Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12509:12510
Extra
PDB:
ATOM 1 O3' C A2508 27.801 -56.854 49.273 1.00 43.19 O
ATOM 2 P U A2509 27.807 -55.943 50.622 1.00 38.57 P
ATOM 3 OP1 U A2509 29.144 -56.042 51.159 1.00 38.45 O
ATOM 4 OP2 U A2509 26.700 -56.373 51.477 1.00 38.66 O
ATOM 5 O5' U A2509 27.561 -54.455 50.089 1.00 38.21 O
ATOM 6 C5' U A2509 28.661 -53.670 49.623 1.00 37.98 C
ATOM 7 C4' U A2509 28.223 -52.404 48.916 1.00 37.74 C
ATOM 8 O4' U A2509 27.308 -52.723 47.845 1.00 38.04 O
ATOM 9 C3' U A2509 27.463 -51.377 49.728 1.00 37.41 C
ATOM 10 O3' U A2509 28.302 -50.569 50.521 1.00 37.05 O
ATOM 11 C2' U A2509 26.788 -50.582 48.630 1.00 37.39 C
ATOM 12 O2' U A2509 27.726 -49.766 47.962 1.00 37.20 O
ATOM 13 C1' U A2509 26.370 -51.685 47.683 1.00 37.84 C
ATOM 14 N1 U A2509 24.996 -52.212 48.007 1.00 38.04 N
ATOM 15 C2 U A2509 23.925 -51.415 47.659 1.00 37.96 C
ATOM 16 O2 U A2509 24.128 -50.376 47.106 1.00 37.75 O
ATOM 17 N3 U A2509 22.645 -51.854 47.933 1.00 38.15 N
ATOM 18 C4 U A2509 22.296 -53.055 48.552 1.00 38.42 C
ATOM 19 O4 U A2509 21.092 -53.344 48.773 1.00 38.58 O
ATOM 20 C5 U A2509 23.475 -53.840 48.924 1.00 38.49 C
ATOM 21 C6 U A2509 24.733 -53.413 48.650 1.00 38.31 C
ATOM 22 P A A2510 28.437 -50.783 52.095 1.00 41.55 P
ATOM 23 OP1 A A2510 29.516 -49.875 52.522 1.00 41.21 O
ATOM 24 OP2 A A2510 28.583 -52.222 52.352 1.00 41.90 O
ATOM 25 O5' A A2510 27.022 -50.284 52.654 1.00 41.45 O
TER
ATOM 1 O3' U B2509 28.302 -50.569 50.521 1.00 37.05 O
ATOM 2 P A B2510 28.437 -50.783 52.095 1.00 41.55 P
ATOM 3 OP1 A B2510 29.516 -49.875 52.522 1.00 41.21 O
ATOM 4 OP2 A B2510 28.583 -52.222 52.352 1.00 41.90 O
ATOM 5 O5' A B2510 27.022 -50.284 52.654 1.00 41.45 O
ATOM 6 C5' A B2510 26.507 -50.714 53.908 1.00 41.47 C
ATOM 7 C4' A B2510 25.705 -49.613 54.550 1.00 41.18 C
ATOM 8 O4' A B2510 24.644 -49.160 53.668 1.00 41.23 O
ATOM 9 C3' A B2510 24.992 -49.935 55.847 1.00 41.19 C
ATOM 10 O3' A B2510 25.843 -49.839 56.949 1.00 41.02 O
ATOM 11 C2' A B2510 23.890 -48.883 55.907 1.00 41.01 C
ATOM 12 O2' A B2510 24.355 -47.737 56.567 1.00 40.63 O
ATOM 13 C1' A B2510 23.645 -48.526 54.439 1.00 41.07 C
ATOM 14 N9 A B2510 22.309 -48.971 54.014 1.00 41.34 N
ATOM 15 C8 A B2510 21.859 -50.265 53.990 1.00 41.71 C
ATOM 16 N7 A B2510 20.575 -50.358 53.674 1.00 41.88 N
ATOM 17 C5 A B2510 20.157 -49.031 53.517 1.00 41.60 C
ATOM 18 C6 A B2510 18.911 -48.446 53.173 1.00 41.62 C
ATOM 19 N6 A B2510 17.839 -49.163 52.914 1.00 41.94 N
ATOM 20 N1 A B2510 18.807 -47.098 53.104 1.00 41.31 N
ATOM 21 C2 A B2510 19.908 -46.375 53.388 1.00 41.00 C
ATOM 22 N3 A B2510 21.124 -46.818 53.694 1.00 40.95 N
ATOM 23 C4 A B2510 21.211 -48.165 53.753 1.00 41.26 C
ATOM 24 P U B2511 26.065 -51.077 57.909 1.00 46.62 P
ATOM 25 OP1 U B2511 27.291 -50.799 58.657 1.00 46.42 O
ATOM 26 OP2 U B2511 25.993 -52.307 57.078 1.00 47.02 O
ATOM 27 O5' U B2511 24.799 -51.007 58.875 1.00 46.62 O
TER
ATOM 2 P U A2509 27.807 -55.943 50.622 1.00 38.57 P
ATOM 3 OP1 U A2509 29.144 -56.042 51.159 1.00 38.45 O
ATOM 4 OP2 U A2509 26.700 -56.373 51.477 1.00 38.66 O
ATOM 5 O5' U A2509 27.561 -54.455 50.089 1.00 38.21 O
ATOM 6 C5' U A2509 28.661 -53.670 49.623 1.00 37.98 C
ATOM 7 C4' U A2509 28.223 -52.404 48.916 1.00 37.74 C
ATOM 8 O4' U A2509 27.308 -52.723 47.845 1.00 38.04 O
ATOM 9 C3' U A2509 27.463 -51.377 49.728 1.00 37.41 C
ATOM 10 O3' U A2509 28.302 -50.569 50.521 1.00 37.05 O
ATOM 11 C2' U A2509 26.788 -50.582 48.630 1.00 37.39 C
ATOM 12 O2' U A2509 27.726 -49.766 47.962 1.00 37.20 O
ATOM 13 C1' U A2509 26.370 -51.685 47.683 1.00 37.84 C
ATOM 14 N1 U A2509 24.996 -52.212 48.007 1.00 38.04 N
ATOM 15 C2 U A2509 23.925 -51.415 47.659 1.00 37.96 C
ATOM 16 O2 U A2509 24.128 -50.376 47.106 1.00 37.75 O
ATOM 17 N3 U A2509 22.645 -51.854 47.933 1.00 38.15 N
ATOM 18 C4 U A2509 22.296 -53.055 48.552 1.00 38.42 C
ATOM 19 O4 U A2509 21.092 -53.344 48.773 1.00 38.58 O
ATOM 20 C5 U A2509 23.475 -53.840 48.924 1.00 38.49 C
ATOM 21 C6 U A2509 24.733 -53.413 48.650 1.00 38.31 C
ATOM 22 P A A2510 28.437 -50.783 52.095 1.00 41.55 P
ATOM 23 OP1 A A2510 29.516 -49.875 52.522 1.00 41.21 O
ATOM 24 OP2 A A2510 28.583 -52.222 52.352 1.00 41.90 O
ATOM 25 O5' A A2510 27.022 -50.284 52.654 1.00 41.45 O
TER
ATOM 1 O3' U B2509 28.302 -50.569 50.521 1.00 37.05 O
ATOM 2 P A B2510 28.437 -50.783 52.095 1.00 41.55 P
ATOM 3 OP1 A B2510 29.516 -49.875 52.522 1.00 41.21 O
ATOM 4 OP2 A B2510 28.583 -52.222 52.352 1.00 41.90 O
ATOM 5 O5' A B2510 27.022 -50.284 52.654 1.00 41.45 O
ATOM 6 C5' A B2510 26.507 -50.714 53.908 1.00 41.47 C
ATOM 7 C4' A B2510 25.705 -49.613 54.550 1.00 41.18 C
ATOM 8 O4' A B2510 24.644 -49.160 53.668 1.00 41.23 O
ATOM 9 C3' A B2510 24.992 -49.935 55.847 1.00 41.19 C
ATOM 10 O3' A B2510 25.843 -49.839 56.949 1.00 41.02 O
ATOM 11 C2' A B2510 23.890 -48.883 55.907 1.00 41.01 C
ATOM 12 O2' A B2510 24.355 -47.737 56.567 1.00 40.63 O
ATOM 13 C1' A B2510 23.645 -48.526 54.439 1.00 41.07 C
ATOM 14 N9 A B2510 22.309 -48.971 54.014 1.00 41.34 N
ATOM 15 C8 A B2510 21.859 -50.265 53.990 1.00 41.71 C
ATOM 16 N7 A B2510 20.575 -50.358 53.674 1.00 41.88 N
ATOM 17 C5 A B2510 20.157 -49.031 53.517 1.00 41.60 C
ATOM 18 C6 A B2510 18.911 -48.446 53.173 1.00 41.62 C
ATOM 19 N6 A B2510 17.839 -49.163 52.914 1.00 41.94 N
ATOM 20 N1 A B2510 18.807 -47.098 53.104 1.00 41.31 N
ATOM 21 C2 A B2510 19.908 -46.375 53.388 1.00 41.00 C
ATOM 22 N3 A B2510 21.124 -46.818 53.694 1.00 40.95 N
ATOM 23 C4 A B2510 21.211 -48.165 53.753 1.00 41.26 C
ATOM 24 P U B2511 26.065 -51.077 57.909 1.00 46.62 P
ATOM 25 OP1 U B2511 27.291 -50.799 58.657 1.00 46.42 O
ATOM 26 OP2 U B2511 25.993 -52.307 57.078 1.00 47.02 O
ATOM 27 O5' U B2511 24.799 -51.007 58.875 1.00 46.62 O
TER
Atoms:
C4: (22.296,-53.055,48.552)
N3: (22.645,-51.854,47.933)
OP1: (29.144,-56.042,51.159)
OP2: (26.700,-56.373,51.477)
C2: (23.925,-51.415,47.659)
C1': (26.370,-51.685,47.683)
C3': (27.463,-51.377,49.728)
O5': (27.561,-54.455,50.089)
O4': (27.308,-52.723,47.845)
C5': (28.661,-53.670,49.623)
P: (27.807,-55.943,50.622)
C4': (28.223,-52.404,48.916)
C2': (26.788,-50.582,48.630)
O2': (27.726,-49.766,47.962)
N1: (24.996,-52.212,48.007)
O4: (21.092,-53.344,48.773)
O2: (24.128,-50.376,47.106)
C6: (24.733,-53.413,48.650)
C5: (23.475,-53.840,48.924)
O3': (28.302,-50.569,50.521)
N3: (22.645,-51.854,47.933)
OP1: (29.144,-56.042,51.159)
OP2: (26.700,-56.373,51.477)
C2: (23.925,-51.415,47.659)
C1': (26.370,-51.685,47.683)
C3': (27.463,-51.377,49.728)
O5': (27.561,-54.455,50.089)
O4': (27.308,-52.723,47.845)
C5': (28.661,-53.670,49.623)
P: (27.807,-55.943,50.622)
C4': (28.223,-52.404,48.916)
C2': (26.788,-50.582,48.630)
O2': (27.726,-49.766,47.962)
N1: (24.996,-52.212,48.007)
O4: (21.092,-53.344,48.773)
O2: (24.128,-50.376,47.106)
C6: (24.733,-53.413,48.650)
C5: (23.475,-53.840,48.924)
O3': (28.302,-50.569,50.521)
OP1: (29.516,-49.875,52.522)
OP2: (28.583,-52.222,52.352)
C3': (24.992,-49.935,55.847)
C1': (23.645,-48.526,54.439)
C5': (26.507,-50.714,53.908)
O4': (24.644,-49.160,53.668)
C8: (21.859,-50.265,53.990)
O2': (24.355,-47.737,56.567)
C6: (18.911,-48.446,53.173)
C5: (20.157,-49.031,53.517)
C4: (21.211,-48.165,53.753)
P: (28.437,-50.783,52.095)
C4': (25.705,-49.613,54.550)
C2': (23.890,-48.883,55.907)
C2: (19.908,-46.375,53.388)
N1: (18.807,-47.098,53.104)
N3: (21.124,-46.818,53.694)
N6: (17.839,-49.163,52.914)
N7: (20.575,-50.358,53.674)
N9: (22.309,-48.971,54.014)
O5': (27.022,-50.284,52.654)
O3': (25.843,-49.839,56.949)
OP2: (28.583,-52.222,52.352)
C3': (24.992,-49.935,55.847)
C1': (23.645,-48.526,54.439)
C5': (26.507,-50.714,53.908)
O4': (24.644,-49.160,53.668)
C8: (21.859,-50.265,53.990)
O2': (24.355,-47.737,56.567)
C6: (18.911,-48.446,53.173)
C5: (20.157,-49.031,53.517)
C4: (21.211,-48.165,53.753)
P: (28.437,-50.783,52.095)
C4': (25.705,-49.613,54.550)
C2': (23.890,-48.883,55.907)
C2: (19.908,-46.375,53.388)
N1: (18.807,-47.098,53.104)
N3: (21.124,-46.818,53.694)
N6: (17.839,-49.163,52.914)
N7: (20.575,-50.358,53.674)
N9: (22.309,-48.971,54.014)
O5': (27.022,-50.284,52.654)
O3': (25.843,-49.839,56.949)
Image (generated by PyMOL):