Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:B20:B49
Extra
PDB:
ATOM 1 O3' U A 19 25.573 12.421 -11.697 1.00 69.88 O
ATOM 2 P A A 20 25.415 14.020 -11.782 1.00 70.76 P
ATOM 3 OP1 A A 20 26.783 14.594 -11.813 1.00 66.00 O
ATOM 4 OP2 A A 20 24.499 14.426 -10.690 1.00 72.97 O
ATOM 5 O5' A A 20 24.707 14.234 -13.192 1.00 63.82 O
ATOM 6 C5' A A 20 25.472 14.472 -14.369 1.00 65.07 C
ATOM 7 C4' A A 20 24.606 14.954 -15.508 1.00 68.29 C
ATOM 8 O4' A A 20 23.673 13.901 -15.874 1.00 66.85 O
ATOM 9 C3' A A 20 23.758 16.186 -15.201 1.00 68.36 C
ATOM 10 O3' A A 20 23.612 16.971 -16.384 1.00 76.65 O
ATOM 11 C2' A A 20 22.413 15.580 -14.818 1.00 66.05 C
ATOM 12 O2' A A 20 21.307 16.440 -14.996 1.00 63.94 O
ATOM 13 C1' A A 20 22.343 14.368 -15.743 1.00 65.52 C
ATOM 14 N9 A A 20 21.526 13.271 -15.219 1.00 62.80 N
ATOM 15 C8 A A 20 21.896 12.316 -14.304 1.00 62.86 C
ATOM 16 N7 A A 20 20.948 11.457 -14.020 1.00 58.68 N
ATOM 17 C5 A A 20 19.880 11.875 -14.802 1.00 56.21 C
ATOM 18 C6 A A 20 18.574 11.379 -14.957 1.00 57.73 C
ATOM 19 N6 A A 20 18.107 10.311 -14.305 1.00 57.65 N
ATOM 20 N1 A A 20 17.756 12.025 -15.816 1.00 59.40 N
ATOM 21 C2 A A 20 18.227 13.096 -16.468 1.00 59.64 C
ATOM 22 N3 A A 20 19.432 13.657 -16.406 1.00 61.11 N
ATOM 23 C4 A A 20 20.221 12.990 -15.546 1.00 57.35 C
ATOM 24 P U A 21 24.415 18.356 -16.536 1.00 90.03 P
ATOM 25 OP1 U A 21 24.373 19.033 -15.217 1.00 80.86 O
ATOM 26 OP2 U A 21 23.854 19.059 -17.715 1.00 94.33 O
ATOM 27 O5' U A 21 25.899 17.871 -16.849 1.00 82.06 O
TER
ATOM 1 O3' U B 48 21.220 10.012 -4.698 1.00 80.61 O
ATOM 2 P A B 49 21.962 8.584 -4.777 1.00 89.86 P
ATOM 3 OP1 A B 49 22.946 8.544 -3.669 1.00 92.53 O
ATOM 4 OP2 A B 49 22.453 8.420 -6.168 1.00 83.99 O
ATOM 5 O5' A B 49 20.784 7.552 -4.488 1.00 78.24 O
ATOM 6 C5' A B 49 21.066 6.202 -4.152 1.00 74.03 C
ATOM 7 C4' A B 49 20.497 5.248 -5.172 1.00 74.53 C
ATOM 8 O4' A B 49 19.833 5.994 -6.225 1.00 78.52 O
ATOM 9 C3' A B 49 21.508 4.385 -5.910 1.00 72.41 C
ATOM 10 O3' A B 49 21.902 3.244 -5.169 1.00 78.76 O
ATOM 11 C2' A B 49 20.782 4.052 -7.206 1.00 66.34 C
ATOM 12 O2' A B 49 19.831 3.017 -6.998 1.00 65.35 O
ATOM 13 C1' A B 49 20.027 5.354 -7.469 1.00 70.81 C
ATOM 14 N9 A B 49 20.782 6.266 -8.348 1.00 73.97 N
ATOM 15 C8 A B 49 22.091 6.665 -8.238 1.00 71.33 C
ATOM 16 N7 A B 49 22.472 7.497 -9.177 1.00 68.46 N
ATOM 17 C5 A B 49 21.336 7.659 -9.959 1.00 67.02 C
ATOM 18 C6 A B 49 21.079 8.419 -11.114 1.00 65.83 C
ATOM 19 N6 A B 49 21.986 9.190 -11.718 1.00 67.70 N
ATOM 20 N1 A B 49 19.838 8.354 -11.643 1.00 61.53 N
ATOM 21 C2 A B 49 18.928 7.579 -11.042 1.00 67.68 C
ATOM 22 N3 A B 49 19.045 6.822 -9.955 1.00 66.96 N
ATOM 23 C4 A B 49 20.289 6.908 -9.457 1.00 69.29 C
ATOM 24 P A B 50 23.073 2.290 -5.714 1.00 76.21 P
ATOM 25 OP1 A B 50 23.459 1.391 -4.599 1.00 55.62 O
ATOM 26 OP2 A B 50 24.108 3.167 -6.312 1.00 73.05 O
ATOM 27 O5' A B 50 22.345 1.455 -6.856 1.00 72.44 O
TER
ATOM 2 P A A 20 25.415 14.020 -11.782 1.00 70.76 P
ATOM 3 OP1 A A 20 26.783 14.594 -11.813 1.00 66.00 O
ATOM 4 OP2 A A 20 24.499 14.426 -10.690 1.00 72.97 O
ATOM 5 O5' A A 20 24.707 14.234 -13.192 1.00 63.82 O
ATOM 6 C5' A A 20 25.472 14.472 -14.369 1.00 65.07 C
ATOM 7 C4' A A 20 24.606 14.954 -15.508 1.00 68.29 C
ATOM 8 O4' A A 20 23.673 13.901 -15.874 1.00 66.85 O
ATOM 9 C3' A A 20 23.758 16.186 -15.201 1.00 68.36 C
ATOM 10 O3' A A 20 23.612 16.971 -16.384 1.00 76.65 O
ATOM 11 C2' A A 20 22.413 15.580 -14.818 1.00 66.05 C
ATOM 12 O2' A A 20 21.307 16.440 -14.996 1.00 63.94 O
ATOM 13 C1' A A 20 22.343 14.368 -15.743 1.00 65.52 C
ATOM 14 N9 A A 20 21.526 13.271 -15.219 1.00 62.80 N
ATOM 15 C8 A A 20 21.896 12.316 -14.304 1.00 62.86 C
ATOM 16 N7 A A 20 20.948 11.457 -14.020 1.00 58.68 N
ATOM 17 C5 A A 20 19.880 11.875 -14.802 1.00 56.21 C
ATOM 18 C6 A A 20 18.574 11.379 -14.957 1.00 57.73 C
ATOM 19 N6 A A 20 18.107 10.311 -14.305 1.00 57.65 N
ATOM 20 N1 A A 20 17.756 12.025 -15.816 1.00 59.40 N
ATOM 21 C2 A A 20 18.227 13.096 -16.468 1.00 59.64 C
ATOM 22 N3 A A 20 19.432 13.657 -16.406 1.00 61.11 N
ATOM 23 C4 A A 20 20.221 12.990 -15.546 1.00 57.35 C
ATOM 24 P U A 21 24.415 18.356 -16.536 1.00 90.03 P
ATOM 25 OP1 U A 21 24.373 19.033 -15.217 1.00 80.86 O
ATOM 26 OP2 U A 21 23.854 19.059 -17.715 1.00 94.33 O
ATOM 27 O5' U A 21 25.899 17.871 -16.849 1.00 82.06 O
TER
ATOM 1 O3' U B 48 21.220 10.012 -4.698 1.00 80.61 O
ATOM 2 P A B 49 21.962 8.584 -4.777 1.00 89.86 P
ATOM 3 OP1 A B 49 22.946 8.544 -3.669 1.00 92.53 O
ATOM 4 OP2 A B 49 22.453 8.420 -6.168 1.00 83.99 O
ATOM 5 O5' A B 49 20.784 7.552 -4.488 1.00 78.24 O
ATOM 6 C5' A B 49 21.066 6.202 -4.152 1.00 74.03 C
ATOM 7 C4' A B 49 20.497 5.248 -5.172 1.00 74.53 C
ATOM 8 O4' A B 49 19.833 5.994 -6.225 1.00 78.52 O
ATOM 9 C3' A B 49 21.508 4.385 -5.910 1.00 72.41 C
ATOM 10 O3' A B 49 21.902 3.244 -5.169 1.00 78.76 O
ATOM 11 C2' A B 49 20.782 4.052 -7.206 1.00 66.34 C
ATOM 12 O2' A B 49 19.831 3.017 -6.998 1.00 65.35 O
ATOM 13 C1' A B 49 20.027 5.354 -7.469 1.00 70.81 C
ATOM 14 N9 A B 49 20.782 6.266 -8.348 1.00 73.97 N
ATOM 15 C8 A B 49 22.091 6.665 -8.238 1.00 71.33 C
ATOM 16 N7 A B 49 22.472 7.497 -9.177 1.00 68.46 N
ATOM 17 C5 A B 49 21.336 7.659 -9.959 1.00 67.02 C
ATOM 18 C6 A B 49 21.079 8.419 -11.114 1.00 65.83 C
ATOM 19 N6 A B 49 21.986 9.190 -11.718 1.00 67.70 N
ATOM 20 N1 A B 49 19.838 8.354 -11.643 1.00 61.53 N
ATOM 21 C2 A B 49 18.928 7.579 -11.042 1.00 67.68 C
ATOM 22 N3 A B 49 19.045 6.822 -9.955 1.00 66.96 N
ATOM 23 C4 A B 49 20.289 6.908 -9.457 1.00 69.29 C
ATOM 24 P A B 50 23.073 2.290 -5.714 1.00 76.21 P
ATOM 25 OP1 A B 50 23.459 1.391 -4.599 1.00 55.62 O
ATOM 26 OP2 A B 50 24.108 3.167 -6.312 1.00 73.05 O
ATOM 27 O5' A B 50 22.345 1.455 -6.856 1.00 72.44 O
TER
Atoms:
OP1: (26.783,14.594,-11.813)
OP2: (24.499,14.426,-10.690)
C3': (23.758,16.186,-15.201)
C1': (22.343,14.368,-15.743)
C5': (25.472,14.472,-14.369)
O4': (23.673,13.901,-15.874)
C8: (21.896,12.316,-14.304)
O2': (21.307,16.440,-14.996)
C6: (18.574,11.379,-14.957)
C5: (19.880,11.875,-14.802)
C4: (20.221,12.990,-15.546)
P: (25.415,14.020,-11.782)
C4': (24.606,14.954,-15.508)
C2': (22.413,15.580,-14.818)
C2: (18.227,13.096,-16.468)
N1: (17.756,12.025,-15.816)
N3: (19.432,13.657,-16.406)
N6: (18.107,10.311,-14.305)
N7: (20.948,11.457,-14.020)
N9: (21.526,13.271,-15.219)
O5': (24.707,14.234,-13.192)
O3': (23.612,16.971,-16.384)
OP2: (24.499,14.426,-10.690)
C3': (23.758,16.186,-15.201)
C1': (22.343,14.368,-15.743)
C5': (25.472,14.472,-14.369)
O4': (23.673,13.901,-15.874)
C8: (21.896,12.316,-14.304)
O2': (21.307,16.440,-14.996)
C6: (18.574,11.379,-14.957)
C5: (19.880,11.875,-14.802)
C4: (20.221,12.990,-15.546)
P: (25.415,14.020,-11.782)
C4': (24.606,14.954,-15.508)
C2': (22.413,15.580,-14.818)
C2: (18.227,13.096,-16.468)
N1: (17.756,12.025,-15.816)
N3: (19.432,13.657,-16.406)
N6: (18.107,10.311,-14.305)
N7: (20.948,11.457,-14.020)
N9: (21.526,13.271,-15.219)
O5': (24.707,14.234,-13.192)
O3': (23.612,16.971,-16.384)
OP1: (22.946,8.544,-3.669)
OP2: (22.453,8.420,-6.168)
C3': (21.508,4.385,-5.910)
C1': (20.027,5.354,-7.469)
C5': (21.066,6.202,-4.152)
O4': (19.833,5.994,-6.225)
C8: (22.091,6.665,-8.238)
O2': (19.831,3.017,-6.998)
C6: (21.079,8.419,-11.114)
C5: (21.336,7.659,-9.959)
C4: (20.289,6.908,-9.457)
P: (21.962,8.584,-4.777)
C4': (20.497,5.248,-5.172)
C2': (20.782,4.052,-7.206)
C2: (18.928,7.579,-11.042)
N1: (19.838,8.354,-11.643)
N3: (19.045,6.822,-9.955)
N6: (21.986,9.190,-11.718)
N7: (22.472,7.497,-9.177)
N9: (20.782,6.266,-8.348)
O5': (20.784,7.552,-4.488)
O3': (21.902,3.244,-5.169)
OP2: (22.453,8.420,-6.168)
C3': (21.508,4.385,-5.910)
C1': (20.027,5.354,-7.469)
C5': (21.066,6.202,-4.152)
O4': (19.833,5.994,-6.225)
C8: (22.091,6.665,-8.238)
O2': (19.831,3.017,-6.998)
C6: (21.079,8.419,-11.114)
C5: (21.336,7.659,-9.959)
C4: (20.289,6.908,-9.457)
P: (21.962,8.584,-4.777)
C4': (20.497,5.248,-5.172)
C2': (20.782,4.052,-7.206)
C2: (18.928,7.579,-11.042)
N1: (19.838,8.354,-11.643)
N3: (19.045,6.822,-9.955)
N6: (21.986,9.190,-11.718)
N7: (22.472,7.497,-9.177)
N9: (20.782,6.266,-8.348)
O5': (20.784,7.552,-4.488)
O3': (21.902,3.244,-5.169)
Image (generated by PyMOL):