ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0448:0443

Extra

PDB:
ATOM 1 O3' A A 447 45.658 139.002 53.011 1.00 37.59 O
ATOM 2 P A A 448 44.223 138.286 52.989 1.00 39.46 P
ATOM 3 OP1 A A 448 43.565 138.508 54.297 1.00 37.21 O
ATOM 4 OP2 A A 448 44.370 136.907 52.461 1.00 38.21 O
ATOM 5 O5' A A 448 43.401 139.139 51.935 1.00 39.12 O
ATOM 6 C5' A A 448 43.823 139.227 50.572 1.00 38.10 C
ATOM 7 C4' A A 448 42.682 139.712 49.721 1.00 38.31 C
ATOM 8 O4' A A 448 41.663 138.681 49.640 1.00 38.91 O
ATOM 9 C3' A A 448 41.975 140.958 50.232 1.00 36.83 C
ATOM 10 O3' A A 448 41.543 141.681 49.097 1.00 36.91 O
ATOM 11 C2' A A 448 40.793 140.377 51.005 1.00 36.71 C
ATOM 12 O2' A A 448 39.673 141.222 51.075 1.00 35.14 O
ATOM 13 C1' A A 448 40.439 139.173 50.147 1.00 38.76 C
ATOM 14 N9 A A 448 39.800 138.087 50.881 1.00 40.89 N
ATOM 15 C8 A A 448 40.167 137.545 52.084 1.00 41.12 C
ATOM 16 N7 A A 448 39.442 136.517 52.440 1.00 43.20 N
ATOM 17 C5 A A 448 38.525 136.382 51.409 1.00 43.80 C
ATOM 18 C6 A A 448 37.491 135.461 51.174 1.00 44.68 C
ATOM 19 N6 A A 448 37.204 134.447 51.988 1.00 45.58 N
ATOM 20 N1 A A 448 36.758 135.612 50.052 1.00 44.89 N
ATOM 21 C2 A A 448 37.057 136.616 49.226 1.00 45.12 C
ATOM 22 N3 A A 448 38.007 137.538 49.331 1.00 45.24 N
ATOM 23 C4 A A 448 38.717 137.360 50.457 1.00 43.28 C
ATOM 24 P C A 449 42.409 142.920 48.581 1.00 36.48 P
ATOM 25 OP1 C A 449 41.670 143.531 47.448 1.00 36.46 O
ATOM 26 OP2 C A 449 43.803 142.456 48.385 1.00 33.65 O
ATOM 27 O5' C A 449 42.343 143.924 49.807 1.00 34.01 O
TER

ATOM 1 O3' U B 442 42.862 131.502 62.126 1.00 32.58 O
ATOM 2 P A B 443 43.633 130.838 60.882 1.00 34.67 P
ATOM 3 OP1 A B 443 44.488 129.749 61.420 1.00 32.61 O
ATOM 4 OP2 A B 443 44.250 131.928 60.093 1.00 32.40 O
ATOM 5 O5' A B 443 42.477 130.194 59.994 1.00 33.38 O
ATOM 6 C5' A B 443 41.709 129.071 60.461 1.00 34.74 C
ATOM 7 C4' A B 443 40.796 128.581 59.368 1.00 34.73 C
ATOM 8 O4' A B 443 39.808 129.598 59.068 1.00 36.87 O
ATOM 9 C3' A B 443 41.497 128.324 58.050 1.00 34.56 C
ATOM 10 O3' A B 443 42.023 127.014 58.029 1.00 32.96 O
ATOM 11 C2' A B 443 40.383 128.506 57.033 1.00 36.27 C
ATOM 12 O2' A B 443 39.577 127.353 56.926 1.00 37.46 O
ATOM 13 C1' A B 443 39.570 129.635 57.672 1.00 37.80 C
ATOM 14 N9 A B 443 39.895 130.978 57.189 1.00 39.95 N
ATOM 15 C8 A B 443 40.483 132.004 57.889 1.00 40.73 C
ATOM 16 N7 A B 443 40.626 133.104 57.196 1.00 40.71 N
ATOM 17 C5 A B 443 40.103 132.784 55.955 1.00 41.89 C
ATOM 18 C6 A B 443 39.958 133.526 54.781 1.00 42.68 C
ATOM 19 N6 A B 443 40.328 134.799 54.666 1.00 42.49 N
ATOM 20 N1 A B 443 39.404 132.911 53.715 1.00 43.98 N
ATOM 21 C2 A B 443 39.012 131.634 53.842 1.00 43.14 C
ATOM 22 N3 A B 443 39.087 130.834 54.897 1.00 41.22 N
ATOM 23 C4 A B 443 39.652 131.476 55.933 1.00 41.57 C
ATOM 24 P G B 444 43.458 126.752 57.380 1.00 34.68 P
ATOM 25 OP1 G B 444 43.674 125.279 57.366 1.00 33.35 O
ATOM 26 OP2 G B 444 44.430 127.630 58.068 1.00 33.22 O
ATOM 27 O5' G B 444 43.297 127.267 55.879 1.00 34.20 O
TER

Atoms:
OP1: (43.565,138.508,54.297)
OP2: (44.370,136.907,52.461)
C3': (41.975,140.958,50.232)
C1': (40.439,139.173,50.147)
C5': (43.823,139.227,50.572)
O4': (41.663,138.681,49.640)
C8: (40.167,137.545,52.084)
O2': (39.673,141.222,51.075)
C6: (37.491,135.461,51.174)
C5: (38.525,136.382,51.409)
C4: (38.717,137.360,50.457)
P: (44.223,138.286,52.989)
C4': (42.682,139.712,49.721)
C2': (40.793,140.377,51.005)
C2: (37.057,136.616,49.226)
N1: (36.758,135.612,50.052)
N3: (38.007,137.538,49.331)
N6: (37.204,134.447,51.988)
N7: (39.442,136.517,52.440)
N9: (39.800,138.087,50.881)
O5': (43.401,139.139,51.935)
O3': (41.543,141.681,49.097)
OP1: (44.488,129.749,61.420)
OP2: (44.250,131.928,60.093)
C3': (41.497,128.324,58.050)
C1': (39.570,129.635,57.672)
C5': (41.709,129.071,60.461)
O4': (39.808,129.598,59.068)
C8: (40.483,132.004,57.889)
O2': (39.577,127.353,56.926)
C6: (39.958,133.526,54.781)
C5: (40.103,132.784,55.955)
C4: (39.652,131.476,55.933)
P: (43.633,130.838,60.882)
C4': (40.796,128.581,59.368)
C2': (40.383,128.506,57.033)
C2: (39.012,131.634,53.842)
N1: (39.404,132.911,53.715)
N3: (39.087,130.834,54.897)
N6: (40.328,134.799,54.666)
N7: (40.626,133.104,57.196)
N9: (39.895,130.978,57.189)
O5': (42.477,130.194,59.994)
O3': (42.023,127.014,58.029)
Image (generated by PyMOL):
PyMOL image
show in jmol