Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01877:01878
Extra
PDB:
ATOM 1 O3' U A1876 93.912 74.864 34.230 1.00 78.70 O
ATOM 2 P A A1877 94.012 74.206 32.761 1.00 80.17 P
ATOM 3 OP1 A A1877 92.622 74.042 32.263 1.00 79.22 O
ATOM 4 OP2 A A1877 94.909 73.022 32.838 1.00 80.57 O
ATOM 5 O5' A A1877 94.745 75.316 31.879 1.00 82.20 O
ATOM 6 C5' A A1877 94.915 75.140 30.462 1.00 84.33 C
ATOM 7 C4' A A1877 96.343 75.432 30.057 1.00 86.10 C
ATOM 8 O4' A A1877 96.529 75.000 28.685 1.00 88.31 O
ATOM 9 C3' A A1877 96.781 76.891 30.098 1.00 86.90 C
ATOM 10 O3' A A1877 98.193 76.947 30.331 1.00 85.41 O
ATOM 11 C2' A A1877 96.483 77.348 28.672 1.00 88.66 C
ATOM 12 O2' A A1877 97.254 78.474 28.301 1.00 88.54 O
ATOM 13 C1' A A1877 96.882 76.103 27.876 1.00 90.93 C
ATOM 14 N9 A A1877 96.244 75.923 26.566 1.00 96.03 N
ATOM 15 C8 A A1877 95.493 74.844 26.149 1.00 96.84 C
ATOM 16 N7 A A1877 95.062 74.941 24.914 1.00 98.34 N
ATOM 17 C5 A A1877 95.554 76.166 24.483 1.00100.13 C
ATOM 18 C6 A A1877 95.438 76.857 23.257 1.00101.64 C
ATOM 19 N6 A A1877 94.763 76.389 22.201 1.00102.16 N
ATOM 20 N1 A A1877 96.047 78.062 23.154 1.00102.61 N
ATOM 21 C2 A A1877 96.721 78.535 24.214 1.00102.25 C
ATOM 22 N3 A A1877 96.899 77.982 25.418 1.00101.50 N
ATOM 23 C4 A A1877 96.283 76.785 25.490 1.00 99.43 C
ATOM 24 P C A1878 98.772 77.685 31.639 1.00 84.29 P
ATOM 25 OP1 C A1878 100.249 77.742 31.496 1.00 83.32 O
ATOM 26 OP2 C A1878 98.182 77.024 32.827 1.00 85.13 O
ATOM 27 O5' C A1878 98.205 79.174 31.547 1.00 82.58 O
TER
ATOM 1 O3' A B1877 98.193 76.947 30.331 1.00 85.41 O
ATOM 2 P C B1878 98.772 77.685 31.639 1.00 84.29 P
ATOM 3 OP1 C B1878 100.249 77.742 31.496 1.00 83.32 O
ATOM 4 OP2 C B1878 98.182 77.024 32.827 1.00 85.13 O
ATOM 5 O5' C B1878 98.205 79.174 31.547 1.00 82.58 O
ATOM 6 C5' C B1878 98.931 80.194 30.836 1.00 81.30 C
ATOM 7 C4' C B1878 98.267 81.542 31.010 1.00 80.45 C
ATOM 8 O4' C B1878 96.936 81.506 30.439 1.00 81.67 O
ATOM 9 C3' C B1878 98.062 82.034 32.435 1.00 78.86 C
ATOM 10 O3' C B1878 99.236 82.697 32.894 1.00 76.71 O
ATOM 11 C2' C B1878 96.914 83.026 32.279 1.00 79.46 C
ATOM 12 O2' C B1878 97.341 84.290 31.820 1.00 78.06 O
ATOM 13 C1' C B1878 96.081 82.367 31.177 1.00 81.00 C
ATOM 14 N1 C B1878 94.916 81.595 31.652 1.00 82.02 N
ATOM 15 C2 C B1878 93.786 82.291 32.100 1.00 82.23 C
ATOM 16 O2 C B1878 93.808 83.537 32.116 1.00 82.11 O
ATOM 17 N3 C B1878 92.700 81.588 32.504 1.00 83.09 N
ATOM 18 C4 C B1878 92.714 80.250 32.470 1.00 82.60 C
ATOM 19 N4 C B1878 91.610 79.600 32.855 1.00 81.93 N
ATOM 20 C5 C B1878 93.856 79.520 32.036 1.00 82.00 C
ATOM 21 C6 C B1878 94.924 80.224 31.643 1.00 82.57 C
ATOM 22 P A B1879 99.531 82.820 34.467 1.00 76.76 P
ATOM 23 OP1 A B1879 100.436 83.990 34.657 1.00 74.37 O
ATOM 24 OP2 A B1879 99.972 81.473 34.925 1.00 76.41 O
ATOM 25 O5' A B1879 98.113 83.187 35.112 1.00 76.26 O
TER
ATOM 2 P A A1877 94.012 74.206 32.761 1.00 80.17 P
ATOM 3 OP1 A A1877 92.622 74.042 32.263 1.00 79.22 O
ATOM 4 OP2 A A1877 94.909 73.022 32.838 1.00 80.57 O
ATOM 5 O5' A A1877 94.745 75.316 31.879 1.00 82.20 O
ATOM 6 C5' A A1877 94.915 75.140 30.462 1.00 84.33 C
ATOM 7 C4' A A1877 96.343 75.432 30.057 1.00 86.10 C
ATOM 8 O4' A A1877 96.529 75.000 28.685 1.00 88.31 O
ATOM 9 C3' A A1877 96.781 76.891 30.098 1.00 86.90 C
ATOM 10 O3' A A1877 98.193 76.947 30.331 1.00 85.41 O
ATOM 11 C2' A A1877 96.483 77.348 28.672 1.00 88.66 C
ATOM 12 O2' A A1877 97.254 78.474 28.301 1.00 88.54 O
ATOM 13 C1' A A1877 96.882 76.103 27.876 1.00 90.93 C
ATOM 14 N9 A A1877 96.244 75.923 26.566 1.00 96.03 N
ATOM 15 C8 A A1877 95.493 74.844 26.149 1.00 96.84 C
ATOM 16 N7 A A1877 95.062 74.941 24.914 1.00 98.34 N
ATOM 17 C5 A A1877 95.554 76.166 24.483 1.00100.13 C
ATOM 18 C6 A A1877 95.438 76.857 23.257 1.00101.64 C
ATOM 19 N6 A A1877 94.763 76.389 22.201 1.00102.16 N
ATOM 20 N1 A A1877 96.047 78.062 23.154 1.00102.61 N
ATOM 21 C2 A A1877 96.721 78.535 24.214 1.00102.25 C
ATOM 22 N3 A A1877 96.899 77.982 25.418 1.00101.50 N
ATOM 23 C4 A A1877 96.283 76.785 25.490 1.00 99.43 C
ATOM 24 P C A1878 98.772 77.685 31.639 1.00 84.29 P
ATOM 25 OP1 C A1878 100.249 77.742 31.496 1.00 83.32 O
ATOM 26 OP2 C A1878 98.182 77.024 32.827 1.00 85.13 O
ATOM 27 O5' C A1878 98.205 79.174 31.547 1.00 82.58 O
TER
ATOM 1 O3' A B1877 98.193 76.947 30.331 1.00 85.41 O
ATOM 2 P C B1878 98.772 77.685 31.639 1.00 84.29 P
ATOM 3 OP1 C B1878 100.249 77.742 31.496 1.00 83.32 O
ATOM 4 OP2 C B1878 98.182 77.024 32.827 1.00 85.13 O
ATOM 5 O5' C B1878 98.205 79.174 31.547 1.00 82.58 O
ATOM 6 C5' C B1878 98.931 80.194 30.836 1.00 81.30 C
ATOM 7 C4' C B1878 98.267 81.542 31.010 1.00 80.45 C
ATOM 8 O4' C B1878 96.936 81.506 30.439 1.00 81.67 O
ATOM 9 C3' C B1878 98.062 82.034 32.435 1.00 78.86 C
ATOM 10 O3' C B1878 99.236 82.697 32.894 1.00 76.71 O
ATOM 11 C2' C B1878 96.914 83.026 32.279 1.00 79.46 C
ATOM 12 O2' C B1878 97.341 84.290 31.820 1.00 78.06 O
ATOM 13 C1' C B1878 96.081 82.367 31.177 1.00 81.00 C
ATOM 14 N1 C B1878 94.916 81.595 31.652 1.00 82.02 N
ATOM 15 C2 C B1878 93.786 82.291 32.100 1.00 82.23 C
ATOM 16 O2 C B1878 93.808 83.537 32.116 1.00 82.11 O
ATOM 17 N3 C B1878 92.700 81.588 32.504 1.00 83.09 N
ATOM 18 C4 C B1878 92.714 80.250 32.470 1.00 82.60 C
ATOM 19 N4 C B1878 91.610 79.600 32.855 1.00 81.93 N
ATOM 20 C5 C B1878 93.856 79.520 32.036 1.00 82.00 C
ATOM 21 C6 C B1878 94.924 80.224 31.643 1.00 82.57 C
ATOM 22 P A B1879 99.531 82.820 34.467 1.00 76.76 P
ATOM 23 OP1 A B1879 100.436 83.990 34.657 1.00 74.37 O
ATOM 24 OP2 A B1879 99.972 81.473 34.925 1.00 76.41 O
ATOM 25 O5' A B1879 98.113 83.187 35.112 1.00 76.26 O
TER
Atoms:
OP1: (92.622,74.042,32.263)
OP2: (94.909,73.022,32.838)
C3': (96.781,76.891,30.098)
C1': (96.882,76.103,27.876)
C5': (94.915,75.140,30.462)
O4': (96.529,75.000,28.685)
C8: (95.493,74.844,26.149)
O2': (97.254,78.474,28.301)
C6: (95.438,76.857,23.257)
C5: (95.554,76.166,24.483)
C4: (96.283,76.785,25.490)
P: (94.012,74.206,32.761)
C4': (96.343,75.432,30.057)
C2': (96.483,77.348,28.672)
C2: (96.721,78.535,24.214)
N1: (96.047,78.062,23.154)
N3: (96.899,77.982,25.418)
N6: (94.763,76.389,22.201)
N7: (95.062,74.941,24.914)
N9: (96.244,75.923,26.566)
O5': (94.745,75.316,31.879)
O3': (98.193,76.947,30.331)
OP2: (94.909,73.022,32.838)
C3': (96.781,76.891,30.098)
C1': (96.882,76.103,27.876)
C5': (94.915,75.140,30.462)
O4': (96.529,75.000,28.685)
C8: (95.493,74.844,26.149)
O2': (97.254,78.474,28.301)
C6: (95.438,76.857,23.257)
C5: (95.554,76.166,24.483)
C4: (96.283,76.785,25.490)
P: (94.012,74.206,32.761)
C4': (96.343,75.432,30.057)
C2': (96.483,77.348,28.672)
C2: (96.721,78.535,24.214)
N1: (96.047,78.062,23.154)
N3: (96.899,77.982,25.418)
N6: (94.763,76.389,22.201)
N7: (95.062,74.941,24.914)
N9: (96.244,75.923,26.566)
O5': (94.745,75.316,31.879)
O3': (98.193,76.947,30.331)
C2: (93.786,82.291,32.100)
OP1: (100.249,77.742,31.496)
OP2: (98.182,77.024,32.827)
C4: (92.714,80.250,32.470)
O5': (98.205,79.174,31.547)
C3': (98.062,82.034,32.435)
C1': (96.081,82.367,31.177)
O4': (96.936,81.506,30.439)
C5': (98.931,80.194,30.836)
P: (98.772,77.685,31.639)
O2: (93.808,83.537,32.116)
C4': (98.267,81.542,31.010)
C2': (96.914,83.026,32.279)
O2': (97.341,84.290,31.820)
N1: (94.916,81.595,31.652)
N3: (92.700,81.588,32.504)
N4: (91.610,79.600,32.855)
C6: (94.924,80.224,31.643)
C5: (93.856,79.520,32.036)
O3': (99.236,82.697,32.894)
OP1: (100.249,77.742,31.496)
OP2: (98.182,77.024,32.827)
C4: (92.714,80.250,32.470)
O5': (98.205,79.174,31.547)
C3': (98.062,82.034,32.435)
C1': (96.081,82.367,31.177)
O4': (96.936,81.506,30.439)
C5': (98.931,80.194,30.836)
P: (98.772,77.685,31.639)
O2: (93.808,83.537,32.116)
C4': (98.267,81.542,31.010)
C2': (96.914,83.026,32.279)
O2': (97.341,84.290,31.820)
N1: (94.916,81.595,31.652)
N3: (92.700,81.588,32.504)
N4: (91.610,79.600,32.855)
C6: (94.924,80.224,31.643)
C5: (93.856,79.520,32.036)
O3': (99.236,82.697,32.894)
Image (generated by PyMOL):