Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A22:A54
Extra
PDB:
ATOM 1 O3' A A 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 2 P A A 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 3 OP1 A A 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 4 OP2 A A 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 5 O5' A A 22 -11.448 7.683 25.347 1.00 33.18 O
ATOM 6 C5' A A 22 -12.816 7.401 25.598 1.00 29.21 C
ATOM 7 C4' A A 22 -13.415 6.521 24.526 1.00 28.74 C
ATOM 8 O4' A A 22 -13.299 7.166 23.230 1.00 29.36 O
ATOM 9 C3' A A 22 -12.755 5.169 24.306 1.00 25.92 C
ATOM 10 O3' A A 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 11 C2' A A 22 -13.223 4.816 22.903 1.00 31.00 C
ATOM 12 O2' A A 22 -14.577 4.392 22.918 1.00 33.59 O
ATOM 13 C1' A A 22 -13.158 6.182 22.223 1.00 28.74 C
ATOM 14 N9 A A 22 -11.871 6.387 21.532 1.00 28.30 N
ATOM 15 C8 A A 22 -10.820 7.198 21.880 1.00 28.39 C
ATOM 16 N7 A A 22 -9.813 7.138 21.039 1.00 27.28 N
ATOM 17 C5 A A 22 -10.227 6.224 20.077 1.00 27.06 C
ATOM 18 C6 A A 22 -9.619 5.719 18.911 1.00 25.94 C
ATOM 19 N6 A A 22 -8.404 6.079 18.493 1.00 25.54 N
ATOM 20 N1 A A 22 -10.308 4.818 18.174 1.00 24.17 N
ATOM 21 C2 A A 22 -11.527 4.455 18.589 1.00 23.60 C
ATOM 22 N3 A A 22 -12.203 4.858 19.665 1.00 26.30 N
ATOM 23 C4 A A 22 -11.492 5.753 20.373 1.00 26.39 C
ATOM 24 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 25 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 26 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 27 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
TER
ATOM 1 O3' G B 53 1.056 13.463 22.100 1.00 35.88 O
ATOM 2 P A B 54 0.234 14.676 21.444 1.00 40.45 P
ATOM 3 OP1 A B 54 1.232 15.644 20.921 1.00 45.22 O
ATOM 4 OP2 A B 54 -0.750 15.140 22.452 1.00 31.08 O
ATOM 5 O5' A B 54 -0.522 13.964 20.238 1.00 34.39 O
ATOM 6 C5' A B 54 0.106 12.923 19.500 1.00 30.53 C
ATOM 7 C4' A B 54 -0.748 12.463 18.349 1.00 35.75 C
ATOM 8 O4' A B 54 -1.643 11.409 18.802 1.00 35.18 O
ATOM 9 C3' A B 54 -1.638 13.540 17.720 1.00 37.74 C
ATOM 10 O3' A B 54 -1.701 13.335 16.313 1.00 40.20 O
ATOM 11 C2' A B 54 -3.001 13.248 18.341 1.00 37.11 C
ATOM 12 O2' A B 54 -4.106 13.704 17.587 1.00 35.76 O
ATOM 13 C1' A B 54 -2.965 11.730 18.427 1.00 37.02 C
ATOM 14 N9 A B 54 -3.885 11.168 19.417 1.00 35.16 N
ATOM 15 C8 A B 54 -4.074 11.595 20.704 1.00 33.58 C
ATOM 16 N7 A B 54 -4.985 10.914 21.349 1.00 34.19 N
ATOM 17 C5 A B 54 -5.434 9.986 20.420 1.00 31.04 C
ATOM 18 C6 A B 54 -6.403 8.971 20.493 1.00 29.46 C
ATOM 19 N6 A B 54 -7.118 8.720 21.592 1.00 29.61 N
ATOM 20 N1 A B 54 -6.612 8.217 19.390 1.00 26.38 N
ATOM 21 C2 A B 54 -5.888 8.476 18.292 1.00 28.28 C
ATOM 22 N3 A B 54 -4.949 9.402 18.102 1.00 29.09 N
ATOM 23 C4 A B 54 -4.769 10.133 19.218 1.00 30.99 C
ATOM 24 P A B 55 -0.711 14.136 15.340 1.00 43.95 P
ATOM 25 OP1 A B 55 0.272 13.154 14.811 1.00 34.97 O
ATOM 26 OP2 A B 55 -0.212 15.305 16.097 1.00 38.25 O
ATOM 27 O5' A B 55 -1.678 14.625 14.170 1.00 38.62 O
TER
ATOM 2 P A A 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 3 OP1 A A 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 4 OP2 A A 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 5 O5' A A 22 -11.448 7.683 25.347 1.00 33.18 O
ATOM 6 C5' A A 22 -12.816 7.401 25.598 1.00 29.21 C
ATOM 7 C4' A A 22 -13.415 6.521 24.526 1.00 28.74 C
ATOM 8 O4' A A 22 -13.299 7.166 23.230 1.00 29.36 O
ATOM 9 C3' A A 22 -12.755 5.169 24.306 1.00 25.92 C
ATOM 10 O3' A A 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 11 C2' A A 22 -13.223 4.816 22.903 1.00 31.00 C
ATOM 12 O2' A A 22 -14.577 4.392 22.918 1.00 33.59 O
ATOM 13 C1' A A 22 -13.158 6.182 22.223 1.00 28.74 C
ATOM 14 N9 A A 22 -11.871 6.387 21.532 1.00 28.30 N
ATOM 15 C8 A A 22 -10.820 7.198 21.880 1.00 28.39 C
ATOM 16 N7 A A 22 -9.813 7.138 21.039 1.00 27.28 N
ATOM 17 C5 A A 22 -10.227 6.224 20.077 1.00 27.06 C
ATOM 18 C6 A A 22 -9.619 5.719 18.911 1.00 25.94 C
ATOM 19 N6 A A 22 -8.404 6.079 18.493 1.00 25.54 N
ATOM 20 N1 A A 22 -10.308 4.818 18.174 1.00 24.17 N
ATOM 21 C2 A A 22 -11.527 4.455 18.589 1.00 23.60 C
ATOM 22 N3 A A 22 -12.203 4.858 19.665 1.00 26.30 N
ATOM 23 C4 A A 22 -11.492 5.753 20.373 1.00 26.39 C
ATOM 24 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 25 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 26 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 27 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
TER
ATOM 1 O3' G B 53 1.056 13.463 22.100 1.00 35.88 O
ATOM 2 P A B 54 0.234 14.676 21.444 1.00 40.45 P
ATOM 3 OP1 A B 54 1.232 15.644 20.921 1.00 45.22 O
ATOM 4 OP2 A B 54 -0.750 15.140 22.452 1.00 31.08 O
ATOM 5 O5' A B 54 -0.522 13.964 20.238 1.00 34.39 O
ATOM 6 C5' A B 54 0.106 12.923 19.500 1.00 30.53 C
ATOM 7 C4' A B 54 -0.748 12.463 18.349 1.00 35.75 C
ATOM 8 O4' A B 54 -1.643 11.409 18.802 1.00 35.18 O
ATOM 9 C3' A B 54 -1.638 13.540 17.720 1.00 37.74 C
ATOM 10 O3' A B 54 -1.701 13.335 16.313 1.00 40.20 O
ATOM 11 C2' A B 54 -3.001 13.248 18.341 1.00 37.11 C
ATOM 12 O2' A B 54 -4.106 13.704 17.587 1.00 35.76 O
ATOM 13 C1' A B 54 -2.965 11.730 18.427 1.00 37.02 C
ATOM 14 N9 A B 54 -3.885 11.168 19.417 1.00 35.16 N
ATOM 15 C8 A B 54 -4.074 11.595 20.704 1.00 33.58 C
ATOM 16 N7 A B 54 -4.985 10.914 21.349 1.00 34.19 N
ATOM 17 C5 A B 54 -5.434 9.986 20.420 1.00 31.04 C
ATOM 18 C6 A B 54 -6.403 8.971 20.493 1.00 29.46 C
ATOM 19 N6 A B 54 -7.118 8.720 21.592 1.00 29.61 N
ATOM 20 N1 A B 54 -6.612 8.217 19.390 1.00 26.38 N
ATOM 21 C2 A B 54 -5.888 8.476 18.292 1.00 28.28 C
ATOM 22 N3 A B 54 -4.949 9.402 18.102 1.00 29.09 N
ATOM 23 C4 A B 54 -4.769 10.133 19.218 1.00 30.99 C
ATOM 24 P A B 55 -0.711 14.136 15.340 1.00 43.95 P
ATOM 25 OP1 A B 55 0.272 13.154 14.811 1.00 34.97 O
ATOM 26 OP2 A B 55 -0.212 15.305 16.097 1.00 38.25 O
ATOM 27 O5' A B 55 -1.678 14.625 14.170 1.00 38.62 O
TER
Atoms:
OP1: (-11.699,10.080,26.084)
OP2: (-9.453,9.218,25.226)
C3': (-12.755,5.169,24.306)
C1': (-13.158,6.182,22.223)
C5': (-12.816,7.401,25.598)
O4': (-13.299,7.166,23.230)
C8: (-10.820,7.198,21.880)
O2': (-14.577,4.392,22.918)
C6: (-9.619,5.719,18.911)
C5: (-10.227,6.224,20.077)
C4: (-11.492,5.753,20.373)
P: (-10.937,9.184,25.182)
C4': (-13.415,6.521,24.526)
C2': (-13.223,4.816,22.903)
C2: (-11.527,4.455,18.589)
N1: (-10.308,4.818,18.174)
N3: (-12.203,4.858,19.665)
N6: (-8.404,6.079,18.493)
N7: (-9.813,7.138,21.039)
N9: (-11.871,6.387,21.532)
O5': (-11.448,7.683,25.347)
O3': (-13.111,4.204,25.279)
OP2: (-9.453,9.218,25.226)
C3': (-12.755,5.169,24.306)
C1': (-13.158,6.182,22.223)
C5': (-12.816,7.401,25.598)
O4': (-13.299,7.166,23.230)
C8: (-10.820,7.198,21.880)
O2': (-14.577,4.392,22.918)
C6: (-9.619,5.719,18.911)
C5: (-10.227,6.224,20.077)
C4: (-11.492,5.753,20.373)
P: (-10.937,9.184,25.182)
C4': (-13.415,6.521,24.526)
C2': (-13.223,4.816,22.903)
C2: (-11.527,4.455,18.589)
N1: (-10.308,4.818,18.174)
N3: (-12.203,4.858,19.665)
N6: (-8.404,6.079,18.493)
N7: (-9.813,7.138,21.039)
N9: (-11.871,6.387,21.532)
O5': (-11.448,7.683,25.347)
O3': (-13.111,4.204,25.279)
OP1: (1.232,15.644,20.921)
OP2: (-0.750,15.140,22.452)
C3': (-1.638,13.540,17.720)
C1': (-2.965,11.730,18.427)
C5': (0.106,12.923,19.500)
O4': (-1.643,11.409,18.802)
C8: (-4.074,11.595,20.704)
O2': (-4.106,13.704,17.587)
C6: (-6.403,8.971,20.493)
C5: (-5.434,9.986,20.420)
C4: (-4.769,10.133,19.218)
P: (0.234,14.676,21.444)
C4': (-0.748,12.463,18.349)
C2': (-3.001,13.248,18.341)
C2: (-5.888,8.476,18.292)
N1: (-6.612,8.217,19.390)
N3: (-4.949,9.402,18.102)
N6: (-7.118,8.720,21.592)
N7: (-4.985,10.914,21.349)
N9: (-3.885,11.168,19.417)
O5': (-0.522,13.964,20.238)
O3': (-1.701,13.335,16.313)
OP2: (-0.750,15.140,22.452)
C3': (-1.638,13.540,17.720)
C1': (-2.965,11.730,18.427)
C5': (0.106,12.923,19.500)
O4': (-1.643,11.409,18.802)
C8: (-4.074,11.595,20.704)
O2': (-4.106,13.704,17.587)
C6: (-6.403,8.971,20.493)
C5: (-5.434,9.986,20.420)
C4: (-4.769,10.133,19.218)
P: (0.234,14.676,21.444)
C4': (-0.748,12.463,18.349)
C2': (-3.001,13.248,18.341)
C2: (-5.888,8.476,18.292)
N1: (-6.612,8.217,19.390)
N3: (-4.949,9.402,18.102)
N6: (-7.118,8.720,21.592)
N7: (-4.985,10.914,21.349)
N9: (-3.885,11.168,19.417)
O5': (-0.522,13.964,20.238)
O3': (-1.701,13.335,16.313)
Image (generated by PyMOL):