Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:140:141
Extra
PDB:
ATOM 1 O3' C A 39 32.573 -25.382 87.581 1.00 40.21 O
ATOM 2 P A A 40 33.348 -25.547 88.982 1.00 41.54 P
ATOM 3 OP1 A A 40 33.149 -24.295 89.771 1.00 41.54 O
ATOM 4 OP2 A A 40 34.719 -25.996 88.686 1.00 41.52 O
ATOM 5 O5' A A 40 32.558 -26.725 89.640 1.00 41.76 O
ATOM 6 C5' A A 40 31.974 -26.569 90.889 1.00 41.94 C
ATOM 7 C4' A A 40 31.176 -27.756 91.237 1.00 42.13 C
ATOM 8 O4' A A 40 30.411 -28.153 90.088 1.00 42.03 O
ATOM 9 C3' A A 40 31.980 -28.987 91.631 1.00 42.31 C
ATOM 10 O3' A A 40 31.574 -29.430 92.911 1.00 42.56 O
ATOM 11 C2' A A 40 31.623 -30.024 90.561 1.00 42.28 C
ATOM 12 O2' A A 40 31.602 -31.363 91.010 1.00 42.51 O
ATOM 13 C1' A A 40 30.259 -29.530 90.156 1.00 42.20 C
ATOM 14 N9 A A 40 29.760 -30.020 88.887 1.00 42.10 N
ATOM 15 C8 A A 40 30.377 -30.558 87.786 1.00 42.01 C
ATOM 16 N7 A A 40 29.524 -30.930 86.851 1.00 41.97 N
ATOM 17 C5 A A 40 28.284 -30.598 87.399 1.00 42.04 C
ATOM 18 C6 A A 40 27.008 -30.703 86.898 1.00 42.05 C
ATOM 19 N6 A A 40 26.766 -31.208 85.712 1.00 41.99 N
ATOM 20 N1 A A 40 26.004 -30.272 87.688 1.00 42.14 N
ATOM 21 C2 A A 40 26.266 -29.756 88.909 1.00 42.22 C
ATOM 22 N3 A A 40 27.462 -29.557 89.486 1.00 42.22 N
ATOM 23 C4 A A 40 28.416 -30.035 88.655 1.00 42.12 C
ATOM 24 P U A 41 32.680 -29.436 94.053 1.00 38.45 P
ATOM 25 OP1 U A 41 32.027 -29.097 95.336 1.00 38.64 O
ATOM 26 OP2 U A 41 33.802 -28.566 93.556 1.00 38.25 O
ATOM 27 O5' U A 41 33.152 -30.936 94.055 1.00 38.63 O
TER
ATOM 1 O3' A B 40 31.574 -29.430 92.911 1.00 42.56 O
ATOM 2 P U B 41 32.680 -29.436 94.053 1.00 38.45 P
ATOM 3 OP1 U B 41 32.027 -29.097 95.336 1.00 38.64 O
ATOM 4 OP2 U B 41 33.802 -28.566 93.556 1.00 38.25 O
ATOM 5 O5' U B 41 33.152 -30.936 94.055 1.00 38.63 O
ATOM 6 C5' U B 41 32.314 -31.939 94.565 1.00 38.86 C
ATOM 7 C4' U B 41 32.908 -33.293 94.344 1.00 38.99 C
ATOM 8 O4' U B 41 32.796 -33.670 92.961 1.00 38.83 O
ATOM 9 C3' U B 41 34.385 -33.435 94.613 1.00 39.04 C
ATOM 10 O3' U B 41 34.683 -33.432 95.983 1.00 39.28 O
ATOM 11 C2' U B 41 34.660 -34.749 93.932 1.00 39.12 C
ATOM 12 O2' U B 41 34.141 -35.823 94.688 1.00 39.42 O
ATOM 13 C1' U B 41 33.803 -34.597 92.666 1.00 38.90 C
ATOM 14 N1 U B 41 34.598 -34.069 91.589 1.00 38.65 N
ATOM 15 C2 U B 41 35.512 -34.994 91.153 1.00 38.72 C
ATOM 16 O2 U B 41 35.515 -36.153 91.576 1.00 38.96 O
ATOM 17 N3 U B 41 36.380 -34.535 90.216 1.00 38.51 N
ATOM 18 C4 U B 41 36.362 -33.281 89.737 1.00 38.26 C
ATOM 19 O4 U B 41 37.167 -33.046 88.897 1.00 38.11 O
ATOM 20 C5 U B 41 35.418 -32.374 90.258 1.00 38.21 C
ATOM 21 C6 U B 41 34.559 -32.774 91.189 1.00 38.40 C
ATOM 22 P A B 42 36.069 -32.795 96.539 1.00 36.73 P
ATOM 23 OP1 A B 42 36.364 -33.490 97.828 1.00 37.07 O
ATOM 24 OP2 A B 42 35.930 -31.316 96.521 1.00 36.53 O
ATOM 25 O5' A B 42 37.138 -33.229 95.463 1.00 36.60 O
TER
ATOM 2 P A A 40 33.348 -25.547 88.982 1.00 41.54 P
ATOM 3 OP1 A A 40 33.149 -24.295 89.771 1.00 41.54 O
ATOM 4 OP2 A A 40 34.719 -25.996 88.686 1.00 41.52 O
ATOM 5 O5' A A 40 32.558 -26.725 89.640 1.00 41.76 O
ATOM 6 C5' A A 40 31.974 -26.569 90.889 1.00 41.94 C
ATOM 7 C4' A A 40 31.176 -27.756 91.237 1.00 42.13 C
ATOM 8 O4' A A 40 30.411 -28.153 90.088 1.00 42.03 O
ATOM 9 C3' A A 40 31.980 -28.987 91.631 1.00 42.31 C
ATOM 10 O3' A A 40 31.574 -29.430 92.911 1.00 42.56 O
ATOM 11 C2' A A 40 31.623 -30.024 90.561 1.00 42.28 C
ATOM 12 O2' A A 40 31.602 -31.363 91.010 1.00 42.51 O
ATOM 13 C1' A A 40 30.259 -29.530 90.156 1.00 42.20 C
ATOM 14 N9 A A 40 29.760 -30.020 88.887 1.00 42.10 N
ATOM 15 C8 A A 40 30.377 -30.558 87.786 1.00 42.01 C
ATOM 16 N7 A A 40 29.524 -30.930 86.851 1.00 41.97 N
ATOM 17 C5 A A 40 28.284 -30.598 87.399 1.00 42.04 C
ATOM 18 C6 A A 40 27.008 -30.703 86.898 1.00 42.05 C
ATOM 19 N6 A A 40 26.766 -31.208 85.712 1.00 41.99 N
ATOM 20 N1 A A 40 26.004 -30.272 87.688 1.00 42.14 N
ATOM 21 C2 A A 40 26.266 -29.756 88.909 1.00 42.22 C
ATOM 22 N3 A A 40 27.462 -29.557 89.486 1.00 42.22 N
ATOM 23 C4 A A 40 28.416 -30.035 88.655 1.00 42.12 C
ATOM 24 P U A 41 32.680 -29.436 94.053 1.00 38.45 P
ATOM 25 OP1 U A 41 32.027 -29.097 95.336 1.00 38.64 O
ATOM 26 OP2 U A 41 33.802 -28.566 93.556 1.00 38.25 O
ATOM 27 O5' U A 41 33.152 -30.936 94.055 1.00 38.63 O
TER
ATOM 1 O3' A B 40 31.574 -29.430 92.911 1.00 42.56 O
ATOM 2 P U B 41 32.680 -29.436 94.053 1.00 38.45 P
ATOM 3 OP1 U B 41 32.027 -29.097 95.336 1.00 38.64 O
ATOM 4 OP2 U B 41 33.802 -28.566 93.556 1.00 38.25 O
ATOM 5 O5' U B 41 33.152 -30.936 94.055 1.00 38.63 O
ATOM 6 C5' U B 41 32.314 -31.939 94.565 1.00 38.86 C
ATOM 7 C4' U B 41 32.908 -33.293 94.344 1.00 38.99 C
ATOM 8 O4' U B 41 32.796 -33.670 92.961 1.00 38.83 O
ATOM 9 C3' U B 41 34.385 -33.435 94.613 1.00 39.04 C
ATOM 10 O3' U B 41 34.683 -33.432 95.983 1.00 39.28 O
ATOM 11 C2' U B 41 34.660 -34.749 93.932 1.00 39.12 C
ATOM 12 O2' U B 41 34.141 -35.823 94.688 1.00 39.42 O
ATOM 13 C1' U B 41 33.803 -34.597 92.666 1.00 38.90 C
ATOM 14 N1 U B 41 34.598 -34.069 91.589 1.00 38.65 N
ATOM 15 C2 U B 41 35.512 -34.994 91.153 1.00 38.72 C
ATOM 16 O2 U B 41 35.515 -36.153 91.576 1.00 38.96 O
ATOM 17 N3 U B 41 36.380 -34.535 90.216 1.00 38.51 N
ATOM 18 C4 U B 41 36.362 -33.281 89.737 1.00 38.26 C
ATOM 19 O4 U B 41 37.167 -33.046 88.897 1.00 38.11 O
ATOM 20 C5 U B 41 35.418 -32.374 90.258 1.00 38.21 C
ATOM 21 C6 U B 41 34.559 -32.774 91.189 1.00 38.40 C
ATOM 22 P A B 42 36.069 -32.795 96.539 1.00 36.73 P
ATOM 23 OP1 A B 42 36.364 -33.490 97.828 1.00 37.07 O
ATOM 24 OP2 A B 42 35.930 -31.316 96.521 1.00 36.53 O
ATOM 25 O5' A B 42 37.138 -33.229 95.463 1.00 36.60 O
TER
Atoms:
OP1: (33.149,-24.295,89.771)
OP2: (34.719,-25.996,88.686)
C3': (31.980,-28.987,91.631)
C1': (30.259,-29.530,90.156)
C5': (31.974,-26.569,90.889)
O4': (30.411,-28.153,90.088)
C8: (30.377,-30.558,87.786)
O2': (31.602,-31.363,91.010)
C6: (27.008,-30.703,86.898)
C5: (28.284,-30.598,87.399)
C4: (28.416,-30.035,88.655)
P: (33.348,-25.547,88.982)
C4': (31.176,-27.756,91.237)
C2': (31.623,-30.024,90.561)
C2: (26.266,-29.756,88.909)
N1: (26.004,-30.272,87.688)
N3: (27.462,-29.557,89.486)
N6: (26.766,-31.208,85.712)
N7: (29.524,-30.930,86.851)
N9: (29.760,-30.020,88.887)
O5': (32.558,-26.725,89.640)
O3': (31.574,-29.430,92.911)
OP2: (34.719,-25.996,88.686)
C3': (31.980,-28.987,91.631)
C1': (30.259,-29.530,90.156)
C5': (31.974,-26.569,90.889)
O4': (30.411,-28.153,90.088)
C8: (30.377,-30.558,87.786)
O2': (31.602,-31.363,91.010)
C6: (27.008,-30.703,86.898)
C5: (28.284,-30.598,87.399)
C4: (28.416,-30.035,88.655)
P: (33.348,-25.547,88.982)
C4': (31.176,-27.756,91.237)
C2': (31.623,-30.024,90.561)
C2: (26.266,-29.756,88.909)
N1: (26.004,-30.272,87.688)
N3: (27.462,-29.557,89.486)
N6: (26.766,-31.208,85.712)
N7: (29.524,-30.930,86.851)
N9: (29.760,-30.020,88.887)
O5': (32.558,-26.725,89.640)
O3': (31.574,-29.430,92.911)
C4: (36.362,-33.281,89.737)
N3: (36.380,-34.535,90.216)
OP1: (32.027,-29.097,95.336)
OP2: (33.802,-28.566,93.556)
C2: (35.512,-34.994,91.153)
C1': (33.803,-34.597,92.666)
C3': (34.385,-33.435,94.613)
O5': (33.152,-30.936,94.055)
O4': (32.796,-33.670,92.961)
C5': (32.314,-31.939,94.565)
P: (32.680,-29.436,94.053)
C4': (32.908,-33.293,94.344)
C2': (34.660,-34.749,93.932)
O2': (34.141,-35.823,94.688)
N1: (34.598,-34.069,91.589)
O4: (37.167,-33.046,88.897)
O2: (35.515,-36.153,91.576)
C6: (34.559,-32.774,91.189)
C5: (35.418,-32.374,90.258)
O3': (34.683,-33.432,95.983)
N3: (36.380,-34.535,90.216)
OP1: (32.027,-29.097,95.336)
OP2: (33.802,-28.566,93.556)
C2: (35.512,-34.994,91.153)
C1': (33.803,-34.597,92.666)
C3': (34.385,-33.435,94.613)
O5': (33.152,-30.936,94.055)
O4': (32.796,-33.670,92.961)
C5': (32.314,-31.939,94.565)
P: (32.680,-29.436,94.053)
C4': (32.908,-33.293,94.344)
C2': (34.660,-34.749,93.932)
O2': (34.141,-35.823,94.688)
N1: (34.598,-34.069,91.589)
O4: (37.167,-33.046,88.897)
O2: (35.515,-36.153,91.576)
C6: (34.559,-32.774,91.189)
C5: (35.418,-32.374,90.258)
O3': (34.683,-33.432,95.983)
Image (generated by PyMOL):