Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0999:01253
Extra
PDB:
ATOM 1 O3' G A 998 43.313 94.984 67.310 1.00 30.53 O
ATOM 2 P A A 999 44.880 94.780 67.608 1.00 32.85 P
ATOM 3 OP1 A A 999 45.423 96.129 67.890 1.00 30.63 O
ATOM 4 OP2 A A 999 45.489 93.955 66.541 1.00 33.32 O
ATOM 5 O5' A A 999 44.904 93.895 68.928 1.00 30.48 O
ATOM 6 C5' A A 999 45.254 94.459 70.193 1.00 27.59 C
ATOM 7 C4' A A 999 44.022 94.970 70.894 1.00 27.30 C
ATOM 8 O4' A A 999 43.088 93.893 71.164 1.00 28.06 O
ATOM 9 C3' A A 999 44.311 95.553 72.255 1.00 27.44 C
ATOM 10 O3' A A 999 44.769 96.884 72.101 1.00 29.10 O
ATOM 11 C2' A A 999 42.958 95.454 72.945 1.00 25.95 C
ATOM 12 O2' A A 999 42.065 96.468 72.544 1.00 25.74 O
ATOM 13 C1' A A 999 42.456 94.108 72.421 1.00 25.73 C
ATOM 14 N9 A A 999 42.803 92.993 73.308 1.00 26.09 N
ATOM 15 C8 A A 999 43.634 91.934 73.039 1.00 24.02 C
ATOM 16 N7 A A 999 43.765 91.100 74.039 1.00 22.67 N
ATOM 17 C5 A A 999 42.965 91.639 75.033 1.00 21.23 C
ATOM 18 C6 A A 999 42.684 91.226 76.344 1.00 20.97 C
ATOM 19 N6 A A 999 43.182 90.119 76.896 1.00 19.91 N
ATOM 20 N1 A A 999 41.861 91.995 77.080 1.00 21.38 N
ATOM 21 C2 A A 999 41.351 93.097 76.528 1.00 24.63 C
ATOM 22 N3 A A 999 41.532 93.586 75.302 1.00 25.86 N
ATOM 23 C4 A A 999 42.363 92.802 74.598 1.00 23.54 C
ATOM 24 P U A1000 46.187 97.311 72.707 1.00 28.75 P
ATOM 25 OP1 U A1000 46.491 98.628 72.115 1.00 30.66 O
ATOM 26 OP2 U A1000 47.145 96.179 72.545 1.00 24.03 O
ATOM 27 O5' U A1000 45.913 97.534 74.259 1.00 26.28 O
TER
ATOM 1 O3' U B1252 37.747 103.674 82.262 1.00 29.01 O
ATOM 2 P A B1253 37.711 103.521 80.671 1.00 30.34 P
ATOM 3 OP1 A B1253 38.083 104.851 80.153 1.00 30.69 O
ATOM 4 OP2 A B1253 36.400 102.912 80.292 1.00 31.72 O
ATOM 5 O5' A B1253 38.894 102.507 80.337 1.00 27.08 O
ATOM 6 C5' A B1253 40.256 102.893 80.541 1.00 27.11 C
ATOM 7 C4' A B1253 41.191 101.771 80.165 1.00 27.84 C
ATOM 8 O4' A B1253 41.069 100.680 81.105 1.00 30.01 O
ATOM 9 C3' A B1253 40.964 101.125 78.816 1.00 27.80 C
ATOM 10 O3' A B1253 41.558 101.900 77.788 1.00 29.57 O
ATOM 11 C2' A B1253 41.676 99.794 78.991 1.00 29.00 C
ATOM 12 O2' A B1253 43.075 99.911 78.884 1.00 29.37 O
ATOM 13 C1' A B1253 41.331 99.455 80.442 1.00 29.54 C
ATOM 14 N9 A B1253 40.147 98.600 80.553 1.00 30.04 N
ATOM 15 C8 A B1253 38.872 98.948 80.934 1.00 29.78 C
ATOM 16 N7 A B1253 38.024 97.950 80.905 1.00 30.97 N
ATOM 17 C5 A B1253 38.792 96.871 80.486 1.00 28.97 C
ATOM 18 C6 A B1253 38.481 95.519 80.258 1.00 28.48 C
ATOM 19 N6 A B1253 37.263 94.997 80.431 1.00 27.26 N
ATOM 20 N1 A B1253 39.478 94.709 79.843 1.00 28.94 N
ATOM 21 C2 A B1253 40.699 95.229 79.676 1.00 30.05 C
ATOM 22 N3 A B1253 41.114 96.477 79.863 1.00 28.69 N
ATOM 23 C4 A B1253 40.101 97.257 80.271 1.00 28.49 C
ATOM 24 P G B1254 40.740 102.213 76.444 1.00 30.18 P
ATOM 25 OP1 G B1254 41.727 102.844 75.539 1.00 30.33 O
ATOM 26 OP2 G B1254 39.482 102.935 76.781 1.00 26.40 O
ATOM 27 O5' G B1254 40.380 100.774 75.867 1.00 27.89 O
TER
ATOM 2 P A A 999 44.880 94.780 67.608 1.00 32.85 P
ATOM 3 OP1 A A 999 45.423 96.129 67.890 1.00 30.63 O
ATOM 4 OP2 A A 999 45.489 93.955 66.541 1.00 33.32 O
ATOM 5 O5' A A 999 44.904 93.895 68.928 1.00 30.48 O
ATOM 6 C5' A A 999 45.254 94.459 70.193 1.00 27.59 C
ATOM 7 C4' A A 999 44.022 94.970 70.894 1.00 27.30 C
ATOM 8 O4' A A 999 43.088 93.893 71.164 1.00 28.06 O
ATOM 9 C3' A A 999 44.311 95.553 72.255 1.00 27.44 C
ATOM 10 O3' A A 999 44.769 96.884 72.101 1.00 29.10 O
ATOM 11 C2' A A 999 42.958 95.454 72.945 1.00 25.95 C
ATOM 12 O2' A A 999 42.065 96.468 72.544 1.00 25.74 O
ATOM 13 C1' A A 999 42.456 94.108 72.421 1.00 25.73 C
ATOM 14 N9 A A 999 42.803 92.993 73.308 1.00 26.09 N
ATOM 15 C8 A A 999 43.634 91.934 73.039 1.00 24.02 C
ATOM 16 N7 A A 999 43.765 91.100 74.039 1.00 22.67 N
ATOM 17 C5 A A 999 42.965 91.639 75.033 1.00 21.23 C
ATOM 18 C6 A A 999 42.684 91.226 76.344 1.00 20.97 C
ATOM 19 N6 A A 999 43.182 90.119 76.896 1.00 19.91 N
ATOM 20 N1 A A 999 41.861 91.995 77.080 1.00 21.38 N
ATOM 21 C2 A A 999 41.351 93.097 76.528 1.00 24.63 C
ATOM 22 N3 A A 999 41.532 93.586 75.302 1.00 25.86 N
ATOM 23 C4 A A 999 42.363 92.802 74.598 1.00 23.54 C
ATOM 24 P U A1000 46.187 97.311 72.707 1.00 28.75 P
ATOM 25 OP1 U A1000 46.491 98.628 72.115 1.00 30.66 O
ATOM 26 OP2 U A1000 47.145 96.179 72.545 1.00 24.03 O
ATOM 27 O5' U A1000 45.913 97.534 74.259 1.00 26.28 O
TER
ATOM 1 O3' U B1252 37.747 103.674 82.262 1.00 29.01 O
ATOM 2 P A B1253 37.711 103.521 80.671 1.00 30.34 P
ATOM 3 OP1 A B1253 38.083 104.851 80.153 1.00 30.69 O
ATOM 4 OP2 A B1253 36.400 102.912 80.292 1.00 31.72 O
ATOM 5 O5' A B1253 38.894 102.507 80.337 1.00 27.08 O
ATOM 6 C5' A B1253 40.256 102.893 80.541 1.00 27.11 C
ATOM 7 C4' A B1253 41.191 101.771 80.165 1.00 27.84 C
ATOM 8 O4' A B1253 41.069 100.680 81.105 1.00 30.01 O
ATOM 9 C3' A B1253 40.964 101.125 78.816 1.00 27.80 C
ATOM 10 O3' A B1253 41.558 101.900 77.788 1.00 29.57 O
ATOM 11 C2' A B1253 41.676 99.794 78.991 1.00 29.00 C
ATOM 12 O2' A B1253 43.075 99.911 78.884 1.00 29.37 O
ATOM 13 C1' A B1253 41.331 99.455 80.442 1.00 29.54 C
ATOM 14 N9 A B1253 40.147 98.600 80.553 1.00 30.04 N
ATOM 15 C8 A B1253 38.872 98.948 80.934 1.00 29.78 C
ATOM 16 N7 A B1253 38.024 97.950 80.905 1.00 30.97 N
ATOM 17 C5 A B1253 38.792 96.871 80.486 1.00 28.97 C
ATOM 18 C6 A B1253 38.481 95.519 80.258 1.00 28.48 C
ATOM 19 N6 A B1253 37.263 94.997 80.431 1.00 27.26 N
ATOM 20 N1 A B1253 39.478 94.709 79.843 1.00 28.94 N
ATOM 21 C2 A B1253 40.699 95.229 79.676 1.00 30.05 C
ATOM 22 N3 A B1253 41.114 96.477 79.863 1.00 28.69 N
ATOM 23 C4 A B1253 40.101 97.257 80.271 1.00 28.49 C
ATOM 24 P G B1254 40.740 102.213 76.444 1.00 30.18 P
ATOM 25 OP1 G B1254 41.727 102.844 75.539 1.00 30.33 O
ATOM 26 OP2 G B1254 39.482 102.935 76.781 1.00 26.40 O
ATOM 27 O5' G B1254 40.380 100.774 75.867 1.00 27.89 O
TER
Atoms:
OP1: (45.423,96.129,67.890)
OP2: (45.489,93.955,66.541)
C3': (44.311,95.553,72.255)
C1': (42.456,94.108,72.421)
C5': (45.254,94.459,70.193)
O4': (43.088,93.893,71.164)
C8: (43.634,91.934,73.039)
O2': (42.065,96.468,72.544)
C6: (42.684,91.226,76.344)
C5: (42.965,91.639,75.033)
C4: (42.363,92.802,74.598)
P: (44.880,94.780,67.608)
C4': (44.022,94.970,70.894)
C2': (42.958,95.454,72.945)
C2: (41.351,93.097,76.528)
N1: (41.861,91.995,77.080)
N3: (41.532,93.586,75.302)
N6: (43.182,90.119,76.896)
N7: (43.765,91.100,74.039)
N9: (42.803,92.993,73.308)
O5': (44.904,93.895,68.928)
O3': (44.769,96.884,72.101)
OP2: (45.489,93.955,66.541)
C3': (44.311,95.553,72.255)
C1': (42.456,94.108,72.421)
C5': (45.254,94.459,70.193)
O4': (43.088,93.893,71.164)
C8: (43.634,91.934,73.039)
O2': (42.065,96.468,72.544)
C6: (42.684,91.226,76.344)
C5: (42.965,91.639,75.033)
C4: (42.363,92.802,74.598)
P: (44.880,94.780,67.608)
C4': (44.022,94.970,70.894)
C2': (42.958,95.454,72.945)
C2: (41.351,93.097,76.528)
N1: (41.861,91.995,77.080)
N3: (41.532,93.586,75.302)
N6: (43.182,90.119,76.896)
N7: (43.765,91.100,74.039)
N9: (42.803,92.993,73.308)
O5': (44.904,93.895,68.928)
O3': (44.769,96.884,72.101)
OP1: (38.083,104.851,80.153)
OP2: (36.400,102.912,80.292)
C3': (40.964,101.125,78.816)
C1': (41.331,99.455,80.442)
C5': (40.256,102.893,80.541)
O4': (41.069,100.680,81.105)
C8: (38.872,98.948,80.934)
O2': (43.075,99.911,78.884)
C6: (38.481,95.519,80.258)
C5: (38.792,96.871,80.486)
C4: (40.101,97.257,80.271)
P: (37.711,103.521,80.671)
C4': (41.191,101.771,80.165)
C2': (41.676,99.794,78.991)
C2: (40.699,95.229,79.676)
N1: (39.478,94.709,79.843)
N3: (41.114,96.477,79.863)
N6: (37.263,94.997,80.431)
N7: (38.024,97.950,80.905)
N9: (40.147,98.600,80.553)
O5': (38.894,102.507,80.337)
O3': (41.558,101.900,77.788)
OP2: (36.400,102.912,80.292)
C3': (40.964,101.125,78.816)
C1': (41.331,99.455,80.442)
C5': (40.256,102.893,80.541)
O4': (41.069,100.680,81.105)
C8: (38.872,98.948,80.934)
O2': (43.075,99.911,78.884)
C6: (38.481,95.519,80.258)
C5: (38.792,96.871,80.486)
C4: (40.101,97.257,80.271)
P: (37.711,103.521,80.671)
C4': (41.191,101.771,80.165)
C2': (41.676,99.794,78.991)
C2: (40.699,95.229,79.676)
N1: (39.478,94.709,79.843)
N3: (41.114,96.477,79.863)
N6: (37.263,94.997,80.431)
N7: (38.024,97.950,80.905)
N9: (40.147,98.600,80.553)
O5': (38.894,102.507,80.337)
O3': (41.558,101.900,77.788)
Image (generated by PyMOL):