.150 1.00 45.79 C
ATOM 12 O2' G B 46 49.117 166.919 38.837 1.00 45.07 O
ATOM 13 C1' G B 46 49.689 164.773 37.944 1.00 48.94 C
ATOM 14 N9 G B 46 49.837 163.846 39.065 1.00 51.85 N
ATOM 15 C8 G B 46 50.547 164.022 40.233 1.00 52.41 C
ATOM 16 N7 G B 46 50.472 162.994 41.037 1.00 51.87 N
ATOM 17 C5 G B 46 49.670 162.086 40.359 1.00 52.83 C
ATOM 18 C6 G B 46 49.239 160.787 40.725 1.00 52.41 C
ATOM 19 O6 G B 46 49.494 160.154 41.754 1.00 52.87 O
ATOM 20 N1 G B 46 48.433 160.219 39.741 1.00 52.69 N
ATOM 21 C2 G B 46 48.089 160.820 38.557 1.00 51.72 C
ATOM 22 N2 G B 46 47.303 160.113 37.739 1.00 51.60 N
ATOM 23 N3 G B 46 48.487 162.024 38.202 1.00 51.72 N
ATOM 24 C4 G B 46 49.268 162.597 39.143 1.00 52.34 C
ATOM 25 P C B 47 48.772 168.370 35.407 1.00 48.14 P
ATOM 26 OP1 C B 47 47.411 168.365 34.808 1.00 50.00 O
ATOM 27 OP2 C B 47 49.957 168.619 34.542 1.00 46.67 O
ATOM 28 O5' C B 47 48.756 169.414 36.606 1.00 48.17 O
TER
ATOM 2 P U A 45 59.050 165.417 39.634 1.00 45.54 P
ATOM 3 OP1 U A 45 59.305 166.872 39.503 1.00 44.85 O
ATOM 4 OP2 U A 45 58.585 164.867 40.934 1.00 46.05 O
ATOM 5 O5' U A 45 58.016 164.979 38.510 1.00 45.03 O
ATOM 6 C5' U A 45 58.319 165.165 37.123 1.00 45.97 C
ATOM 7 C4' U A 45 57.360 164.367 36.283 1.00 48.13 C
ATOM 8 O4' U A 45 57.642 162.952 36.426 1.00 49.77 O
ATOM 9 C3' U A 45 55.900 164.519 36.675 1.00 47.31 C
ATOM 10 O3' U A 45 55.350 165.681 36.059 1.00 46.86 O
ATOM 11 C2' U A 45 55.285 163.228 36.148 1.00 48.38 C
ATOM 12 O2' U A 45 55.025 163.287 34.764 1.00 51.72 O
ATOM 13 C1' U A 45 56.423 162.223 36.376 1.00 49.90 C
ATOM 14 N1 U A 45 56.300 161.404 37.596 1.00 49.55 N
ATOM 15 C2 U A 45 55.586 160.220 37.508 1.00 48.50 C
ATOM 16 O2 U A 45 55.078 159.824 36.479 1.00 49.12 O
ATOM 17 N3 U A 45 55.495 159.511 38.675 1.00 49.55 N
ATOM 18 C4 U A 45 56.036 159.845 39.894 1.00 48.88 C
ATOM 19 O4 U A 45 55.891 159.080 40.845 1.00 49.19 O
ATOM 20 C5 U A 45 56.763 161.072 39.907 1.00 49.75 C
ATOM 21 C6 U A 45 56.869 161.793 38.788 1.00 49.23 C
ATOM 22 P G A 46 54.339 166.629 36.878 1.00 48.10 P
ATOM 23 OP1 G A 46 54.048 167.797 36.015 1.00 49.23 O
ATOM 24 OP2 G A 46 54.848 166.849 38.250 1.00 49.23 O
ATOM 25 O5' G A 46 53.011 165.762 36.974 1.00 47.90 O
TER
ATOM 1 O3' U B 45 55.350 165.681 36.059 1.00 46.86 O
ATOM 2 P G B 46 54.339 166.629 36.878 1.00 48.10 P
ATOM 3 OP1 G B 46 54.048 167.797 36.015 1.00 49.23 O
ATOM 4 OP2 G B 46 54.848 166.849 38.250 1.00 49.23 O
ATOM 5 O5' G B 46 53.011 165.762 36.974 1.00 47.90 O
ATOM 6 C5' G B 46 52.317 165.379 35.787 1.00 45.83 C
ATOM 7 C4' G B 46 50.836 165.419 36.019 1.00 46.23 C
ATOM 8 O4' G B 46 50.463 164.302 36.864 1.00 48.31 O
ATOM 9 C3' G B 46 50.291 166.670 36.702 1.00 47.09 C
ATOM 10 O3' G B 46 49.014 166.964 36.144 1.00 48.90 O
ATOM 11 C2' G B 46 50.129 166.216 38.150 1.00 45.79 C
ATOM 12 O2' G B 46 49.117 166.919 38.837 1.00 45.07 O
ATOM 13 C1' G B 46 49.689 164.773 37.944 1.00 48.94 C
ATOM 14 N9 G B 46 49.837 163.846 39.065 1.00 51.85 N
ATOM 15 C8 G B 46 50.547 164.022 40.233 1.00 52.41 C
ATOM 16 N7 G B 46 50.472 162.994 41.037 1.00 51.87 N
ATOM 17 C5 G B 46 49.670 162.086 40.359 1.00 52.83 C
ATOM 18 C6 G B 46 49.239 160.787 40.725 1.00 52.41 C
ATOM 19 O6 G B 46 49.494 160.154 41.754 1.00 52.87 O
ATOM 20 N1 G B 46 48.433 160.219 39.741 1.00 52.69 N
ATOM 21 C2 G B 46 48.089 160.820 38.557 1.00 51.72 C
ATOM 22 N2 G B 46 47.303 160.113 37.739 1.00 51.60 N
ATOM 23 N3 G B 46 48.487 162.024 38.202 1.00 51.72 N
ATOM 24 C4 G B 46 49.268 162.597 39.143 1.00 52.34 C
ATOM 25 P C B 47 48.772 168.370 35.407 1.00 48.14 P
ATOM 26 OP1 C B 47 47.411 168.365 34.808 1.00 50.00 O
ATOM 27 OP2 C B 47 49.957 168.619 34.542 1.00 46.67 O
ATOM 28 O5' C B 47 48.756 169.414 36.606 1.00 48.17 O
TER
Atoms:
C4: (56.036,159.845,39.894)
N3: (55.495,159.511,38.675)
OP1: (59.305,166.872,39.503)
OP2: (58.585,164.867,40.934)
C2: (55.586,160.220,37.508)
C1': (56.423,162.223,36.376)
C3': (55.900,164.519,36.675)
O5': (58.016,164.979,38.510)
O4': (57.642,162.952,36.426)
C5': (58.319,165.165,37.123)
P: (59.050,165.417,39.634)
C4': (57.360,164.367,36.283)
C2': (55.285,163.228,36.148)
O2': (55.025,163.287,34.764)
N1: (56.300,161.404,37.596)
O4: (55.891,159.080,40.845)
O2: (55.078,159.824,36.479)
C6: (56.869,161.793,38.788)
C5: (56.763,161.072,39.907)
O3': (55.350,165.681,36.059)
N3: (55.495,159.511,38.675)
OP1: (59.305,166.872,39.503)
OP2: (58.585,164.867,40.934)
C2: (55.586,160.220,37.508)
C1': (56.423,162.223,36.376)
C3': (55.900,164.519,36.675)
O5': (58.016,164.979,38.510)
O4': (57.642,162.952,36.426)
C5': (58.319,165.165,37.123)
P: (59.050,165.417,39.634)
C4': (57.360,164.367,36.283)
C2': (55.285,163.228,36.148)
O2': (55.025,163.287,34.764)
N1: (56.300,161.404,37.596)
O4: (55.891,159.080,40.845)
O2: (55.078,159.824,36.479)
C6: (56.869,161.793,38.788)
C5: (56.763,161.072,39.907)
O3': (55.350,165.681,36.059)
OP1: (54.048,167.797,36.015)
OP2: (54.848,166.849,38.250)
C3': (50.291,166.670,36.702)
C1': (49.689,164.773,37.944)
C5': (52.317,165.379,35.787)
O6: (49.494,160.154,41.754)
O4': (50.463,164.302,36.864)
C8: (50.547,164.022,40.233)
C2: (48.089,160.820,38.557)
C6: (49.239,160.787,40.725)
C5: (49.670,162.086,40.359)
C4: (49.268,162.597,39.143)
P: (54.339,166.629,36.878)
C4': (50.836,165.419,36.019)
C2': (50.129,166.216,38.150)
O2': (49.117,166.919,38.837)
N1: (48.433,160.219,39.741)
N2: (47.303,160.113,37.739)
N3: (48.487,162.024,38.202)
N7: (50.472,162.994,41.037)
N9: (49.837,163.846,39.065)
O5': (53.011,165.762,36.974)
O3': (49.014,166.964,36.144)
OP2: (54.848,166.849,38.250)
C3': (50.291,166.670,36.702)
C1': (49.689,164.773,37.944)
C5': (52.317,165.379,35.787)
O6: (49.494,160.154,41.754)
O4': (50.463,164.302,36.864)
C8: (50.547,164.022,40.233)
C2: (48.089,160.820,38.557)
C6: (49.239,160.787,40.725)
C5: (49.670,162.086,40.359)
C4: (49.268,162.597,39.143)
P: (54.339,166.629,36.878)
C4': (50.836,165.419,36.019)
C2': (50.129,166.216,38.150)
O2': (49.117,166.919,38.837)
N1: (48.433,160.219,39.741)
N2: (47.303,160.113,37.739)
N3: (48.487,162.024,38.202)
N7: (50.472,162.994,41.037)
N9: (49.837,163.846,39.065)
O5': (53.011,165.762,36.974)
O3': (49.014,166.964,36.144)
Image (generated by PyMOL):