ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0999:01253

Extra

PDB:
ATOM 1 O3' G A 998 43.393 94.948 67.277 1.00 35.47 O
ATOM 2 P A A 999 44.948 94.699 67.583 1.00 35.06 P
ATOM 3 OP1 A A 999 45.552 96.028 67.834 1.00 33.08 O
ATOM 4 OP2 A A 999 45.511 93.826 66.539 1.00 35.57 O
ATOM 5 O5' A A 999 44.920 93.852 68.924 1.00 33.85 O
ATOM 6 C5' A A 999 45.282 94.443 70.173 1.00 32.85 C
ATOM 7 C4' A A 999 44.052 94.921 70.892 1.00 31.62 C
ATOM 8 O4' A A 999 43.151 93.816 71.163 1.00 31.24 O
ATOM 9 C3' A A 999 44.335 95.499 72.255 1.00 31.85 C
ATOM 10 O3' A A 999 44.802 96.828 72.106 1.00 33.36 O
ATOM 11 C2' A A 999 42.977 95.373 72.937 1.00 30.73 C
ATOM 12 O2' A A 999 42.041 96.341 72.526 1.00 29.69 O
ATOM 13 C1' A A 999 42.510 94.015 72.413 1.00 29.68 C
ATOM 14 N9 A A 999 42.879 92.913 73.305 1.00 30.08 N
ATOM 15 C8 A A 999 43.717 91.856 73.046 1.00 29.25 C
ATOM 16 N7 A A 999 43.870 91.043 74.064 1.00 29.33 N
ATOM 17 C5 A A 999 43.075 91.594 75.058 1.00 28.21 C
ATOM 18 C6 A A 999 42.820 91.214 76.383 1.00 27.06 C
ATOM 19 N6 A A 999 43.343 90.136 76.959 1.00 26.28 N
ATOM 20 N1 A A 999 41.996 91.992 77.110 1.00 27.93 N
ATOM 21 C2 A A 999 41.464 93.075 76.538 1.00 28.64 C
ATOM 22 N3 A A 999 41.623 93.535 75.304 1.00 29.46 N
ATOM 23 C4 A A 999 42.453 92.741 74.605 1.00 29.56 C
ATOM 24 P U A1000 46.229 97.245 72.712 1.00 35.57 P
ATOM 25 OP1 U A1000 46.499 98.601 72.166 1.00 35.02 O
ATOM 26 OP2 U A1000 47.230 96.148 72.503 1.00 31.10 O
ATOM 27 O5' U A1000 45.933 97.402 74.267 1.00 31.49 O
TER

ATOM 1 O3' U B1252 37.915 103.530 82.254 1.00 31.77 O
ATOM 2 P A B1253 37.789 103.400 80.669 1.00 31.93 P
ATOM 3 OP1 A B1253 38.096 104.736 80.135 1.00 33.14 O
ATOM 4 OP2 A B1253 36.491 102.757 80.347 1.00 31.87 O
ATOM 5 O5' A B1253 38.971 102.414 80.274 1.00 30.09 O
ATOM 6 C5' A B1253 40.328 102.813 80.460 1.00 30.63 C
ATOM 7 C4' A B1253 41.258 101.689 80.109 1.00 30.60 C
ATOM 8 O4' A B1253 41.107 100.611 81.057 1.00 31.66 O
ATOM 9 C3' A B1253 41.020 101.035 78.767 1.00 30.93 C
ATOM 10 O3' A B1253 41.615 101.803 77.734 1.00 33.79 O
ATOM 11 C2' A B1253 41.706 99.687 78.948 1.00 31.21 C
ATOM 12 O2' A B1253 43.105 99.740 78.813 1.00 30.00 O
ATOM 13 C1' A B1253 41.383 99.379 80.409 1.00 32.56 C
ATOM 14 N9 A B1253 40.224 98.498 80.549 1.00 34.29 N
ATOM 15 C8 A B1253 38.960 98.797 81.000 1.00 34.69 C
ATOM 16 N7 A B1253 38.142 97.775 80.983 1.00 34.68 N
ATOM 17 C5 A B1253 38.918 96.733 80.489 1.00 32.27 C
ATOM 18 C6 A B1253 38.633 95.390 80.220 1.00 30.81 C
ATOM 19 N6 A B1253 37.431 94.837 80.396 1.00 31.11 N
ATOM 20 N1 A B1253 39.633 94.620 79.748 1.00 30.74 N
ATOM 21 C2 A B1253 40.828 95.172 79.548 1.00 32.06 C
ATOM 22 N3 A B1253 41.218 96.423 79.751 1.00 33.81 N
ATOM 23 C4 A B1253 40.202 97.162 80.228 1.00 33.32 C
ATOM 24 P G B1254 40.778 102.155 76.414 1.00 34.05 P
ATOM 25 OP1 G B1254 41.728 102.795 75.485 1.00 34.58 O
ATOM 26 OP2 G B1254 39.545 102.877 76.821 1.00 33.69 O
ATOM 27 O5' G B1254 40.406 100.735 75.805 1.00 33.07 O
TER

Atoms:
OP1: (45.552,96.028,67.834)
OP2: (45.511,93.826,66.539)
C3': (44.335,95.499,72.255)
C1': (42.510,94.015,72.413)
C5': (45.282,94.443,70.173)
O4': (43.151,93.816,71.163)
C8: (43.717,91.856,73.046)
O2': (42.041,96.341,72.526)
C6: (42.820,91.214,76.383)
C5: (43.075,91.594,75.058)
C4: (42.453,92.741,74.605)
P: (44.948,94.699,67.583)
C4': (44.052,94.921,70.892)
C2': (42.977,95.373,72.937)
C2: (41.464,93.075,76.538)
N1: (41.996,91.992,77.110)
N3: (41.623,93.535,75.304)
N6: (43.343,90.136,76.959)
N7: (43.870,91.043,74.064)
N9: (42.879,92.913,73.305)
O5': (44.920,93.852,68.924)
O3': (44.802,96.828,72.106)
OP1: (38.096,104.736,80.135)
OP2: (36.491,102.757,80.347)
C3': (41.020,101.035,78.767)
C1': (41.383,99.379,80.409)
C5': (40.328,102.813,80.460)
O4': (41.107,100.611,81.057)
C8: (38.960,98.797,81.000)
O2': (43.105,99.740,78.813)
C6: (38.633,95.390,80.220)
C5: (38.918,96.733,80.489)
C4: (40.202,97.162,80.228)
P: (37.789,103.400,80.669)
C4': (41.258,101.689,80.109)
C2': (41.706,99.687,78.948)
C2: (40.828,95.172,79.548)
N1: (39.633,94.620,79.748)
N3: (41.218,96.423,79.751)
N6: (37.431,94.837,80.396)
N7: (38.142,97.775,80.983)
N9: (40.224,98.498,80.549)
O5': (38.971,102.414,80.274)
O3': (41.615,101.803,77.734)
Image (generated by PyMOL):
PyMOL image
show in jmol