Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01189:01190
Extra
PDB:
ATOM 1 O3' C A1188 55.664 103.363 137.736 1.00 42.01 O
ATOM 2 P A A1189 55.977 104.058 136.317 1.00 43.68 P
ATOM 3 OP1 A A1189 55.797 103.038 135.249 1.00 43.59 O
ATOM 4 OP2 A A1189 57.282 104.750 136.459 1.00 42.68 O
ATOM 5 O5' A A1189 54.850 105.172 136.144 1.00 41.48 O
ATOM 6 C5' A A1189 55.060 106.297 135.271 1.00 40.21 C
ATOM 7 C4' A A1189 53.742 106.809 134.739 1.00 40.57 C
ATOM 8 O4' A A1189 53.149 105.787 133.901 1.00 41.27 O
ATOM 9 C3' A A1189 52.682 107.171 135.774 1.00 40.40 C
ATOM 10 O3' A A1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 11 C2' A A1189 51.863 105.888 135.866 1.00 41.08 C
ATOM 12 O2' A A1189 50.541 106.088 136.319 1.00 40.00 O
ATOM 13 C1' A A1189 51.885 105.417 134.413 1.00 39.83 C
ATOM 14 N9 A A1189 51.764 103.974 134.239 1.00 38.82 N
ATOM 15 C8 A A1189 52.744 103.035 134.441 1.00 40.05 C
ATOM 16 N7 A A1189 52.383 101.818 134.122 1.00 41.46 N
ATOM 17 C5 A A1189 51.070 101.961 133.699 1.00 39.09 C
ATOM 18 C6 A A1189 50.140 101.042 133.199 1.00 38.14 C
ATOM 19 N6 A A1189 50.404 99.746 133.035 1.00 38.44 N
ATOM 20 N1 A A1189 48.917 101.506 132.861 1.00 37.24 N
ATOM 21 C2 A A1189 48.665 102.810 133.011 1.00 38.20 C
ATOM 22 N3 A A1189 49.464 103.778 133.461 1.00 39.41 N
ATOM 23 C4 A A1189 50.667 103.280 133.791 1.00 38.83 C
ATOM 24 P A A1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 25 OP1 A A1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 26 OP2 A A1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 27 O5' A A1190 53.635 109.948 134.678 1.00 40.74 O
TER
ATOM 1 O3' A B1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 2 P A B1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 3 OP1 A B1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 4 OP2 A B1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 5 O5' A B1190 53.635 109.948 134.678 1.00 40.74 O
ATOM 6 C5' A B1190 53.542 110.229 133.265 1.00 39.11 C
ATOM 7 C4' A B1190 54.547 111.288 132.885 1.00 38.10 C
ATOM 8 O4' A B1190 55.881 110.742 132.999 1.00 39.33 O
ATOM 9 C3' A B1190 54.526 111.757 131.445 1.00 37.73 C
ATOM 10 O3' A B1190 53.478 112.693 131.242 1.00 37.74 O
ATOM 11 C2' A B1190 55.896 112.414 131.314 1.00 38.19 C
ATOM 12 O2' A B1190 55.934 113.703 131.890 1.00 37.77 O
ATOM 13 C1' A B1190 56.757 111.489 132.177 1.00 39.22 C
ATOM 14 N9 A B1190 57.608 110.560 131.438 1.00 40.45 N
ATOM 15 C8 A B1190 57.329 109.869 130.286 1.00 41.72 C
ATOM 16 N7 A B1190 58.317 109.115 129.870 1.00 42.13 N
ATOM 17 C5 A B1190 59.313 109.323 130.812 1.00 42.80 C
ATOM 18 C6 A B1190 60.617 108.813 130.941 1.00 43.23 C
ATOM 19 N6 A B1190 61.164 107.946 130.088 1.00 42.14 N
ATOM 20 N1 A B1190 61.351 109.228 131.997 1.00 44.54 N
ATOM 21 C2 A B1190 60.802 110.089 132.860 1.00 43.26 C
ATOM 22 N3 A B1190 59.588 110.635 132.848 1.00 43.03 N
ATOM 23 C4 A B1190 58.887 110.208 131.785 1.00 42.02 C
ATOM 24 P A B1191 52.715 112.747 129.828 1.00 37.99 P
ATOM 25 OP1 A B1191 51.415 113.423 130.072 1.00 37.80 O
ATOM 26 OP2 A B1191 52.739 111.389 129.226 1.00 37.48 O
ATOM 27 O5' A B1191 53.617 113.702 128.934 1.00 34.70 O
TER
ATOM 2 P A A1189 55.977 104.058 136.317 1.00 43.68 P
ATOM 3 OP1 A A1189 55.797 103.038 135.249 1.00 43.59 O
ATOM 4 OP2 A A1189 57.282 104.750 136.459 1.00 42.68 O
ATOM 5 O5' A A1189 54.850 105.172 136.144 1.00 41.48 O
ATOM 6 C5' A A1189 55.060 106.297 135.271 1.00 40.21 C
ATOM 7 C4' A A1189 53.742 106.809 134.739 1.00 40.57 C
ATOM 8 O4' A A1189 53.149 105.787 133.901 1.00 41.27 O
ATOM 9 C3' A A1189 52.682 107.171 135.774 1.00 40.40 C
ATOM 10 O3' A A1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 11 C2' A A1189 51.863 105.888 135.866 1.00 41.08 C
ATOM 12 O2' A A1189 50.541 106.088 136.319 1.00 40.00 O
ATOM 13 C1' A A1189 51.885 105.417 134.413 1.00 39.83 C
ATOM 14 N9 A A1189 51.764 103.974 134.239 1.00 38.82 N
ATOM 15 C8 A A1189 52.744 103.035 134.441 1.00 40.05 C
ATOM 16 N7 A A1189 52.383 101.818 134.122 1.00 41.46 N
ATOM 17 C5 A A1189 51.070 101.961 133.699 1.00 39.09 C
ATOM 18 C6 A A1189 50.140 101.042 133.199 1.00 38.14 C
ATOM 19 N6 A A1189 50.404 99.746 133.035 1.00 38.44 N
ATOM 20 N1 A A1189 48.917 101.506 132.861 1.00 37.24 N
ATOM 21 C2 A A1189 48.665 102.810 133.011 1.00 38.20 C
ATOM 22 N3 A A1189 49.464 103.778 133.461 1.00 39.41 N
ATOM 23 C4 A A1189 50.667 103.280 133.791 1.00 38.83 C
ATOM 24 P A A1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 25 OP1 A A1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 26 OP2 A A1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 27 O5' A A1190 53.635 109.948 134.678 1.00 40.74 O
TER
ATOM 1 O3' A B1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 2 P A B1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 3 OP1 A B1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 4 OP2 A B1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 5 O5' A B1190 53.635 109.948 134.678 1.00 40.74 O
ATOM 6 C5' A B1190 53.542 110.229 133.265 1.00 39.11 C
ATOM 7 C4' A B1190 54.547 111.288 132.885 1.00 38.10 C
ATOM 8 O4' A B1190 55.881 110.742 132.999 1.00 39.33 O
ATOM 9 C3' A B1190 54.526 111.757 131.445 1.00 37.73 C
ATOM 10 O3' A B1190 53.478 112.693 131.242 1.00 37.74 O
ATOM 11 C2' A B1190 55.896 112.414 131.314 1.00 38.19 C
ATOM 12 O2' A B1190 55.934 113.703 131.890 1.00 37.77 O
ATOM 13 C1' A B1190 56.757 111.489 132.177 1.00 39.22 C
ATOM 14 N9 A B1190 57.608 110.560 131.438 1.00 40.45 N
ATOM 15 C8 A B1190 57.329 109.869 130.286 1.00 41.72 C
ATOM 16 N7 A B1190 58.317 109.115 129.870 1.00 42.13 N
ATOM 17 C5 A B1190 59.313 109.323 130.812 1.00 42.80 C
ATOM 18 C6 A B1190 60.617 108.813 130.941 1.00 43.23 C
ATOM 19 N6 A B1190 61.164 107.946 130.088 1.00 42.14 N
ATOM 20 N1 A B1190 61.351 109.228 131.997 1.00 44.54 N
ATOM 21 C2 A B1190 60.802 110.089 132.860 1.00 43.26 C
ATOM 22 N3 A B1190 59.588 110.635 132.848 1.00 43.03 N
ATOM 23 C4 A B1190 58.887 110.208 131.785 1.00 42.02 C
ATOM 24 P A B1191 52.715 112.747 129.828 1.00 37.99 P
ATOM 25 OP1 A B1191 51.415 113.423 130.072 1.00 37.80 O
ATOM 26 OP2 A B1191 52.739 111.389 129.226 1.00 37.48 O
ATOM 27 O5' A B1191 53.617 113.702 128.934 1.00 34.70 O
TER
Atoms:
OP1: (55.797,103.038,135.249)
OP2: (57.282,104.750,136.459)
C3': (52.682,107.171,135.774)
C1': (51.885,105.417,134.413)
C5': (55.060,106.297,135.271)
O4': (53.149,105.787,133.901)
C8: (52.744,103.035,134.441)
O2': (50.541,106.088,136.319)
C6: (50.140,101.042,133.199)
C5: (51.070,101.961,133.699)
C4: (50.667,103.280,133.791)
P: (55.977,104.058,136.317)
C4': (53.742,106.809,134.739)
C2': (51.863,105.888,135.866)
C2: (48.665,102.810,133.011)
N1: (48.917,101.506,132.861)
N3: (49.464,103.778,133.461)
N6: (50.404,99.746,133.035)
N7: (52.383,101.818,134.122)
N9: (51.764,103.974,134.239)
O5': (54.850,105.172,136.144)
O3': (51.887,108.245,135.278)
OP2: (57.282,104.750,136.459)
C3': (52.682,107.171,135.774)
C1': (51.885,105.417,134.413)
C5': (55.060,106.297,135.271)
O4': (53.149,105.787,133.901)
C8: (52.744,103.035,134.441)
O2': (50.541,106.088,136.319)
C6: (50.140,101.042,133.199)
C5: (51.070,101.961,133.699)
C4: (50.667,103.280,133.791)
P: (55.977,104.058,136.317)
C4': (53.742,106.809,134.739)
C2': (51.863,105.888,135.866)
C2: (48.665,102.810,133.011)
N1: (48.917,101.506,132.861)
N3: (49.464,103.778,133.461)
N6: (50.404,99.746,133.035)
N7: (52.383,101.818,134.122)
N9: (51.764,103.974,134.239)
O5': (54.850,105.172,136.144)
O3': (51.887,108.245,135.278)
OP1: (52.768,109.877,136.984)
OP2: (51.252,110.648,135.076)
C3': (54.526,111.757,131.445)
C1': (56.757,111.489,132.177)
C5': (53.542,110.229,133.265)
O4': (55.881,110.742,132.999)
C8: (57.329,109.869,130.286)
O2': (55.934,113.703,131.890)
C6: (60.617,108.813,130.941)
C5: (59.313,109.323,130.812)
C4: (58.887,110.208,131.785)
P: (52.330,109.760,135.576)
C4': (54.547,111.288,132.885)
C2': (55.896,112.414,131.314)
C2: (60.802,110.089,132.860)
N1: (61.351,109.228,131.997)
N3: (59.588,110.635,132.848)
N6: (61.164,107.946,130.088)
N7: (58.317,109.115,129.870)
N9: (57.608,110.560,131.438)
O5': (53.635,109.948,134.678)
O3': (53.478,112.693,131.242)
OP2: (51.252,110.648,135.076)
C3': (54.526,111.757,131.445)
C1': (56.757,111.489,132.177)
C5': (53.542,110.229,133.265)
O4': (55.881,110.742,132.999)
C8: (57.329,109.869,130.286)
O2': (55.934,113.703,131.890)
C6: (60.617,108.813,130.941)
C5: (59.313,109.323,130.812)
C4: (58.887,110.208,131.785)
P: (52.330,109.760,135.576)
C4': (54.547,111.288,132.885)
C2': (55.896,112.414,131.314)
C2: (60.802,110.089,132.860)
N1: (61.351,109.228,131.997)
N3: (59.588,110.635,132.848)
N6: (61.164,107.946,130.088)
N7: (58.317,109.115,129.870)
N9: (57.608,110.560,131.438)
O5': (53.635,109.948,134.678)
O3': (53.478,112.693,131.242)
Image (generated by PyMOL):