Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A40:A39
Extra
PDB:
ATOM 1 O3' C A 39 -9.596 44.828 -41.274 1.00119.12 O
ATOM 2 P U A 40 -8.728 43.619 -41.058 1.00118.10 P
ATOM 3 OP1 U A 40 -8.228 43.008 -42.355 1.00118.17 O
ATOM 4 OP2 U A 40 -9.769 42.742 -40.443 1.00118.11 O
ATOM 5 O5' U A 40 -7.506 44.023 -40.143 1.00116.81 O
ATOM 6 C5' U A 40 -6.266 44.456 -40.757 1.00115.09 C
ATOM 7 C4' U A 40 -6.033 45.884 -40.307 1.00113.69 C
ATOM 8 O4' U A 40 -7.261 46.455 -39.924 1.00113.52 O
ATOM 9 C3' U A 40 -5.134 46.022 -39.078 1.00112.65 C
ATOM 10 O3' U A 40 -3.741 46.012 -39.378 1.00110.91 O
ATOM 11 C2' U A 40 -5.584 47.371 -38.504 1.00113.01 C
ATOM 12 O2' U A 40 -4.924 48.376 -39.269 1.00112.99 O
ATOM 13 C1' U A 40 -7.056 47.341 -38.805 1.00113.44 C
ATOM 14 N1 U A 40 -7.830 46.928 -37.617 1.00113.65 N
ATOM 15 C2 U A 40 -7.687 47.706 -36.483 1.00113.75 C
ATOM 16 O2 U A 40 -6.943 48.681 -36.470 1.00113.71 O
ATOM 17 N3 U A 40 -8.393 47.332 -35.378 1.00113.79 N
ATOM 18 C4 U A 40 -9.223 46.248 -35.364 1.00113.80 C
ATOM 19 O4 U A 40 -9.825 46.012 -34.272 1.00113.89 O
ATOM 20 C5 U A 40 -9.359 45.460 -36.538 1.00113.75 C
ATOM 21 C6 U A 40 -8.648 45.844 -37.617 1.00113.72 C
ATOM 22 P G A 41 -3.002 44.554 -39.364 1.00109.37 P
ATOM 23 OP1 G A 41 -3.218 43.983 -40.744 1.00109.39 O
ATOM 24 OP2 G A 41 -3.741 43.826 -38.299 1.00109.40 O
ATOM 25 O5' G A 41 -1.518 44.998 -39.037 1.00107.66 O
TER
ATOM 1 O3' C B 38 -14.832 43.016 -40.105 1.00122.64 O
ATOM 2 P C B 39 -13.687 42.129 -39.517 1.00122.28 P
ATOM 3 OP1 C B 39 -13.916 40.729 -40.007 1.00122.32 O
ATOM 4 OP2 C B 39 -13.720 42.232 -38.039 1.00122.29 O
ATOM 5 O5' C B 39 -12.442 42.940 -40.186 1.00121.85 O
ATOM 6 C5' C B 39 -12.785 44.016 -41.176 1.00121.33 C
ATOM 7 C4' C B 39 -11.951 45.353 -41.045 1.00120.88 C
ATOM 8 O4' C B 39 -12.683 46.337 -40.214 1.00121.05 O
ATOM 9 C3' C B 39 -10.598 45.259 -40.359 1.00120.36 C
ATOM 10 O3' C B 39 -9.596 44.828 -41.274 1.00119.12 O
ATOM 11 C2' C B 39 -10.336 46.697 -39.881 1.00120.81 C
ATOM 12 O2' C B 39 -9.889 47.506 -40.957 1.00120.91 O
ATOM 13 C1' C B 39 -11.742 47.184 -39.501 1.00121.24 C
ATOM 14 N1 C B 39 -11.954 47.153 -38.031 1.00121.55 N
ATOM 15 C2 C B 39 -11.423 48.208 -37.316 1.00121.71 C
ATOM 16 O2 C B 39 -10.806 49.114 -37.895 1.00121.79 O
ATOM 17 N3 C B 39 -11.605 48.208 -35.965 1.00121.79 N
ATOM 18 C4 C B 39 -12.287 47.223 -35.323 1.00121.81 C
ATOM 19 N4 C B 39 -12.439 47.272 -34.012 1.00121.93 N
ATOM 20 C5 C B 39 -12.841 46.133 -36.070 1.00121.73 C
ATOM 21 C6 C B 39 -12.640 46.160 -37.412 1.00121.70 C
ATOM 22 P U B 40 -8.728 43.619 -41.058 1.00118.10 P
ATOM 23 OP1 U B 40 -8.228 43.008 -42.355 1.00118.17 O
ATOM 24 OP2 U B 40 -9.769 42.742 -40.443 1.00118.11 O
ATOM 25 O5' U B 40 -7.506 44.023 -40.143 1.00116.81 O
TER
ATOM 2 P U A 40 -8.728 43.619 -41.058 1.00118.10 P
ATOM 3 OP1 U A 40 -8.228 43.008 -42.355 1.00118.17 O
ATOM 4 OP2 U A 40 -9.769 42.742 -40.443 1.00118.11 O
ATOM 5 O5' U A 40 -7.506 44.023 -40.143 1.00116.81 O
ATOM 6 C5' U A 40 -6.266 44.456 -40.757 1.00115.09 C
ATOM 7 C4' U A 40 -6.033 45.884 -40.307 1.00113.69 C
ATOM 8 O4' U A 40 -7.261 46.455 -39.924 1.00113.52 O
ATOM 9 C3' U A 40 -5.134 46.022 -39.078 1.00112.65 C
ATOM 10 O3' U A 40 -3.741 46.012 -39.378 1.00110.91 O
ATOM 11 C2' U A 40 -5.584 47.371 -38.504 1.00113.01 C
ATOM 12 O2' U A 40 -4.924 48.376 -39.269 1.00112.99 O
ATOM 13 C1' U A 40 -7.056 47.341 -38.805 1.00113.44 C
ATOM 14 N1 U A 40 -7.830 46.928 -37.617 1.00113.65 N
ATOM 15 C2 U A 40 -7.687 47.706 -36.483 1.00113.75 C
ATOM 16 O2 U A 40 -6.943 48.681 -36.470 1.00113.71 O
ATOM 17 N3 U A 40 -8.393 47.332 -35.378 1.00113.79 N
ATOM 18 C4 U A 40 -9.223 46.248 -35.364 1.00113.80 C
ATOM 19 O4 U A 40 -9.825 46.012 -34.272 1.00113.89 O
ATOM 20 C5 U A 40 -9.359 45.460 -36.538 1.00113.75 C
ATOM 21 C6 U A 40 -8.648 45.844 -37.617 1.00113.72 C
ATOM 22 P G A 41 -3.002 44.554 -39.364 1.00109.37 P
ATOM 23 OP1 G A 41 -3.218 43.983 -40.744 1.00109.39 O
ATOM 24 OP2 G A 41 -3.741 43.826 -38.299 1.00109.40 O
ATOM 25 O5' G A 41 -1.518 44.998 -39.037 1.00107.66 O
TER
ATOM 1 O3' C B 38 -14.832 43.016 -40.105 1.00122.64 O
ATOM 2 P C B 39 -13.687 42.129 -39.517 1.00122.28 P
ATOM 3 OP1 C B 39 -13.916 40.729 -40.007 1.00122.32 O
ATOM 4 OP2 C B 39 -13.720 42.232 -38.039 1.00122.29 O
ATOM 5 O5' C B 39 -12.442 42.940 -40.186 1.00121.85 O
ATOM 6 C5' C B 39 -12.785 44.016 -41.176 1.00121.33 C
ATOM 7 C4' C B 39 -11.951 45.353 -41.045 1.00120.88 C
ATOM 8 O4' C B 39 -12.683 46.337 -40.214 1.00121.05 O
ATOM 9 C3' C B 39 -10.598 45.259 -40.359 1.00120.36 C
ATOM 10 O3' C B 39 -9.596 44.828 -41.274 1.00119.12 O
ATOM 11 C2' C B 39 -10.336 46.697 -39.881 1.00120.81 C
ATOM 12 O2' C B 39 -9.889 47.506 -40.957 1.00120.91 O
ATOM 13 C1' C B 39 -11.742 47.184 -39.501 1.00121.24 C
ATOM 14 N1 C B 39 -11.954 47.153 -38.031 1.00121.55 N
ATOM 15 C2 C B 39 -11.423 48.208 -37.316 1.00121.71 C
ATOM 16 O2 C B 39 -10.806 49.114 -37.895 1.00121.79 O
ATOM 17 N3 C B 39 -11.605 48.208 -35.965 1.00121.79 N
ATOM 18 C4 C B 39 -12.287 47.223 -35.323 1.00121.81 C
ATOM 19 N4 C B 39 -12.439 47.272 -34.012 1.00121.93 N
ATOM 20 C5 C B 39 -12.841 46.133 -36.070 1.00121.73 C
ATOM 21 C6 C B 39 -12.640 46.160 -37.412 1.00121.70 C
ATOM 22 P U B 40 -8.728 43.619 -41.058 1.00118.10 P
ATOM 23 OP1 U B 40 -8.228 43.008 -42.355 1.00118.17 O
ATOM 24 OP2 U B 40 -9.769 42.742 -40.443 1.00118.11 O
ATOM 25 O5' U B 40 -7.506 44.023 -40.143 1.00116.81 O
TER
Atoms:
C4: (-9.223,46.248,-35.364)
N3: (-8.393,47.332,-35.378)
OP1: (-8.228,43.008,-42.355)
OP2: (-9.769,42.742,-40.443)
C2: (-7.687,47.706,-36.483)
C1': (-7.056,47.341,-38.805)
C3': (-5.134,46.022,-39.078)
O5': (-7.506,44.023,-40.143)
O4': (-7.261,46.455,-39.924)
C5': (-6.266,44.456,-40.757)
P: (-8.728,43.619,-41.058)
C4': (-6.033,45.884,-40.307)
C2': (-5.584,47.371,-38.504)
O2': (-4.924,48.376,-39.269)
N1: (-7.830,46.928,-37.617)
O4: (-9.825,46.012,-34.272)
O2: (-6.943,48.681,-36.470)
C6: (-8.648,45.844,-37.617)
C5: (-9.359,45.460,-36.538)
O3': (-3.741,46.012,-39.378)
N3: (-8.393,47.332,-35.378)
OP1: (-8.228,43.008,-42.355)
OP2: (-9.769,42.742,-40.443)
C2: (-7.687,47.706,-36.483)
C1': (-7.056,47.341,-38.805)
C3': (-5.134,46.022,-39.078)
O5': (-7.506,44.023,-40.143)
O4': (-7.261,46.455,-39.924)
C5': (-6.266,44.456,-40.757)
P: (-8.728,43.619,-41.058)
C4': (-6.033,45.884,-40.307)
C2': (-5.584,47.371,-38.504)
O2': (-4.924,48.376,-39.269)
N1: (-7.830,46.928,-37.617)
O4: (-9.825,46.012,-34.272)
O2: (-6.943,48.681,-36.470)
C6: (-8.648,45.844,-37.617)
C5: (-9.359,45.460,-36.538)
O3': (-3.741,46.012,-39.378)
C2: (-11.423,48.208,-37.316)
OP1: (-13.916,40.729,-40.007)
OP2: (-13.720,42.232,-38.039)
C4: (-12.287,47.223,-35.323)
O5': (-12.442,42.940,-40.186)
C3': (-10.598,45.259,-40.359)
C1': (-11.742,47.184,-39.501)
O4': (-12.683,46.337,-40.214)
C5': (-12.785,44.016,-41.176)
P: (-13.687,42.129,-39.517)
O2: (-10.806,49.114,-37.895)
C4': (-11.951,45.353,-41.045)
C2': (-10.336,46.697,-39.881)
O2': (-9.889,47.506,-40.957)
N1: (-11.954,47.153,-38.031)
N3: (-11.605,48.208,-35.965)
N4: (-12.439,47.272,-34.012)
C6: (-12.640,46.160,-37.412)
C5: (-12.841,46.133,-36.070)
O3': (-9.596,44.828,-41.274)
OP1: (-13.916,40.729,-40.007)
OP2: (-13.720,42.232,-38.039)
C4: (-12.287,47.223,-35.323)
O5': (-12.442,42.940,-40.186)
C3': (-10.598,45.259,-40.359)
C1': (-11.742,47.184,-39.501)
O4': (-12.683,46.337,-40.214)
C5': (-12.785,44.016,-41.176)
P: (-13.687,42.129,-39.517)
O2: (-10.806,49.114,-37.895)
C4': (-11.951,45.353,-41.045)
C2': (-10.336,46.697,-39.881)
O2': (-9.889,47.506,-40.957)
N1: (-11.954,47.153,-38.031)
N3: (-11.605,48.208,-35.965)
N4: (-12.439,47.272,-34.012)
C6: (-12.640,46.160,-37.412)
C5: (-12.841,46.133,-36.070)
O3': (-9.596,44.828,-41.274)
Image (generated by PyMOL):