Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A67:A42
Extra
PDB:
ATOM 1 O3' C A 66 2.497 0.825 -4.186 1.00 31.48 O
ATOM 2 P A A 67 3.285 2.200 -3.949 1.00 33.40 P
ATOM 3 OP1 A A 67 4.596 2.126 -4.631 1.00 29.15 O
ATOM 4 OP2 A A 67 3.223 2.503 -2.501 1.00 34.85 O
ATOM 5 O5' A A 67 2.379 3.251 -4.740 1.00 28.11 O
ATOM 6 C5' A A 67 1.082 3.592 -4.268 1.00 27.96 C
ATOM 7 C4' A A 67 1.120 4.877 -3.460 1.00 26.23 C
ATOM 8 O4' A A 67 1.598 5.960 -4.297 1.00 26.14 O
ATOM 9 C3' A A 67 -0.238 5.339 -2.958 1.00 25.64 C
ATOM 10 O3' A A 67 -0.507 4.767 -1.686 1.00 27.34 O
ATOM 11 C2' A A 67 -0.049 6.846 -2.843 1.00 27.37 C
ATOM 12 O2' A A 67 0.613 7.198 -1.647 1.00 26.24 O
ATOM 13 C1' A A 67 0.856 7.139 -4.033 1.00 25.82 C
ATOM 14 N9 A A 67 0.141 7.525 -5.245 1.00 24.00 N
ATOM 15 C8 A A 67 -0.087 6.748 -6.346 1.00 23.18 C
ATOM 16 N7 A A 67 -0.753 7.363 -7.295 1.00 23.50 N
ATOM 17 C5 A A 67 -0.971 8.630 -6.785 1.00 24.34 C
ATOM 18 C6 A A 67 -1.623 9.763 -7.309 1.00 22.42 C
ATOM 19 N6 A A 67 -2.195 9.788 -8.518 1.00 20.31 N
ATOM 20 N1 A A 67 -1.666 10.872 -6.538 1.00 24.84 N
ATOM 21 C2 A A 67 -1.090 10.841 -5.329 1.00 24.15 C
ATOM 22 N3 A A 67 -0.451 9.836 -4.733 1.00 26.31 N
ATOM 23 C4 A A 67 -0.426 8.749 -5.521 1.00 25.33 C
ATOM 24 P G A 68 -1.994 4.277 -1.362 1.00 29.88 P
ATOM 25 OP1 G A 68 -1.990 3.679 -0.008 1.00 32.98 O
ATOM 26 OP2 G A 68 -2.494 3.511 -2.520 1.00 26.99 O
ATOM 27 O5' G A 68 -2.828 5.632 -1.304 1.00 27.34 O
TER
ATOM 1 O3' G B 41 -9.655 2.484 -14.501 1.00 25.89 O
ATOM 2 P A B 42 -8.305 3.183 -14.026 1.00 29.98 P
ATOM 3 OP1 A B 42 -7.243 2.164 -13.865 1.00 29.28 O
ATOM 4 OP2 A B 42 -8.602 4.126 -12.923 1.00 27.11 O
ATOM 5 O5' A B 42 -8.018 4.023 -15.334 1.00 31.18 O
ATOM 6 C5' A B 42 -6.726 4.050 -15.818 1.00 36.86 C
ATOM 7 C4' A B 42 -6.383 5.484 -16.114 1.00 30.68 C
ATOM 8 O4' A B 42 -5.914 6.121 -14.898 1.00 24.70 O
ATOM 9 C3' A B 42 -5.275 5.566 -17.141 1.00 31.41 C
ATOM 10 O3' A B 42 -5.569 6.617 -18.040 1.00 27.12 O
ATOM 11 C2' A B 42 -4.012 5.765 -16.309 1.00 29.03 C
ATOM 12 O2' A B 42 -3.089 6.622 -16.957 1.00 35.25 O
ATOM 13 C1' A B 42 -4.531 6.388 -15.011 1.00 28.94 C
ATOM 14 N9 A B 42 -3.831 5.891 -13.829 1.00 27.26 N
ATOM 15 C8 A B 42 -3.381 4.622 -13.574 1.00 26.91 C
ATOM 16 N7 A B 42 -2.773 4.505 -12.414 1.00 27.88 N
ATOM 17 C5 A B 42 -2.828 5.784 -11.878 1.00 23.99 C
ATOM 18 C6 A B 42 -2.367 6.344 -10.669 1.00 25.00 C
ATOM 19 N6 A B 42 -1.723 5.656 -9.721 1.00 20.52 N
ATOM 20 N1 A B 42 -2.595 7.658 -10.463 1.00 21.59 N
ATOM 21 C2 A B 42 -3.241 8.360 -11.395 1.00 22.10 C
ATOM 22 N3 A B 42 -3.722 7.951 -12.565 1.00 20.11 N
ATOM 23 C4 A B 42 -3.476 6.645 -12.741 1.00 25.73 C
ATOM 24 P A B 43 -6.541 6.303 -19.273 1.00 29.02 P
ATOM 25 OP1 A B 43 -6.590 4.836 -19.471 1.00 32.05 O
ATOM 26 OP2 A B 43 -6.128 7.188 -20.382 1.00 27.01 O
ATOM 27 O5' A B 43 -7.977 6.766 -18.756 1.00 27.88 O
TER
ATOM 2 P A A 67 3.285 2.200 -3.949 1.00 33.40 P
ATOM 3 OP1 A A 67 4.596 2.126 -4.631 1.00 29.15 O
ATOM 4 OP2 A A 67 3.223 2.503 -2.501 1.00 34.85 O
ATOM 5 O5' A A 67 2.379 3.251 -4.740 1.00 28.11 O
ATOM 6 C5' A A 67 1.082 3.592 -4.268 1.00 27.96 C
ATOM 7 C4' A A 67 1.120 4.877 -3.460 1.00 26.23 C
ATOM 8 O4' A A 67 1.598 5.960 -4.297 1.00 26.14 O
ATOM 9 C3' A A 67 -0.238 5.339 -2.958 1.00 25.64 C
ATOM 10 O3' A A 67 -0.507 4.767 -1.686 1.00 27.34 O
ATOM 11 C2' A A 67 -0.049 6.846 -2.843 1.00 27.37 C
ATOM 12 O2' A A 67 0.613 7.198 -1.647 1.00 26.24 O
ATOM 13 C1' A A 67 0.856 7.139 -4.033 1.00 25.82 C
ATOM 14 N9 A A 67 0.141 7.525 -5.245 1.00 24.00 N
ATOM 15 C8 A A 67 -0.087 6.748 -6.346 1.00 23.18 C
ATOM 16 N7 A A 67 -0.753 7.363 -7.295 1.00 23.50 N
ATOM 17 C5 A A 67 -0.971 8.630 -6.785 1.00 24.34 C
ATOM 18 C6 A A 67 -1.623 9.763 -7.309 1.00 22.42 C
ATOM 19 N6 A A 67 -2.195 9.788 -8.518 1.00 20.31 N
ATOM 20 N1 A A 67 -1.666 10.872 -6.538 1.00 24.84 N
ATOM 21 C2 A A 67 -1.090 10.841 -5.329 1.00 24.15 C
ATOM 22 N3 A A 67 -0.451 9.836 -4.733 1.00 26.31 N
ATOM 23 C4 A A 67 -0.426 8.749 -5.521 1.00 25.33 C
ATOM 24 P G A 68 -1.994 4.277 -1.362 1.00 29.88 P
ATOM 25 OP1 G A 68 -1.990 3.679 -0.008 1.00 32.98 O
ATOM 26 OP2 G A 68 -2.494 3.511 -2.520 1.00 26.99 O
ATOM 27 O5' G A 68 -2.828 5.632 -1.304 1.00 27.34 O
TER
ATOM 1 O3' G B 41 -9.655 2.484 -14.501 1.00 25.89 O
ATOM 2 P A B 42 -8.305 3.183 -14.026 1.00 29.98 P
ATOM 3 OP1 A B 42 -7.243 2.164 -13.865 1.00 29.28 O
ATOM 4 OP2 A B 42 -8.602 4.126 -12.923 1.00 27.11 O
ATOM 5 O5' A B 42 -8.018 4.023 -15.334 1.00 31.18 O
ATOM 6 C5' A B 42 -6.726 4.050 -15.818 1.00 36.86 C
ATOM 7 C4' A B 42 -6.383 5.484 -16.114 1.00 30.68 C
ATOM 8 O4' A B 42 -5.914 6.121 -14.898 1.00 24.70 O
ATOM 9 C3' A B 42 -5.275 5.566 -17.141 1.00 31.41 C
ATOM 10 O3' A B 42 -5.569 6.617 -18.040 1.00 27.12 O
ATOM 11 C2' A B 42 -4.012 5.765 -16.309 1.00 29.03 C
ATOM 12 O2' A B 42 -3.089 6.622 -16.957 1.00 35.25 O
ATOM 13 C1' A B 42 -4.531 6.388 -15.011 1.00 28.94 C
ATOM 14 N9 A B 42 -3.831 5.891 -13.829 1.00 27.26 N
ATOM 15 C8 A B 42 -3.381 4.622 -13.574 1.00 26.91 C
ATOM 16 N7 A B 42 -2.773 4.505 -12.414 1.00 27.88 N
ATOM 17 C5 A B 42 -2.828 5.784 -11.878 1.00 23.99 C
ATOM 18 C6 A B 42 -2.367 6.344 -10.669 1.00 25.00 C
ATOM 19 N6 A B 42 -1.723 5.656 -9.721 1.00 20.52 N
ATOM 20 N1 A B 42 -2.595 7.658 -10.463 1.00 21.59 N
ATOM 21 C2 A B 42 -3.241 8.360 -11.395 1.00 22.10 C
ATOM 22 N3 A B 42 -3.722 7.951 -12.565 1.00 20.11 N
ATOM 23 C4 A B 42 -3.476 6.645 -12.741 1.00 25.73 C
ATOM 24 P A B 43 -6.541 6.303 -19.273 1.00 29.02 P
ATOM 25 OP1 A B 43 -6.590 4.836 -19.471 1.00 32.05 O
ATOM 26 OP2 A B 43 -6.128 7.188 -20.382 1.00 27.01 O
ATOM 27 O5' A B 43 -7.977 6.766 -18.756 1.00 27.88 O
TER
Atoms:
OP1: (4.596,2.126,-4.631)
OP2: (3.223,2.503,-2.501)
C3': (-0.238,5.339,-2.958)
C1': (0.856,7.139,-4.033)
C5': (1.082,3.592,-4.268)
O4': (1.598,5.960,-4.297)
C8: (-0.087,6.748,-6.346)
O2': (0.613,7.198,-1.647)
C6: (-1.623,9.763,-7.309)
C5: (-0.971,8.630,-6.785)
C4: (-0.426,8.749,-5.521)
P: (3.285,2.200,-3.949)
C4': (1.120,4.877,-3.460)
C2': (-0.049,6.846,-2.843)
C2: (-1.090,10.841,-5.329)
N1: (-1.666,10.872,-6.538)
N3: (-0.451,9.836,-4.733)
N6: (-2.195,9.788,-8.518)
N7: (-0.753,7.363,-7.295)
N9: (0.141,7.525,-5.245)
O5': (2.379,3.251,-4.740)
O3': (-0.507,4.767,-1.686)
OP2: (3.223,2.503,-2.501)
C3': (-0.238,5.339,-2.958)
C1': (0.856,7.139,-4.033)
C5': (1.082,3.592,-4.268)
O4': (1.598,5.960,-4.297)
C8: (-0.087,6.748,-6.346)
O2': (0.613,7.198,-1.647)
C6: (-1.623,9.763,-7.309)
C5: (-0.971,8.630,-6.785)
C4: (-0.426,8.749,-5.521)
P: (3.285,2.200,-3.949)
C4': (1.120,4.877,-3.460)
C2': (-0.049,6.846,-2.843)
C2: (-1.090,10.841,-5.329)
N1: (-1.666,10.872,-6.538)
N3: (-0.451,9.836,-4.733)
N6: (-2.195,9.788,-8.518)
N7: (-0.753,7.363,-7.295)
N9: (0.141,7.525,-5.245)
O5': (2.379,3.251,-4.740)
O3': (-0.507,4.767,-1.686)
OP1: (-7.243,2.164,-13.865)
OP2: (-8.602,4.126,-12.923)
C3': (-5.275,5.566,-17.141)
C1': (-4.531,6.388,-15.011)
C5': (-6.726,4.050,-15.818)
O4': (-5.914,6.121,-14.898)
C8: (-3.381,4.622,-13.574)
O2': (-3.089,6.622,-16.957)
C6: (-2.367,6.344,-10.669)
C5: (-2.828,5.784,-11.878)
C4: (-3.476,6.645,-12.741)
P: (-8.305,3.183,-14.026)
C4': (-6.383,5.484,-16.114)
C2': (-4.012,5.765,-16.309)
C2: (-3.241,8.360,-11.395)
N1: (-2.595,7.658,-10.463)
N3: (-3.722,7.951,-12.565)
N6: (-1.723,5.656,-9.721)
N7: (-2.773,4.505,-12.414)
N9: (-3.831,5.891,-13.829)
O5': (-8.018,4.023,-15.334)
O3': (-5.569,6.617,-18.040)
OP2: (-8.602,4.126,-12.923)
C3': (-5.275,5.566,-17.141)
C1': (-4.531,6.388,-15.011)
C5': (-6.726,4.050,-15.818)
O4': (-5.914,6.121,-14.898)
C8: (-3.381,4.622,-13.574)
O2': (-3.089,6.622,-16.957)
C6: (-2.367,6.344,-10.669)
C5: (-2.828,5.784,-11.878)
C4: (-3.476,6.645,-12.741)
P: (-8.305,3.183,-14.026)
C4': (-6.383,5.484,-16.114)
C2': (-4.012,5.765,-16.309)
C2: (-3.241,8.360,-11.395)
N1: (-2.595,7.658,-10.463)
N3: (-3.722,7.951,-12.565)
N6: (-1.723,5.656,-9.721)
N7: (-2.773,4.505,-12.414)
N9: (-3.831,5.891,-13.829)
O5': (-8.018,4.023,-15.334)
O3': (-5.569,6.617,-18.040)
Image (generated by PyMOL):