Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12560:12708
Extra
PDB:
ATOM 1 O3' U A2559 19.035 -6.003 78.411 1.00 34.92 O
ATOM 2 P A A2560 20.106 -5.402 77.413 1.00 48.47 P
ATOM 3 OP1 A A2560 19.713 -5.795 76.068 1.00 48.42 O
ATOM 4 OP2 A A2560 21.439 -5.787 77.906 1.00 48.36 O
ATOM 5 O5' A A2560 19.875 -3.856 77.595 1.00 48.56 O
ATOM 6 C5' A A2560 20.200 -3.200 78.822 1.00 48.64 C
ATOM 7 C4' A A2560 19.005 -2.486 79.419 1.00 48.83 C
ATOM 8 O4' A A2560 18.661 -1.352 78.603 1.00 48.87 O
ATOM 9 C3' A A2560 17.752 -3.308 79.510 1.00 48.92 C
ATOM 10 O3' A A2560 16.984 -2.865 80.616 1.00 49.11 O
ATOM 11 C2' A A2560 17.058 -3.006 78.202 1.00 48.92 C
ATOM 12 O2' A A2560 15.684 -3.183 78.222 1.00 49.07 O
ATOM 13 C1' A A2560 17.431 -1.568 77.955 1.00 48.95 C
ATOM 14 N9 A A2560 17.663 -1.282 76.553 1.00 48.85 N
ATOM 15 C8 A A2560 18.932 -1.223 76.086 1.00 48.70 C
ATOM 16 N7 A A2560 19.048 -0.958 74.824 1.00 48.64 N
ATOM 17 C5 A A2560 17.749 -0.812 74.441 1.00 48.77 C
ATOM 18 C6 A A2560 17.292 -0.482 73.167 1.00 48.80 C
ATOM 19 N6 A A2560 18.145 -0.288 72.124 1.00 48.68 N
ATOM 20 N1 A A2560 15.941 -0.374 73.072 1.00 48.96 N
ATOM 21 C2 A A2560 15.163 -0.585 74.176 1.00 49.08 C
ATOM 22 N3 A A2560 15.495 -0.888 75.440 1.00 49.07 N
ATOM 23 C4 A A2560 16.849 -0.985 75.489 1.00 48.91 C
ATOM 24 P C A2561 17.267 -3.543 82.052 1.00 36.79 P
ATOM 25 OP1 C A2561 17.580 -4.989 81.786 1.00 36.67 O
ATOM 26 OP2 C A2561 16.117 -3.212 82.975 1.00 37.01 O
ATOM 27 O5' C A2561 18.560 -2.780 82.542 1.00 36.74 O
TER
ATOM 1 O3' U B2707 17.453 1.869 77.270 1.00 48.96 O
ATOM 2 P A B2708 16.373 2.249 78.400 1.00 39.17 P
ATOM 3 OP1 A B2708 15.615 1.009 78.747 1.00 39.18 O
ATOM 4 OP2 A B2708 15.644 3.344 77.904 1.00 39.31 O
ATOM 5 O5' A B2708 17.279 2.722 79.625 1.00 39.19 O
ATOM 6 C5' A B2708 17.527 1.861 80.721 1.00 39.18 C
ATOM 7 C4' A B2708 18.207 2.602 81.819 1.00 39.26 C
ATOM 8 O4' A B2708 19.088 3.599 81.234 1.00 39.21 O
ATOM 9 C3' A B2708 17.321 3.428 82.727 1.00 39.51 C
ATOM 10 O3' A B2708 16.642 2.675 83.716 1.00 39.61 O
ATOM 11 C2' A B2708 18.321 4.392 83.304 1.00 39.55 C
ATOM 12 O2' A B2708 19.143 3.714 84.228 1.00 39.50 O
ATOM 13 C1' A B2708 19.148 4.721 82.068 1.00 39.38 C
ATOM 14 N9 A B2708 18.585 5.865 81.337 1.00 39.49 N
ATOM 15 C8 A B2708 17.918 5.868 80.145 1.00 39.46 C
ATOM 16 N7 A B2708 17.496 7.045 79.773 1.00 39.61 N
ATOM 17 C5 A B2708 17.880 7.879 80.789 1.00 39.74 C
ATOM 18 C6 A B2708 17.756 9.258 80.981 1.00 39.94 C
ATOM 19 N6 A B2708 17.160 10.098 80.142 1.00 40.05 N
ATOM 20 N1 A B2708 18.291 9.771 82.108 1.00 40.05 N
ATOM 21 C2 A B2708 18.895 8.943 82.953 1.00 39.97 C
ATOM 22 N3 A B2708 19.101 7.643 82.881 1.00 39.78 N
ATOM 23 C4 A B2708 18.555 7.165 81.759 1.00 39.67 C
ATOM 24 P G B2709 15.102 2.338 83.524 1.00 37.29 P
ATOM 25 OP1 G B2709 14.934 0.941 83.841 1.00 37.23 O
ATOM 26 OP2 G B2709 14.746 2.784 82.176 1.00 37.25 O
ATOM 27 O5' G B2709 14.353 3.206 84.633 1.00 37.57 O
TER
ATOM 2 P A A2560 20.106 -5.402 77.413 1.00 48.47 P
ATOM 3 OP1 A A2560 19.713 -5.795 76.068 1.00 48.42 O
ATOM 4 OP2 A A2560 21.439 -5.787 77.906 1.00 48.36 O
ATOM 5 O5' A A2560 19.875 -3.856 77.595 1.00 48.56 O
ATOM 6 C5' A A2560 20.200 -3.200 78.822 1.00 48.64 C
ATOM 7 C4' A A2560 19.005 -2.486 79.419 1.00 48.83 C
ATOM 8 O4' A A2560 18.661 -1.352 78.603 1.00 48.87 O
ATOM 9 C3' A A2560 17.752 -3.308 79.510 1.00 48.92 C
ATOM 10 O3' A A2560 16.984 -2.865 80.616 1.00 49.11 O
ATOM 11 C2' A A2560 17.058 -3.006 78.202 1.00 48.92 C
ATOM 12 O2' A A2560 15.684 -3.183 78.222 1.00 49.07 O
ATOM 13 C1' A A2560 17.431 -1.568 77.955 1.00 48.95 C
ATOM 14 N9 A A2560 17.663 -1.282 76.553 1.00 48.85 N
ATOM 15 C8 A A2560 18.932 -1.223 76.086 1.00 48.70 C
ATOM 16 N7 A A2560 19.048 -0.958 74.824 1.00 48.64 N
ATOM 17 C5 A A2560 17.749 -0.812 74.441 1.00 48.77 C
ATOM 18 C6 A A2560 17.292 -0.482 73.167 1.00 48.80 C
ATOM 19 N6 A A2560 18.145 -0.288 72.124 1.00 48.68 N
ATOM 20 N1 A A2560 15.941 -0.374 73.072 1.00 48.96 N
ATOM 21 C2 A A2560 15.163 -0.585 74.176 1.00 49.08 C
ATOM 22 N3 A A2560 15.495 -0.888 75.440 1.00 49.07 N
ATOM 23 C4 A A2560 16.849 -0.985 75.489 1.00 48.91 C
ATOM 24 P C A2561 17.267 -3.543 82.052 1.00 36.79 P
ATOM 25 OP1 C A2561 17.580 -4.989 81.786 1.00 36.67 O
ATOM 26 OP2 C A2561 16.117 -3.212 82.975 1.00 37.01 O
ATOM 27 O5' C A2561 18.560 -2.780 82.542 1.00 36.74 O
TER
ATOM 1 O3' U B2707 17.453 1.869 77.270 1.00 48.96 O
ATOM 2 P A B2708 16.373 2.249 78.400 1.00 39.17 P
ATOM 3 OP1 A B2708 15.615 1.009 78.747 1.00 39.18 O
ATOM 4 OP2 A B2708 15.644 3.344 77.904 1.00 39.31 O
ATOM 5 O5' A B2708 17.279 2.722 79.625 1.00 39.19 O
ATOM 6 C5' A B2708 17.527 1.861 80.721 1.00 39.18 C
ATOM 7 C4' A B2708 18.207 2.602 81.819 1.00 39.26 C
ATOM 8 O4' A B2708 19.088 3.599 81.234 1.00 39.21 O
ATOM 9 C3' A B2708 17.321 3.428 82.727 1.00 39.51 C
ATOM 10 O3' A B2708 16.642 2.675 83.716 1.00 39.61 O
ATOM 11 C2' A B2708 18.321 4.392 83.304 1.00 39.55 C
ATOM 12 O2' A B2708 19.143 3.714 84.228 1.00 39.50 O
ATOM 13 C1' A B2708 19.148 4.721 82.068 1.00 39.38 C
ATOM 14 N9 A B2708 18.585 5.865 81.337 1.00 39.49 N
ATOM 15 C8 A B2708 17.918 5.868 80.145 1.00 39.46 C
ATOM 16 N7 A B2708 17.496 7.045 79.773 1.00 39.61 N
ATOM 17 C5 A B2708 17.880 7.879 80.789 1.00 39.74 C
ATOM 18 C6 A B2708 17.756 9.258 80.981 1.00 39.94 C
ATOM 19 N6 A B2708 17.160 10.098 80.142 1.00 40.05 N
ATOM 20 N1 A B2708 18.291 9.771 82.108 1.00 40.05 N
ATOM 21 C2 A B2708 18.895 8.943 82.953 1.00 39.97 C
ATOM 22 N3 A B2708 19.101 7.643 82.881 1.00 39.78 N
ATOM 23 C4 A B2708 18.555 7.165 81.759 1.00 39.67 C
ATOM 24 P G B2709 15.102 2.338 83.524 1.00 37.29 P
ATOM 25 OP1 G B2709 14.934 0.941 83.841 1.00 37.23 O
ATOM 26 OP2 G B2709 14.746 2.784 82.176 1.00 37.25 O
ATOM 27 O5' G B2709 14.353 3.206 84.633 1.00 37.57 O
TER
Atoms:
OP1: (19.713,-5.795,76.068)
OP2: (21.439,-5.787,77.906)
C3': (17.752,-3.308,79.510)
C1': (17.431,-1.568,77.955)
C5': (20.200,-3.200,78.822)
O4': (18.661,-1.352,78.603)
C8: (18.932,-1.223,76.086)
O2': (15.684,-3.183,78.222)
C6: (17.292,-0.482,73.167)
C5: (17.749,-0.812,74.441)
C4: (16.849,-0.985,75.489)
P: (20.106,-5.402,77.413)
C4': (19.005,-2.486,79.419)
C2': (17.058,-3.006,78.202)
C2: (15.163,-0.585,74.176)
N1: (15.941,-0.374,73.072)
N3: (15.495,-0.888,75.440)
N6: (18.145,-0.288,72.124)
N7: (19.048,-0.958,74.824)
N9: (17.663,-1.282,76.553)
O5': (19.875,-3.856,77.595)
O3': (16.984,-2.865,80.616)
OP2: (21.439,-5.787,77.906)
C3': (17.752,-3.308,79.510)
C1': (17.431,-1.568,77.955)
C5': (20.200,-3.200,78.822)
O4': (18.661,-1.352,78.603)
C8: (18.932,-1.223,76.086)
O2': (15.684,-3.183,78.222)
C6: (17.292,-0.482,73.167)
C5: (17.749,-0.812,74.441)
C4: (16.849,-0.985,75.489)
P: (20.106,-5.402,77.413)
C4': (19.005,-2.486,79.419)
C2': (17.058,-3.006,78.202)
C2: (15.163,-0.585,74.176)
N1: (15.941,-0.374,73.072)
N3: (15.495,-0.888,75.440)
N6: (18.145,-0.288,72.124)
N7: (19.048,-0.958,74.824)
N9: (17.663,-1.282,76.553)
O5': (19.875,-3.856,77.595)
O3': (16.984,-2.865,80.616)
OP1: (15.615,1.009,78.747)
OP2: (15.644,3.344,77.904)
C3': (17.321,3.428,82.727)
C1': (19.148,4.721,82.068)
C5': (17.527,1.861,80.721)
O4': (19.088,3.599,81.234)
C8: (17.918,5.868,80.145)
O2': (19.143,3.714,84.228)
C6: (17.756,9.258,80.981)
C5: (17.880,7.879,80.789)
C4: (18.555,7.165,81.759)
P: (16.373,2.249,78.400)
C4': (18.207,2.602,81.819)
C2': (18.321,4.392,83.304)
C2: (18.895,8.943,82.953)
N1: (18.291,9.771,82.108)
N3: (19.101,7.643,82.881)
N6: (17.160,10.098,80.142)
N7: (17.496,7.045,79.773)
N9: (18.585,5.865,81.337)
O5': (17.279,2.722,79.625)
O3': (16.642,2.675,83.716)
OP2: (15.644,3.344,77.904)
C3': (17.321,3.428,82.727)
C1': (19.148,4.721,82.068)
C5': (17.527,1.861,80.721)
O4': (19.088,3.599,81.234)
C8: (17.918,5.868,80.145)
O2': (19.143,3.714,84.228)
C6: (17.756,9.258,80.981)
C5: (17.880,7.879,80.789)
C4: (18.555,7.165,81.759)
P: (16.373,2.249,78.400)
C4': (18.207,2.602,81.819)
C2': (18.321,4.392,83.304)
C2: (18.895,8.943,82.953)
N1: (18.291,9.771,82.108)
N3: (19.101,7.643,82.881)
N6: (17.160,10.098,80.142)
N7: (17.496,7.045,79.773)
N9: (18.585,5.865,81.337)
O5': (17.279,2.722,79.625)
O3': (16.642,2.675,83.716)
Image (generated by PyMOL):