Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:99:910
Extra
PDB:
ATOM 1 O3' C A 8 52.007 42.626 98.876 1.00 50.89 O
ATOM 2 P C A 9 53.368 43.478 98.970 1.00 53.02 P
ATOM 3 OP1 C A 9 52.994 44.754 99.616 1.00 54.61 O
ATOM 4 OP2 C A 9 54.024 43.493 97.641 1.00 53.14 O
ATOM 5 O5' C A 9 54.325 42.680 99.964 1.00 50.78 O
ATOM 6 C5' C A 9 53.980 42.505 101.343 1.00 50.85 C
ATOM 7 C4' C A 9 54.987 41.609 102.033 1.00 51.80 C
ATOM 8 O4' C A 9 55.055 40.336 101.329 1.00 51.06 O
ATOM 9 C3' C A 9 56.423 42.125 102.127 1.00 51.38 C
ATOM 10 O3' C A 9 57.013 41.657 103.334 1.00 52.37 O
ATOM 11 C2' C A 9 57.106 41.424 100.961 1.00 51.50 C
ATOM 12 O2' C A 9 58.485 41.228 101.198 1.00 52.80 O
ATOM 13 C1' C A 9 56.388 40.075 100.949 1.00 51.37 C
ATOM 14 N1 C A 9 56.383 39.455 99.616 1.00 51.39 N
ATOM 15 C2 C A 9 57.128 38.285 99.400 1.00 51.54 C
ATOM 16 O2 C A 9 57.714 37.749 100.356 1.00 51.93 O
ATOM 17 N3 C A 9 57.180 37.764 98.156 1.00 50.29 N
ATOM 18 C4 C A 9 56.514 38.347 97.159 1.00 50.05 C
ATOM 19 N4 C A 9 56.613 37.814 95.945 1.00 51.22 N
ATOM 20 C5 C A 9 55.719 39.507 97.360 1.00 50.90 C
ATOM 21 C6 C A 9 55.681 40.023 98.590 1.00 51.30 C
ATOM 22 P A A 10 56.994 42.580 104.643 1.00 52.46 P
ATOM 23 OP1 A A 10 55.629 43.129 104.820 1.00 53.18 O
ATOM 24 OP2 A A 10 58.147 43.502 104.564 1.00 54.22 O
ATOM 25 O5' A A 10 57.263 41.553 105.827 1.00 53.22 O
TER
ATOM 1 O3' C B 9 57.013 41.657 103.334 1.00 52.37 O
ATOM 2 P A B 10 56.994 42.580 104.643 1.00 52.46 P
ATOM 3 OP1 A B 10 55.629 43.129 104.820 1.00 53.18 O
ATOM 4 OP2 A B 10 58.147 43.502 104.564 1.00 54.22 O
ATOM 5 O5' A B 10 57.263 41.553 105.827 1.00 53.22 O
ATOM 6 C5' A B 10 56.540 40.311 105.908 1.00 53.14 C
ATOM 7 C4' A B 10 56.488 39.835 107.336 1.00 52.85 C
ATOM 8 O4' A B 10 57.840 39.693 107.835 1.00 51.89 O
ATOM 9 C3' A B 10 55.831 40.799 108.304 1.00 54.01 C
ATOM 10 O3' A B 10 54.421 40.622 108.307 1.00 57.29 O
ATOM 11 C2' A B 10 56.466 40.403 109.626 1.00 54.00 C
ATOM 12 O2' A B 10 55.919 39.207 110.129 1.00 56.82 O
ATOM 13 C1' A B 10 57.903 40.109 109.189 1.00 53.96 C
ATOM 14 N9 A B 10 58.791 41.276 109.278 1.00 53.85 N
ATOM 15 C8 A B 10 59.341 41.995 108.245 1.00 53.84 C
ATOM 16 N7 A B 10 60.055 43.020 108.634 1.00 52.69 N
ATOM 17 C5 A B 10 59.982 42.970 110.015 1.00 52.40 C
ATOM 18 C6 A B 10 60.515 43.794 111.013 1.00 53.57 C
ATOM 19 N6 A B 10 61.257 44.874 110.760 1.00 53.03 N
ATOM 20 N1 A B 10 60.257 43.470 112.299 1.00 53.44 N
ATOM 21 C2 A B 10 59.514 42.390 112.549 1.00 53.09 C
ATOM 22 N3 A B 10 58.953 41.540 111.696 1.00 53.27 N
ATOM 23 C4 A B 10 59.224 41.892 110.429 1.00 52.90 C
ATOM 24 P C B 11 53.465 41.839 108.727 1.00 59.29 P
ATOM 25 OP1 C B 11 52.601 42.203 107.576 1.00 58.75 O
ATOM 26 OP2 C B 11 54.319 42.871 109.370 1.00 58.91 O
ATOM 27 O5' C B 11 52.506 41.209 109.826 1.00 60.66 O
TER
ATOM 2 P C A 9 53.368 43.478 98.970 1.00 53.02 P
ATOM 3 OP1 C A 9 52.994 44.754 99.616 1.00 54.61 O
ATOM 4 OP2 C A 9 54.024 43.493 97.641 1.00 53.14 O
ATOM 5 O5' C A 9 54.325 42.680 99.964 1.00 50.78 O
ATOM 6 C5' C A 9 53.980 42.505 101.343 1.00 50.85 C
ATOM 7 C4' C A 9 54.987 41.609 102.033 1.00 51.80 C
ATOM 8 O4' C A 9 55.055 40.336 101.329 1.00 51.06 O
ATOM 9 C3' C A 9 56.423 42.125 102.127 1.00 51.38 C
ATOM 10 O3' C A 9 57.013 41.657 103.334 1.00 52.37 O
ATOM 11 C2' C A 9 57.106 41.424 100.961 1.00 51.50 C
ATOM 12 O2' C A 9 58.485 41.228 101.198 1.00 52.80 O
ATOM 13 C1' C A 9 56.388 40.075 100.949 1.00 51.37 C
ATOM 14 N1 C A 9 56.383 39.455 99.616 1.00 51.39 N
ATOM 15 C2 C A 9 57.128 38.285 99.400 1.00 51.54 C
ATOM 16 O2 C A 9 57.714 37.749 100.356 1.00 51.93 O
ATOM 17 N3 C A 9 57.180 37.764 98.156 1.00 50.29 N
ATOM 18 C4 C A 9 56.514 38.347 97.159 1.00 50.05 C
ATOM 19 N4 C A 9 56.613 37.814 95.945 1.00 51.22 N
ATOM 20 C5 C A 9 55.719 39.507 97.360 1.00 50.90 C
ATOM 21 C6 C A 9 55.681 40.023 98.590 1.00 51.30 C
ATOM 22 P A A 10 56.994 42.580 104.643 1.00 52.46 P
ATOM 23 OP1 A A 10 55.629 43.129 104.820 1.00 53.18 O
ATOM 24 OP2 A A 10 58.147 43.502 104.564 1.00 54.22 O
ATOM 25 O5' A A 10 57.263 41.553 105.827 1.00 53.22 O
TER
ATOM 1 O3' C B 9 57.013 41.657 103.334 1.00 52.37 O
ATOM 2 P A B 10 56.994 42.580 104.643 1.00 52.46 P
ATOM 3 OP1 A B 10 55.629 43.129 104.820 1.00 53.18 O
ATOM 4 OP2 A B 10 58.147 43.502 104.564 1.00 54.22 O
ATOM 5 O5' A B 10 57.263 41.553 105.827 1.00 53.22 O
ATOM 6 C5' A B 10 56.540 40.311 105.908 1.00 53.14 C
ATOM 7 C4' A B 10 56.488 39.835 107.336 1.00 52.85 C
ATOM 8 O4' A B 10 57.840 39.693 107.835 1.00 51.89 O
ATOM 9 C3' A B 10 55.831 40.799 108.304 1.00 54.01 C
ATOM 10 O3' A B 10 54.421 40.622 108.307 1.00 57.29 O
ATOM 11 C2' A B 10 56.466 40.403 109.626 1.00 54.00 C
ATOM 12 O2' A B 10 55.919 39.207 110.129 1.00 56.82 O
ATOM 13 C1' A B 10 57.903 40.109 109.189 1.00 53.96 C
ATOM 14 N9 A B 10 58.791 41.276 109.278 1.00 53.85 N
ATOM 15 C8 A B 10 59.341 41.995 108.245 1.00 53.84 C
ATOM 16 N7 A B 10 60.055 43.020 108.634 1.00 52.69 N
ATOM 17 C5 A B 10 59.982 42.970 110.015 1.00 52.40 C
ATOM 18 C6 A B 10 60.515 43.794 111.013 1.00 53.57 C
ATOM 19 N6 A B 10 61.257 44.874 110.760 1.00 53.03 N
ATOM 20 N1 A B 10 60.257 43.470 112.299 1.00 53.44 N
ATOM 21 C2 A B 10 59.514 42.390 112.549 1.00 53.09 C
ATOM 22 N3 A B 10 58.953 41.540 111.696 1.00 53.27 N
ATOM 23 C4 A B 10 59.224 41.892 110.429 1.00 52.90 C
ATOM 24 P C B 11 53.465 41.839 108.727 1.00 59.29 P
ATOM 25 OP1 C B 11 52.601 42.203 107.576 1.00 58.75 O
ATOM 26 OP2 C B 11 54.319 42.871 109.370 1.00 58.91 O
ATOM 27 O5' C B 11 52.506 41.209 109.826 1.00 60.66 O
TER
Atoms:
C2: (57.128,38.285,99.400)
OP1: (52.994,44.754,99.616)
OP2: (54.024,43.493,97.641)
C4: (56.514,38.347,97.159)
O5': (54.325,42.680,99.964)
C3': (56.423,42.125,102.127)
C1': (56.388,40.075,100.949)
O4': (55.055,40.336,101.329)
C5': (53.980,42.505,101.343)
P: (53.368,43.478,98.970)
O2: (57.714,37.749,100.356)
C4': (54.987,41.609,102.033)
C2': (57.106,41.424,100.961)
O2': (58.485,41.228,101.198)
N1: (56.383,39.455,99.616)
N3: (57.180,37.764,98.156)
N4: (56.613,37.814,95.945)
C6: (55.681,40.023,98.590)
C5: (55.719,39.507,97.360)
O3': (57.013,41.657,103.334)
OP1: (52.994,44.754,99.616)
OP2: (54.024,43.493,97.641)
C4: (56.514,38.347,97.159)
O5': (54.325,42.680,99.964)
C3': (56.423,42.125,102.127)
C1': (56.388,40.075,100.949)
O4': (55.055,40.336,101.329)
C5': (53.980,42.505,101.343)
P: (53.368,43.478,98.970)
O2: (57.714,37.749,100.356)
C4': (54.987,41.609,102.033)
C2': (57.106,41.424,100.961)
O2': (58.485,41.228,101.198)
N1: (56.383,39.455,99.616)
N3: (57.180,37.764,98.156)
N4: (56.613,37.814,95.945)
C6: (55.681,40.023,98.590)
C5: (55.719,39.507,97.360)
O3': (57.013,41.657,103.334)
OP1: (55.629,43.129,104.820)
OP2: (58.147,43.502,104.564)
C3': (55.831,40.799,108.304)
C1': (57.903,40.109,109.189)
C5': (56.540,40.311,105.908)
O4': (57.840,39.693,107.835)
C8: (59.341,41.995,108.245)
O2': (55.919,39.207,110.129)
C6: (60.515,43.794,111.013)
C5: (59.982,42.970,110.015)
C4: (59.224,41.892,110.429)
P: (56.994,42.580,104.643)
C4': (56.488,39.835,107.336)
C2': (56.466,40.403,109.626)
C2: (59.514,42.390,112.549)
N1: (60.257,43.470,112.299)
N3: (58.953,41.540,111.696)
N6: (61.257,44.874,110.760)
N7: (60.055,43.020,108.634)
N9: (58.791,41.276,109.278)
O5': (57.263,41.553,105.827)
O3': (54.421,40.622,108.307)
OP2: (58.147,43.502,104.564)
C3': (55.831,40.799,108.304)
C1': (57.903,40.109,109.189)
C5': (56.540,40.311,105.908)
O4': (57.840,39.693,107.835)
C8: (59.341,41.995,108.245)
O2': (55.919,39.207,110.129)
C6: (60.515,43.794,111.013)
C5: (59.982,42.970,110.015)
C4: (59.224,41.892,110.429)
P: (56.994,42.580,104.643)
C4': (56.488,39.835,107.336)
C2': (56.466,40.403,109.626)
C2: (59.514,42.390,112.549)
N1: (60.257,43.470,112.299)
N3: (58.953,41.540,111.696)
N6: (61.257,44.874,110.760)
N7: (60.055,43.020,108.634)
N9: (58.791,41.276,109.278)
O5': (57.263,41.553,105.827)
O3': (54.421,40.622,108.307)
Image (generated by PyMOL):