Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:B9:B10
Extra
PDB:
ATOM 1 O3' C A 8 51.889 42.490 98.960 1.00 51.11 O
ATOM 2 P C A 9 53.230 43.417 98.891 1.00 50.40 P
ATOM 3 OP1 C A 9 52.820 44.686 99.510 1.00 52.24 O
ATOM 4 OP2 C A 9 53.863 43.443 97.541 1.00 49.02 O
ATOM 5 O5' C A 9 54.255 42.750 99.914 1.00 51.02 O
ATOM 6 C5' C A 9 53.895 42.625 101.312 1.00 53.15 C
ATOM 7 C4' C A 9 54.893 41.761 102.068 1.00 55.15 C
ATOM 8 O4' C A 9 55.073 40.499 101.360 1.00 54.95 O
ATOM 9 C3' C A 9 56.298 42.332 102.288 1.00 54.79 C
ATOM 10 O3' C A 9 56.796 41.818 103.504 1.00 55.20 O
ATOM 11 C2' C A 9 57.079 41.723 101.123 1.00 54.54 C
ATOM 12 O2' C A 9 58.491 41.598 101.313 1.00 54.91 O
ATOM 13 C1' C A 9 56.451 40.329 101.064 1.00 54.57 C
ATOM 14 N1 C A 9 56.571 39.667 99.759 1.00 52.73 N
ATOM 15 C2 C A 9 57.302 38.481 99.663 1.00 53.40 C
ATOM 16 O2 C A 9 57.803 37.991 100.690 1.00 54.52 O
ATOM 17 N3 C A 9 57.430 37.884 98.464 1.00 52.59 N
ATOM 18 C4 C A 9 56.837 38.406 97.395 1.00 50.90 C
ATOM 19 N4 C A 9 56.980 37.771 96.235 1.00 51.72 N
ATOM 20 C5 C A 9 56.070 39.601 97.467 1.00 50.95 C
ATOM 21 C6 C A 9 55.973 40.198 98.654 1.00 51.60 C
ATOM 22 P A A 10 57.098 42.786 104.759 1.00 57.84 P
ATOM 23 OP1 A A 10 55.886 43.590 105.078 1.00 57.81 O
ATOM 24 OP2 A A 10 58.391 43.461 104.503 1.00 56.85 O
ATOM 25 O5' A A 10 57.314 41.757 105.968 1.00 56.98 O
TER
ATOM 1 O3' C B 9 56.796 41.818 103.504 1.00 55.20 O
ATOM 2 P A B 10 57.098 42.786 104.759 1.00 57.84 P
ATOM 3 OP1 A B 10 55.886 43.590 105.078 1.00 57.81 O
ATOM 4 OP2 A B 10 58.391 43.461 104.503 1.00 56.85 O
ATOM 5 O5' A B 10 57.314 41.757 105.968 1.00 56.98 O
ATOM 6 C5' A B 10 56.698 40.445 105.956 1.00 54.20 C
ATOM 7 C4' A B 10 56.614 39.914 107.370 1.00 53.84 C
ATOM 8 O4' A B 10 57.938 39.738 107.929 1.00 53.61 O
ATOM 9 C3' A B 10 55.905 40.828 108.347 1.00 54.78 C
ATOM 10 O3' A B 10 54.500 40.673 108.290 1.00 56.31 O
ATOM 11 C2' A B 10 56.507 40.423 109.679 1.00 55.69 C
ATOM 12 O2' A B 10 55.983 39.236 110.244 1.00 58.06 O
ATOM 13 C1' A B 10 57.957 40.180 109.273 1.00 55.80 C
ATOM 14 N9 A B 10 58.787 41.391 109.352 1.00 56.26 N
ATOM 15 C8 A B 10 59.330 42.116 108.319 1.00 55.87 C
ATOM 16 N7 A B 10 60.036 43.149 108.707 1.00 55.45 N
ATOM 17 C5 A B 10 59.951 43.108 110.088 1.00 55.81 C
ATOM 18 C6 A B 10 60.484 43.919 111.088 1.00 56.71 C
ATOM 19 N6 A B 10 61.261 44.976 110.851 1.00 56.16 N
ATOM 20 N1 A B 10 60.198 43.599 112.368 1.00 58.14 N
ATOM 21 C2 A B 10 59.438 42.524 112.610 1.00 57.98 C
ATOM 22 N3 A B 10 58.889 41.685 111.762 1.00 56.54 N
ATOM 23 C4 A B 10 59.184 42.033 110.500 1.00 56.20 C
ATOM 24 P C B 11 53.548 41.914 108.647 1.00 57.63 P
ATOM 25 OP1 C B 11 52.763 42.223 107.426 1.00 57.30 O
ATOM 26 OP2 C B 11 54.345 42.982 109.297 1.00 56.81 O
ATOM 27 O5' C B 11 52.549 41.301 109.724 1.00 60.26 O
TER
ATOM 2 P C A 9 53.230 43.417 98.891 1.00 50.40 P
ATOM 3 OP1 C A 9 52.820 44.686 99.510 1.00 52.24 O
ATOM 4 OP2 C A 9 53.863 43.443 97.541 1.00 49.02 O
ATOM 5 O5' C A 9 54.255 42.750 99.914 1.00 51.02 O
ATOM 6 C5' C A 9 53.895 42.625 101.312 1.00 53.15 C
ATOM 7 C4' C A 9 54.893 41.761 102.068 1.00 55.15 C
ATOM 8 O4' C A 9 55.073 40.499 101.360 1.00 54.95 O
ATOM 9 C3' C A 9 56.298 42.332 102.288 1.00 54.79 C
ATOM 10 O3' C A 9 56.796 41.818 103.504 1.00 55.20 O
ATOM 11 C2' C A 9 57.079 41.723 101.123 1.00 54.54 C
ATOM 12 O2' C A 9 58.491 41.598 101.313 1.00 54.91 O
ATOM 13 C1' C A 9 56.451 40.329 101.064 1.00 54.57 C
ATOM 14 N1 C A 9 56.571 39.667 99.759 1.00 52.73 N
ATOM 15 C2 C A 9 57.302 38.481 99.663 1.00 53.40 C
ATOM 16 O2 C A 9 57.803 37.991 100.690 1.00 54.52 O
ATOM 17 N3 C A 9 57.430 37.884 98.464 1.00 52.59 N
ATOM 18 C4 C A 9 56.837 38.406 97.395 1.00 50.90 C
ATOM 19 N4 C A 9 56.980 37.771 96.235 1.00 51.72 N
ATOM 20 C5 C A 9 56.070 39.601 97.467 1.00 50.95 C
ATOM 21 C6 C A 9 55.973 40.198 98.654 1.00 51.60 C
ATOM 22 P A A 10 57.098 42.786 104.759 1.00 57.84 P
ATOM 23 OP1 A A 10 55.886 43.590 105.078 1.00 57.81 O
ATOM 24 OP2 A A 10 58.391 43.461 104.503 1.00 56.85 O
ATOM 25 O5' A A 10 57.314 41.757 105.968 1.00 56.98 O
TER
ATOM 1 O3' C B 9 56.796 41.818 103.504 1.00 55.20 O
ATOM 2 P A B 10 57.098 42.786 104.759 1.00 57.84 P
ATOM 3 OP1 A B 10 55.886 43.590 105.078 1.00 57.81 O
ATOM 4 OP2 A B 10 58.391 43.461 104.503 1.00 56.85 O
ATOM 5 O5' A B 10 57.314 41.757 105.968 1.00 56.98 O
ATOM 6 C5' A B 10 56.698 40.445 105.956 1.00 54.20 C
ATOM 7 C4' A B 10 56.614 39.914 107.370 1.00 53.84 C
ATOM 8 O4' A B 10 57.938 39.738 107.929 1.00 53.61 O
ATOM 9 C3' A B 10 55.905 40.828 108.347 1.00 54.78 C
ATOM 10 O3' A B 10 54.500 40.673 108.290 1.00 56.31 O
ATOM 11 C2' A B 10 56.507 40.423 109.679 1.00 55.69 C
ATOM 12 O2' A B 10 55.983 39.236 110.244 1.00 58.06 O
ATOM 13 C1' A B 10 57.957 40.180 109.273 1.00 55.80 C
ATOM 14 N9 A B 10 58.787 41.391 109.352 1.00 56.26 N
ATOM 15 C8 A B 10 59.330 42.116 108.319 1.00 55.87 C
ATOM 16 N7 A B 10 60.036 43.149 108.707 1.00 55.45 N
ATOM 17 C5 A B 10 59.951 43.108 110.088 1.00 55.81 C
ATOM 18 C6 A B 10 60.484 43.919 111.088 1.00 56.71 C
ATOM 19 N6 A B 10 61.261 44.976 110.851 1.00 56.16 N
ATOM 20 N1 A B 10 60.198 43.599 112.368 1.00 58.14 N
ATOM 21 C2 A B 10 59.438 42.524 112.610 1.00 57.98 C
ATOM 22 N3 A B 10 58.889 41.685 111.762 1.00 56.54 N
ATOM 23 C4 A B 10 59.184 42.033 110.500 1.00 56.20 C
ATOM 24 P C B 11 53.548 41.914 108.647 1.00 57.63 P
ATOM 25 OP1 C B 11 52.763 42.223 107.426 1.00 57.30 O
ATOM 26 OP2 C B 11 54.345 42.982 109.297 1.00 56.81 O
ATOM 27 O5' C B 11 52.549 41.301 109.724 1.00 60.26 O
TER
Atoms:
C2: (57.302,38.481,99.663)
OP1: (52.820,44.686,99.510)
OP2: (53.863,43.443,97.541)
C4: (56.837,38.406,97.395)
O5': (54.255,42.750,99.914)
C3': (56.298,42.332,102.288)
C1': (56.451,40.329,101.064)
O4': (55.073,40.499,101.360)
C5': (53.895,42.625,101.312)
P: (53.230,43.417,98.891)
O2: (57.803,37.991,100.690)
C4': (54.893,41.761,102.068)
C2': (57.079,41.723,101.123)
O2': (58.491,41.598,101.313)
N1: (56.571,39.667,99.759)
N3: (57.430,37.884,98.464)
N4: (56.980,37.771,96.235)
C6: (55.973,40.198,98.654)
C5: (56.070,39.601,97.467)
O3': (56.796,41.818,103.504)
OP1: (52.820,44.686,99.510)
OP2: (53.863,43.443,97.541)
C4: (56.837,38.406,97.395)
O5': (54.255,42.750,99.914)
C3': (56.298,42.332,102.288)
C1': (56.451,40.329,101.064)
O4': (55.073,40.499,101.360)
C5': (53.895,42.625,101.312)
P: (53.230,43.417,98.891)
O2: (57.803,37.991,100.690)
C4': (54.893,41.761,102.068)
C2': (57.079,41.723,101.123)
O2': (58.491,41.598,101.313)
N1: (56.571,39.667,99.759)
N3: (57.430,37.884,98.464)
N4: (56.980,37.771,96.235)
C6: (55.973,40.198,98.654)
C5: (56.070,39.601,97.467)
O3': (56.796,41.818,103.504)
OP1: (55.886,43.590,105.078)
OP2: (58.391,43.461,104.503)
C3': (55.905,40.828,108.347)
C1': (57.957,40.180,109.273)
C5': (56.698,40.445,105.956)
O4': (57.938,39.738,107.929)
C8: (59.330,42.116,108.319)
O2': (55.983,39.236,110.244)
C6: (60.484,43.919,111.088)
C5: (59.951,43.108,110.088)
C4: (59.184,42.033,110.500)
P: (57.098,42.786,104.759)
C4': (56.614,39.914,107.370)
C2': (56.507,40.423,109.679)
C2: (59.438,42.524,112.610)
N1: (60.198,43.599,112.368)
N3: (58.889,41.685,111.762)
N6: (61.261,44.976,110.851)
N7: (60.036,43.149,108.707)
N9: (58.787,41.391,109.352)
O5': (57.314,41.757,105.968)
O3': (54.500,40.673,108.290)
OP2: (58.391,43.461,104.503)
C3': (55.905,40.828,108.347)
C1': (57.957,40.180,109.273)
C5': (56.698,40.445,105.956)
O4': (57.938,39.738,107.929)
C8: (59.330,42.116,108.319)
O2': (55.983,39.236,110.244)
C6: (60.484,43.919,111.088)
C5: (59.951,43.108,110.088)
C4: (59.184,42.033,110.500)
P: (57.098,42.786,104.759)
C4': (56.614,39.914,107.370)
C2': (56.507,40.423,109.679)
C2: (59.438,42.524,112.610)
N1: (60.198,43.599,112.368)
N3: (58.889,41.685,111.762)
N6: (61.261,44.976,110.851)
N7: (60.036,43.149,108.707)
N9: (58.787,41.391,109.352)
O5': (57.314,41.757,105.968)
O3': (54.500,40.673,108.290)
Image (generated by PyMOL):