Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:39:310
Extra
PDB:
ATOM 1 O3' C A 8 33.682 -67.629 24.158 1.00 56.56 O
ATOM 2 P C A 9 32.549 -66.886 25.053 1.00 57.60 P
ATOM 3 OP1 C A 9 32.987 -65.457 25.198 1.00 56.95 O
ATOM 4 OP2 C A 9 32.322 -67.684 26.267 1.00 57.20 O
ATOM 5 O5' C A 9 31.239 -66.977 24.162 1.00 58.37 O
ATOM 6 C5' C A 9 31.264 -66.821 22.764 1.00 59.16 C
ATOM 7 C4' C A 9 30.005 -67.361 22.173 1.00 59.91 C
ATOM 8 O4' C A 9 29.883 -68.763 22.533 1.00 60.23 O
ATOM 9 C3' C A 9 28.738 -66.693 22.668 1.00 59.56 C
ATOM 10 O3' C A 9 27.803 -66.687 21.612 1.00 60.35 O
ATOM 11 C2' C A 9 28.266 -67.635 23.769 1.00 59.32 C
ATOM 12 O2' C A 9 26.888 -67.564 24.032 1.00 59.36 O
ATOM 13 C1' C A 9 28.669 -68.988 23.202 1.00 60.10 C
ATOM 14 N1 C A 9 28.910 -70.041 24.212 1.00 59.85 N
ATOM 15 C2 C A 9 28.150 -71.224 24.208 1.00 60.43 C
ATOM 16 O2 C A 9 27.257 -71.341 23.385 1.00 61.12 O
ATOM 17 N3 C A 9 28.356 -72.210 25.117 1.00 60.23 N
ATOM 18 C4 C A 9 29.334 -72.062 26.023 1.00 59.47 C
ATOM 19 N4 C A 9 29.507 -73.048 26.899 1.00 59.31 N
ATOM 20 C5 C A 9 30.168 -70.898 26.061 1.00 58.86 C
ATOM 21 C6 C A 9 29.926 -69.934 25.138 1.00 59.08 C
ATOM 22 P A A 10 27.112 -65.326 21.145 1.00 55.84 P
ATOM 23 OP1 A A 10 28.152 -64.477 20.537 1.00 55.74 O
ATOM 24 OP2 A A 10 26.366 -64.816 22.308 1.00 55.07 O
ATOM 25 O5' A A 10 26.092 -65.820 20.007 1.00 56.88 O
TER
ATOM 1 O3' C B 9 27.803 -66.687 21.612 1.00 60.35 O
ATOM 2 P A B 10 27.112 -65.326 21.145 1.00 55.84 P
ATOM 3 OP1 A B 10 28.152 -64.477 20.537 1.00 55.74 O
ATOM 4 OP2 A B 10 26.366 -64.816 22.308 1.00 55.07 O
ATOM 5 O5' A B 10 26.092 -65.820 20.007 1.00 56.88 O
ATOM 6 C5' A B 10 26.404 -66.941 19.190 1.00 57.74 C
ATOM 7 C4' A B 10 25.650 -66.913 17.898 1.00 58.66 C
ATOM 8 O4' A B 10 24.236 -66.866 18.173 1.00 58.70 O
ATOM 9 C3' A B 10 25.915 -65.720 16.973 1.00 58.76 C
ATOM 10 O3' A B 10 27.058 -65.922 16.145 1.00 59.18 O
ATOM 11 C2' A B 10 24.608 -65.623 16.179 1.00 59.43 C
ATOM 12 O2' A B 10 24.593 -66.564 15.108 1.00 60.46 O
ATOM 13 C1' A B 10 23.576 -66.058 17.222 1.00 59.11 C
ATOM 14 N9 A B 10 23.008 -64.911 17.930 1.00 58.34 N
ATOM 15 C8 A B 10 23.224 -64.635 19.250 1.00 57.39 C
ATOM 16 N7 A B 10 22.609 -63.553 19.664 1.00 56.87 N
ATOM 17 C5 A B 10 21.959 -63.092 18.519 1.00 57.51 C
ATOM 18 C6 A B 10 21.155 -61.983 18.291 1.00 57.41 C
ATOM 19 N6 A B 10 20.839 -61.090 19.236 1.00 56.59 N
ATOM 20 N1 A B 10 20.666 -61.837 17.055 1.00 58.20 N
ATOM 21 C2 A B 10 20.971 -62.713 16.107 1.00 59.04 C
ATOM 22 N3 A B 10 21.724 -63.795 16.199 1.00 59.23 N
ATOM 23 C4 A B 10 22.190 -63.926 17.447 1.00 58.43 C
ATOM 24 P U B 11 28.027 -64.717 15.737 1.00 64.32 P
ATOM 25 OP1 U B 11 29.375 -65.103 16.142 1.00 64.00 O
ATOM 26 OP2 U B 11 27.463 -63.500 16.270 1.00 63.63 O
ATOM 27 O5' U B 11 27.942 -64.703 14.162 1.00 65.34 O
TER
ATOM 2 P C A 9 32.549 -66.886 25.053 1.00 57.60 P
ATOM 3 OP1 C A 9 32.987 -65.457 25.198 1.00 56.95 O
ATOM 4 OP2 C A 9 32.322 -67.684 26.267 1.00 57.20 O
ATOM 5 O5' C A 9 31.239 -66.977 24.162 1.00 58.37 O
ATOM 6 C5' C A 9 31.264 -66.821 22.764 1.00 59.16 C
ATOM 7 C4' C A 9 30.005 -67.361 22.173 1.00 59.91 C
ATOM 8 O4' C A 9 29.883 -68.763 22.533 1.00 60.23 O
ATOM 9 C3' C A 9 28.738 -66.693 22.668 1.00 59.56 C
ATOM 10 O3' C A 9 27.803 -66.687 21.612 1.00 60.35 O
ATOM 11 C2' C A 9 28.266 -67.635 23.769 1.00 59.32 C
ATOM 12 O2' C A 9 26.888 -67.564 24.032 1.00 59.36 O
ATOM 13 C1' C A 9 28.669 -68.988 23.202 1.00 60.10 C
ATOM 14 N1 C A 9 28.910 -70.041 24.212 1.00 59.85 N
ATOM 15 C2 C A 9 28.150 -71.224 24.208 1.00 60.43 C
ATOM 16 O2 C A 9 27.257 -71.341 23.385 1.00 61.12 O
ATOM 17 N3 C A 9 28.356 -72.210 25.117 1.00 60.23 N
ATOM 18 C4 C A 9 29.334 -72.062 26.023 1.00 59.47 C
ATOM 19 N4 C A 9 29.507 -73.048 26.899 1.00 59.31 N
ATOM 20 C5 C A 9 30.168 -70.898 26.061 1.00 58.86 C
ATOM 21 C6 C A 9 29.926 -69.934 25.138 1.00 59.08 C
ATOM 22 P A A 10 27.112 -65.326 21.145 1.00 55.84 P
ATOM 23 OP1 A A 10 28.152 -64.477 20.537 1.00 55.74 O
ATOM 24 OP2 A A 10 26.366 -64.816 22.308 1.00 55.07 O
ATOM 25 O5' A A 10 26.092 -65.820 20.007 1.00 56.88 O
TER
ATOM 1 O3' C B 9 27.803 -66.687 21.612 1.00 60.35 O
ATOM 2 P A B 10 27.112 -65.326 21.145 1.00 55.84 P
ATOM 3 OP1 A B 10 28.152 -64.477 20.537 1.00 55.74 O
ATOM 4 OP2 A B 10 26.366 -64.816 22.308 1.00 55.07 O
ATOM 5 O5' A B 10 26.092 -65.820 20.007 1.00 56.88 O
ATOM 6 C5' A B 10 26.404 -66.941 19.190 1.00 57.74 C
ATOM 7 C4' A B 10 25.650 -66.913 17.898 1.00 58.66 C
ATOM 8 O4' A B 10 24.236 -66.866 18.173 1.00 58.70 O
ATOM 9 C3' A B 10 25.915 -65.720 16.973 1.00 58.76 C
ATOM 10 O3' A B 10 27.058 -65.922 16.145 1.00 59.18 O
ATOM 11 C2' A B 10 24.608 -65.623 16.179 1.00 59.43 C
ATOM 12 O2' A B 10 24.593 -66.564 15.108 1.00 60.46 O
ATOM 13 C1' A B 10 23.576 -66.058 17.222 1.00 59.11 C
ATOM 14 N9 A B 10 23.008 -64.911 17.930 1.00 58.34 N
ATOM 15 C8 A B 10 23.224 -64.635 19.250 1.00 57.39 C
ATOM 16 N7 A B 10 22.609 -63.553 19.664 1.00 56.87 N
ATOM 17 C5 A B 10 21.959 -63.092 18.519 1.00 57.51 C
ATOM 18 C6 A B 10 21.155 -61.983 18.291 1.00 57.41 C
ATOM 19 N6 A B 10 20.839 -61.090 19.236 1.00 56.59 N
ATOM 20 N1 A B 10 20.666 -61.837 17.055 1.00 58.20 N
ATOM 21 C2 A B 10 20.971 -62.713 16.107 1.00 59.04 C
ATOM 22 N3 A B 10 21.724 -63.795 16.199 1.00 59.23 N
ATOM 23 C4 A B 10 22.190 -63.926 17.447 1.00 58.43 C
ATOM 24 P U B 11 28.027 -64.717 15.737 1.00 64.32 P
ATOM 25 OP1 U B 11 29.375 -65.103 16.142 1.00 64.00 O
ATOM 26 OP2 U B 11 27.463 -63.500 16.270 1.00 63.63 O
ATOM 27 O5' U B 11 27.942 -64.703 14.162 1.00 65.34 O
TER
Atoms:
C2: (28.150,-71.224,24.208)
OP1: (32.987,-65.457,25.198)
OP2: (32.322,-67.684,26.267)
C4: (29.334,-72.062,26.023)
O5': (31.239,-66.977,24.162)
C3': (28.738,-66.693,22.668)
C1': (28.669,-68.988,23.202)
O4': (29.883,-68.763,22.533)
C5': (31.264,-66.821,22.764)
P: (32.549,-66.886,25.053)
O2: (27.257,-71.341,23.385)
C4': (30.005,-67.361,22.173)
C2': (28.266,-67.635,23.769)
O2': (26.888,-67.564,24.032)
N1: (28.910,-70.041,24.212)
N3: (28.356,-72.210,25.117)
N4: (29.507,-73.048,26.899)
C6: (29.926,-69.934,25.138)
C5: (30.168,-70.898,26.061)
O3': (27.803,-66.687,21.612)
OP1: (32.987,-65.457,25.198)
OP2: (32.322,-67.684,26.267)
C4: (29.334,-72.062,26.023)
O5': (31.239,-66.977,24.162)
C3': (28.738,-66.693,22.668)
C1': (28.669,-68.988,23.202)
O4': (29.883,-68.763,22.533)
C5': (31.264,-66.821,22.764)
P: (32.549,-66.886,25.053)
O2: (27.257,-71.341,23.385)
C4': (30.005,-67.361,22.173)
C2': (28.266,-67.635,23.769)
O2': (26.888,-67.564,24.032)
N1: (28.910,-70.041,24.212)
N3: (28.356,-72.210,25.117)
N4: (29.507,-73.048,26.899)
C6: (29.926,-69.934,25.138)
C5: (30.168,-70.898,26.061)
O3': (27.803,-66.687,21.612)
OP1: (28.152,-64.477,20.537)
OP2: (26.366,-64.816,22.308)
C3': (25.915,-65.720,16.973)
C1': (23.576,-66.058,17.222)
C5': (26.404,-66.941,19.190)
O4': (24.236,-66.866,18.173)
C8: (23.224,-64.635,19.250)
O2': (24.593,-66.564,15.108)
C6: (21.155,-61.983,18.291)
C5: (21.959,-63.092,18.519)
C4: (22.190,-63.926,17.447)
P: (27.112,-65.326,21.145)
C4': (25.650,-66.913,17.898)
C2': (24.608,-65.623,16.179)
C2: (20.971,-62.713,16.107)
N1: (20.666,-61.837,17.055)
N3: (21.724,-63.795,16.199)
N6: (20.839,-61.090,19.236)
N7: (22.609,-63.553,19.664)
N9: (23.008,-64.911,17.930)
O5': (26.092,-65.820,20.007)
O3': (27.058,-65.922,16.145)
OP2: (26.366,-64.816,22.308)
C3': (25.915,-65.720,16.973)
C1': (23.576,-66.058,17.222)
C5': (26.404,-66.941,19.190)
O4': (24.236,-66.866,18.173)
C8: (23.224,-64.635,19.250)
O2': (24.593,-66.564,15.108)
C6: (21.155,-61.983,18.291)
C5: (21.959,-63.092,18.519)
C4: (22.190,-63.926,17.447)
P: (27.112,-65.326,21.145)
C4': (25.650,-66.913,17.898)
C2': (24.608,-65.623,16.179)
C2: (20.971,-62.713,16.107)
N1: (20.666,-61.837,17.055)
N3: (21.724,-63.795,16.199)
N6: (20.839,-61.090,19.236)
N7: (22.609,-63.553,19.664)
N9: (23.008,-64.911,17.930)
O5': (26.092,-65.820,20.007)
O3': (27.058,-65.922,16.145)
Image (generated by PyMOL):