Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:99:910
Extra
PDB:
ATOM 1 O3' C A 8 51.757 42.325 98.361 1.00 50.30 O
ATOM 2 P C A 9 53.096 43.217 98.428 1.00 51.57 P
ATOM 3 OP1 C A 9 52.720 44.501 99.064 1.00 52.79 O
ATOM 4 OP2 C A 9 53.737 43.223 97.091 1.00 52.26 O
ATOM 5 O5' C A 9 54.072 42.445 99.423 1.00 51.72 O
ATOM 6 C5' C A 9 53.720 42.239 100.803 1.00 51.48 C
ATOM 7 C4' C A 9 54.754 41.372 101.495 1.00 51.14 C
ATOM 8 O4' C A 9 54.886 40.113 100.775 1.00 51.12 O
ATOM 9 C3' C A 9 56.168 41.934 101.624 1.00 49.64 C
ATOM 10 O3' C A 9 56.747 41.439 102.818 1.00 50.21 O
ATOM 11 C2' C A 9 56.892 41.286 100.456 1.00 49.47 C
ATOM 12 O2' C A 9 58.274 41.162 100.705 1.00 49.24 O
ATOM 13 C1' C A 9 56.238 39.907 100.428 1.00 50.08 C
ATOM 14 N1 C A 9 56.289 39.258 99.110 1.00 50.11 N
ATOM 15 C2 C A 9 57.098 38.123 98.941 1.00 51.03 C
ATOM 16 O2 C A 9 57.709 37.660 99.920 1.00 51.89 O
ATOM 17 N3 C A 9 57.187 37.557 97.719 1.00 51.03 N
ATOM 18 C4 C A 9 56.495 38.066 96.697 1.00 51.30 C
ATOM 19 N4 C A 9 56.624 37.484 95.503 1.00 53.01 N
ATOM 20 C5 C A 9 55.643 39.198 96.850 1.00 51.19 C
ATOM 21 C6 C A 9 55.571 39.756 98.059 1.00 49.67 C
ATOM 22 P A A 10 56.917 42.404 104.081 1.00 51.84 P
ATOM 23 OP1 A A 10 55.642 43.122 104.319 1.00 51.63 O
ATOM 24 OP2 A A 10 58.161 43.171 103.861 1.00 51.68 O
ATOM 25 O5' A A 10 57.149 41.400 105.295 1.00 53.06 O
TER
ATOM 1 O3' C B 9 56.747 41.439 102.818 1.00 50.21 O
ATOM 2 P A B 10 56.917 42.404 104.081 1.00 51.84 P
ATOM 3 OP1 A B 10 55.642 43.122 104.319 1.00 51.63 O
ATOM 4 OP2 A B 10 58.161 43.171 103.861 1.00 51.68 O
ATOM 5 O5' A B 10 57.149 41.400 105.295 1.00 53.06 O
ATOM 6 C5' A B 10 56.442 40.148 105.373 1.00 53.65 C
ATOM 7 C4' A B 10 56.352 39.691 106.806 1.00 55.08 C
ATOM 8 O4' A B 10 57.686 39.525 107.352 1.00 55.65 O
ATOM 9 C3' A B 10 55.686 40.677 107.742 1.00 55.98 C
ATOM 10 O3' A B 10 54.275 40.537 107.693 1.00 58.40 O
ATOM 11 C2' A B 10 56.277 40.297 109.091 1.00 56.45 C
ATOM 12 O2' A B 10 55.687 39.142 109.638 1.00 59.17 O
ATOM 13 C1' A B 10 57.716 39.964 108.700 1.00 56.34 C
ATOM 14 N9 A B 10 58.600 41.130 108.780 1.00 57.37 N
ATOM 15 C8 A B 10 59.118 41.856 107.738 1.00 57.42 C
ATOM 16 N7 A B 10 59.845 42.876 108.114 1.00 57.62 N
ATOM 17 C5 A B 10 59.813 42.816 109.498 1.00 57.90 C
ATOM 18 C6 A B 10 60.383 43.627 110.487 1.00 58.76 C
ATOM 19 N6 A B 10 61.125 44.704 110.221 1.00 58.72 N
ATOM 20 N1 A B 10 60.163 43.293 111.777 1.00 59.38 N
ATOM 21 C2 A B 10 59.422 42.215 112.040 1.00 58.74 C
ATOM 22 N3 A B 10 58.829 41.375 111.196 1.00 59.23 N
ATOM 23 C4 A B 10 59.063 41.737 109.923 1.00 58.11 C
ATOM 24 P C B 11 53.338 41.697 108.284 1.00 61.41 P
ATOM 25 OP1 C B 11 52.421 42.191 107.216 1.00 61.34 O
ATOM 26 OP2 C B 11 54.207 42.655 109.011 1.00 59.63 O
ATOM 27 O5' C B 11 52.424 40.942 109.341 1.00 62.92 O
TER
ATOM 2 P C A 9 53.096 43.217 98.428 1.00 51.57 P
ATOM 3 OP1 C A 9 52.720 44.501 99.064 1.00 52.79 O
ATOM 4 OP2 C A 9 53.737 43.223 97.091 1.00 52.26 O
ATOM 5 O5' C A 9 54.072 42.445 99.423 1.00 51.72 O
ATOM 6 C5' C A 9 53.720 42.239 100.803 1.00 51.48 C
ATOM 7 C4' C A 9 54.754 41.372 101.495 1.00 51.14 C
ATOM 8 O4' C A 9 54.886 40.113 100.775 1.00 51.12 O
ATOM 9 C3' C A 9 56.168 41.934 101.624 1.00 49.64 C
ATOM 10 O3' C A 9 56.747 41.439 102.818 1.00 50.21 O
ATOM 11 C2' C A 9 56.892 41.286 100.456 1.00 49.47 C
ATOM 12 O2' C A 9 58.274 41.162 100.705 1.00 49.24 O
ATOM 13 C1' C A 9 56.238 39.907 100.428 1.00 50.08 C
ATOM 14 N1 C A 9 56.289 39.258 99.110 1.00 50.11 N
ATOM 15 C2 C A 9 57.098 38.123 98.941 1.00 51.03 C
ATOM 16 O2 C A 9 57.709 37.660 99.920 1.00 51.89 O
ATOM 17 N3 C A 9 57.187 37.557 97.719 1.00 51.03 N
ATOM 18 C4 C A 9 56.495 38.066 96.697 1.00 51.30 C
ATOM 19 N4 C A 9 56.624 37.484 95.503 1.00 53.01 N
ATOM 20 C5 C A 9 55.643 39.198 96.850 1.00 51.19 C
ATOM 21 C6 C A 9 55.571 39.756 98.059 1.00 49.67 C
ATOM 22 P A A 10 56.917 42.404 104.081 1.00 51.84 P
ATOM 23 OP1 A A 10 55.642 43.122 104.319 1.00 51.63 O
ATOM 24 OP2 A A 10 58.161 43.171 103.861 1.00 51.68 O
ATOM 25 O5' A A 10 57.149 41.400 105.295 1.00 53.06 O
TER
ATOM 1 O3' C B 9 56.747 41.439 102.818 1.00 50.21 O
ATOM 2 P A B 10 56.917 42.404 104.081 1.00 51.84 P
ATOM 3 OP1 A B 10 55.642 43.122 104.319 1.00 51.63 O
ATOM 4 OP2 A B 10 58.161 43.171 103.861 1.00 51.68 O
ATOM 5 O5' A B 10 57.149 41.400 105.295 1.00 53.06 O
ATOM 6 C5' A B 10 56.442 40.148 105.373 1.00 53.65 C
ATOM 7 C4' A B 10 56.352 39.691 106.806 1.00 55.08 C
ATOM 8 O4' A B 10 57.686 39.525 107.352 1.00 55.65 O
ATOM 9 C3' A B 10 55.686 40.677 107.742 1.00 55.98 C
ATOM 10 O3' A B 10 54.275 40.537 107.693 1.00 58.40 O
ATOM 11 C2' A B 10 56.277 40.297 109.091 1.00 56.45 C
ATOM 12 O2' A B 10 55.687 39.142 109.638 1.00 59.17 O
ATOM 13 C1' A B 10 57.716 39.964 108.700 1.00 56.34 C
ATOM 14 N9 A B 10 58.600 41.130 108.780 1.00 57.37 N
ATOM 15 C8 A B 10 59.118 41.856 107.738 1.00 57.42 C
ATOM 16 N7 A B 10 59.845 42.876 108.114 1.00 57.62 N
ATOM 17 C5 A B 10 59.813 42.816 109.498 1.00 57.90 C
ATOM 18 C6 A B 10 60.383 43.627 110.487 1.00 58.76 C
ATOM 19 N6 A B 10 61.125 44.704 110.221 1.00 58.72 N
ATOM 20 N1 A B 10 60.163 43.293 111.777 1.00 59.38 N
ATOM 21 C2 A B 10 59.422 42.215 112.040 1.00 58.74 C
ATOM 22 N3 A B 10 58.829 41.375 111.196 1.00 59.23 N
ATOM 23 C4 A B 10 59.063 41.737 109.923 1.00 58.11 C
ATOM 24 P C B 11 53.338 41.697 108.284 1.00 61.41 P
ATOM 25 OP1 C B 11 52.421 42.191 107.216 1.00 61.34 O
ATOM 26 OP2 C B 11 54.207 42.655 109.011 1.00 59.63 O
ATOM 27 O5' C B 11 52.424 40.942 109.341 1.00 62.92 O
TER
Atoms:
C2: (57.098,38.123,98.941)
OP1: (52.720,44.501,99.064)
OP2: (53.737,43.223,97.091)
C4: (56.495,38.066,96.697)
O5': (54.072,42.445,99.423)
C3': (56.168,41.934,101.624)
C1': (56.238,39.907,100.428)
O4': (54.886,40.113,100.775)
C5': (53.720,42.239,100.803)
P: (53.096,43.217,98.428)
O2: (57.709,37.660,99.920)
C4': (54.754,41.372,101.495)
C2': (56.892,41.286,100.456)
O2': (58.274,41.162,100.705)
N1: (56.289,39.258,99.110)
N3: (57.187,37.557,97.719)
N4: (56.624,37.484,95.503)
C6: (55.571,39.756,98.059)
C5: (55.643,39.198,96.850)
O3': (56.747,41.439,102.818)
OP1: (52.720,44.501,99.064)
OP2: (53.737,43.223,97.091)
C4: (56.495,38.066,96.697)
O5': (54.072,42.445,99.423)
C3': (56.168,41.934,101.624)
C1': (56.238,39.907,100.428)
O4': (54.886,40.113,100.775)
C5': (53.720,42.239,100.803)
P: (53.096,43.217,98.428)
O2: (57.709,37.660,99.920)
C4': (54.754,41.372,101.495)
C2': (56.892,41.286,100.456)
O2': (58.274,41.162,100.705)
N1: (56.289,39.258,99.110)
N3: (57.187,37.557,97.719)
N4: (56.624,37.484,95.503)
C6: (55.571,39.756,98.059)
C5: (55.643,39.198,96.850)
O3': (56.747,41.439,102.818)
OP1: (55.642,43.122,104.319)
OP2: (58.161,43.171,103.861)
C3': (55.686,40.677,107.742)
C1': (57.716,39.964,108.700)
C5': (56.442,40.148,105.373)
O4': (57.686,39.525,107.352)
C8: (59.118,41.856,107.738)
O2': (55.687,39.142,109.638)
C6: (60.383,43.627,110.487)
C5: (59.813,42.816,109.498)
C4: (59.063,41.737,109.923)
P: (56.917,42.404,104.081)
C4': (56.352,39.691,106.806)
C2': (56.277,40.297,109.091)
C2: (59.422,42.215,112.040)
N1: (60.163,43.293,111.777)
N3: (58.829,41.375,111.196)
N6: (61.125,44.704,110.221)
N7: (59.845,42.876,108.114)
N9: (58.600,41.130,108.780)
O5': (57.149,41.400,105.295)
O3': (54.275,40.537,107.693)
OP2: (58.161,43.171,103.861)
C3': (55.686,40.677,107.742)
C1': (57.716,39.964,108.700)
C5': (56.442,40.148,105.373)
O4': (57.686,39.525,107.352)
C8: (59.118,41.856,107.738)
O2': (55.687,39.142,109.638)
C6: (60.383,43.627,110.487)
C5: (59.813,42.816,109.498)
C4: (59.063,41.737,109.923)
P: (56.917,42.404,104.081)
C4': (56.352,39.691,106.806)
C2': (56.277,40.297,109.091)
C2: (59.422,42.215,112.040)
N1: (60.163,43.293,111.777)
N3: (58.829,41.375,111.196)
N6: (61.125,44.704,110.221)
N7: (59.845,42.876,108.114)
N9: (58.600,41.130,108.780)
O5': (57.149,41.400,105.295)
O3': (54.275,40.537,107.693)
Image (generated by PyMOL):