Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0701:0700
Extra
PDB:
ATOM 1 O3' C A 700 5.553 54.765 54.994 1.00 71.50 O
ATOM 2 P U A 701 4.121 55.194 55.587 1.00 73.47 P
ATOM 3 OP1 U A 701 3.068 54.569 54.748 1.00 73.93 O
ATOM 4 OP2 U A 701 4.117 56.665 55.790 1.00 73.33 O
ATOM 5 O5' U A 701 4.109 54.513 57.024 1.00 73.64 O
ATOM 6 C5' U A 701 2.909 54.447 57.813 1.00 74.53 C
ATOM 7 C4' U A 701 2.980 53.262 58.751 1.00 75.86 C
ATOM 8 O4' U A 701 2.942 52.036 57.968 1.00 75.45 O
ATOM 9 C3' U A 701 4.240 53.177 59.609 1.00 76.05 C
ATOM 10 O3' U A 701 3.921 52.571 60.855 1.00 78.49 O
ATOM 11 C2' U A 701 5.145 52.269 58.780 1.00 75.18 C
ATOM 12 O2' U A 701 6.125 51.595 59.544 1.00 73.10 O
ATOM 13 C1' U A 701 4.132 51.296 58.173 1.00 74.71 C
ATOM 14 N1 U A 701 4.542 50.738 56.873 1.00 75.43 N
ATOM 15 C2 U A 701 4.635 49.358 56.749 1.00 75.77 C
ATOM 16 O2 U A 701 4.379 48.586 57.660 1.00 77.24 O
ATOM 17 N3 U A 701 5.035 48.914 55.512 1.00 74.77 N
ATOM 18 C4 U A 701 5.341 49.685 54.411 1.00 74.10 C
ATOM 19 O4 U A 701 5.703 49.138 53.371 1.00 74.11 O
ATOM 20 C5 U A 701 5.213 51.093 54.613 1.00 74.55 C
ATOM 21 C6 U A 701 4.830 51.561 55.803 1.00 75.17 C
ATOM 22 P U A 702 3.581 53.496 62.126 1.00 80.42 P
ATOM 23 OP1 U A 702 3.094 52.610 63.210 1.00 81.38 O
ATOM 24 OP2 U A 702 2.724 54.625 61.662 1.00 78.77 O
ATOM 25 O5' U A 702 4.995 54.086 62.565 1.00 81.60 O
TER
ATOM 1 O3' G B 699 8.523 59.236 52.388 1.00 61.07 O
ATOM 2 P C B 700 7.086 59.027 53.075 1.00 62.52 P
ATOM 3 OP1 C B 700 6.153 58.694 51.969 1.00 63.14 O
ATOM 4 OP2 C B 700 6.779 60.173 53.971 1.00 61.25 O
ATOM 5 O5' C B 700 7.301 57.739 53.986 1.00 63.81 O
ATOM 6 C5' C B 700 7.736 56.494 53.405 1.00 66.61 C
ATOM 7 C4' C B 700 7.858 55.429 54.469 1.00 69.10 C
ATOM 8 O4' C B 700 9.051 55.641 55.272 1.00 68.43 O
ATOM 9 C3' C B 700 6.735 55.384 55.493 1.00 70.30 C
ATOM 10 O3' C B 700 5.553 54.765 54.994 1.00 71.50 O
ATOM 11 C2' C B 700 7.386 54.621 56.639 1.00 69.98 C
ATOM 12 O2' C B 700 7.417 53.223 56.436 1.00 70.67 O
ATOM 13 C1' C B 700 8.810 55.190 56.598 1.00 68.70 C
ATOM 14 N1 C B 700 8.969 56.323 57.529 1.00 67.87 N
ATOM 15 C2 C B 700 9.473 56.071 58.811 1.00 67.36 C
ATOM 16 O2 C B 700 9.827 54.924 59.100 1.00 69.13 O
ATOM 17 N3 C B 700 9.567 57.085 59.698 1.00 66.57 N
ATOM 18 C4 C B 700 9.195 58.316 59.344 1.00 65.82 C
ATOM 19 N4 C B 700 9.292 59.282 60.258 1.00 63.83 N
ATOM 20 C5 C B 700 8.704 58.609 58.037 1.00 65.79 C
ATOM 21 C6 C B 700 8.611 57.594 57.169 1.00 66.88 C
ATOM 22 P U B 701 4.121 55.194 55.587 1.00 73.47 P
ATOM 23 OP1 U B 701 3.068 54.569 54.748 1.00 73.93 O
ATOM 24 OP2 U B 701 4.117 56.665 55.790 1.00 73.33 O
ATOM 25 O5' U B 701 4.109 54.513 57.024 1.00 73.64 O
TER
ATOM 2 P U A 701 4.121 55.194 55.587 1.00 73.47 P
ATOM 3 OP1 U A 701 3.068 54.569 54.748 1.00 73.93 O
ATOM 4 OP2 U A 701 4.117 56.665 55.790 1.00 73.33 O
ATOM 5 O5' U A 701 4.109 54.513 57.024 1.00 73.64 O
ATOM 6 C5' U A 701 2.909 54.447 57.813 1.00 74.53 C
ATOM 7 C4' U A 701 2.980 53.262 58.751 1.00 75.86 C
ATOM 8 O4' U A 701 2.942 52.036 57.968 1.00 75.45 O
ATOM 9 C3' U A 701 4.240 53.177 59.609 1.00 76.05 C
ATOM 10 O3' U A 701 3.921 52.571 60.855 1.00 78.49 O
ATOM 11 C2' U A 701 5.145 52.269 58.780 1.00 75.18 C
ATOM 12 O2' U A 701 6.125 51.595 59.544 1.00 73.10 O
ATOM 13 C1' U A 701 4.132 51.296 58.173 1.00 74.71 C
ATOM 14 N1 U A 701 4.542 50.738 56.873 1.00 75.43 N
ATOM 15 C2 U A 701 4.635 49.358 56.749 1.00 75.77 C
ATOM 16 O2 U A 701 4.379 48.586 57.660 1.00 77.24 O
ATOM 17 N3 U A 701 5.035 48.914 55.512 1.00 74.77 N
ATOM 18 C4 U A 701 5.341 49.685 54.411 1.00 74.10 C
ATOM 19 O4 U A 701 5.703 49.138 53.371 1.00 74.11 O
ATOM 20 C5 U A 701 5.213 51.093 54.613 1.00 74.55 C
ATOM 21 C6 U A 701 4.830 51.561 55.803 1.00 75.17 C
ATOM 22 P U A 702 3.581 53.496 62.126 1.00 80.42 P
ATOM 23 OP1 U A 702 3.094 52.610 63.210 1.00 81.38 O
ATOM 24 OP2 U A 702 2.724 54.625 61.662 1.00 78.77 O
ATOM 25 O5' U A 702 4.995 54.086 62.565 1.00 81.60 O
TER
ATOM 1 O3' G B 699 8.523 59.236 52.388 1.00 61.07 O
ATOM 2 P C B 700 7.086 59.027 53.075 1.00 62.52 P
ATOM 3 OP1 C B 700 6.153 58.694 51.969 1.00 63.14 O
ATOM 4 OP2 C B 700 6.779 60.173 53.971 1.00 61.25 O
ATOM 5 O5' C B 700 7.301 57.739 53.986 1.00 63.81 O
ATOM 6 C5' C B 700 7.736 56.494 53.405 1.00 66.61 C
ATOM 7 C4' C B 700 7.858 55.429 54.469 1.00 69.10 C
ATOM 8 O4' C B 700 9.051 55.641 55.272 1.00 68.43 O
ATOM 9 C3' C B 700 6.735 55.384 55.493 1.00 70.30 C
ATOM 10 O3' C B 700 5.553 54.765 54.994 1.00 71.50 O
ATOM 11 C2' C B 700 7.386 54.621 56.639 1.00 69.98 C
ATOM 12 O2' C B 700 7.417 53.223 56.436 1.00 70.67 O
ATOM 13 C1' C B 700 8.810 55.190 56.598 1.00 68.70 C
ATOM 14 N1 C B 700 8.969 56.323 57.529 1.00 67.87 N
ATOM 15 C2 C B 700 9.473 56.071 58.811 1.00 67.36 C
ATOM 16 O2 C B 700 9.827 54.924 59.100 1.00 69.13 O
ATOM 17 N3 C B 700 9.567 57.085 59.698 1.00 66.57 N
ATOM 18 C4 C B 700 9.195 58.316 59.344 1.00 65.82 C
ATOM 19 N4 C B 700 9.292 59.282 60.258 1.00 63.83 N
ATOM 20 C5 C B 700 8.704 58.609 58.037 1.00 65.79 C
ATOM 21 C6 C B 700 8.611 57.594 57.169 1.00 66.88 C
ATOM 22 P U B 701 4.121 55.194 55.587 1.00 73.47 P
ATOM 23 OP1 U B 701 3.068 54.569 54.748 1.00 73.93 O
ATOM 24 OP2 U B 701 4.117 56.665 55.790 1.00 73.33 O
ATOM 25 O5' U B 701 4.109 54.513 57.024 1.00 73.64 O
TER
Atoms:
C4: (5.341,49.685,54.411)
N3: (5.035,48.914,55.512)
OP1: (3.068,54.569,54.748)
OP2: (4.117,56.665,55.790)
C2: (4.635,49.358,56.749)
C1': (4.132,51.296,58.173)
C3': (4.240,53.177,59.609)
O5': (4.109,54.513,57.024)
O4': (2.942,52.036,57.968)
C5': (2.909,54.447,57.813)
P: (4.121,55.194,55.587)
C4': (2.980,53.262,58.751)
C2': (5.145,52.269,58.780)
O2': (6.125,51.595,59.544)
N1: (4.542,50.738,56.873)
O4: (5.703,49.138,53.371)
O2: (4.379,48.586,57.660)
C6: (4.830,51.561,55.803)
C5: (5.213,51.093,54.613)
O3': (3.921,52.571,60.855)
N3: (5.035,48.914,55.512)
OP1: (3.068,54.569,54.748)
OP2: (4.117,56.665,55.790)
C2: (4.635,49.358,56.749)
C1': (4.132,51.296,58.173)
C3': (4.240,53.177,59.609)
O5': (4.109,54.513,57.024)
O4': (2.942,52.036,57.968)
C5': (2.909,54.447,57.813)
P: (4.121,55.194,55.587)
C4': (2.980,53.262,58.751)
C2': (5.145,52.269,58.780)
O2': (6.125,51.595,59.544)
N1: (4.542,50.738,56.873)
O4: (5.703,49.138,53.371)
O2: (4.379,48.586,57.660)
C6: (4.830,51.561,55.803)
C5: (5.213,51.093,54.613)
O3': (3.921,52.571,60.855)
C2: (9.473,56.071,58.811)
OP1: (6.153,58.694,51.969)
OP2: (6.779,60.173,53.971)
C4: (9.195,58.316,59.344)
O5': (7.301,57.739,53.986)
C3': (6.735,55.384,55.493)
C1': (8.810,55.190,56.598)
O4': (9.051,55.641,55.272)
C5': (7.736,56.494,53.405)
P: (7.086,59.027,53.075)
O2: (9.827,54.924,59.100)
C4': (7.858,55.429,54.469)
C2': (7.386,54.621,56.639)
O2': (7.417,53.223,56.436)
N1: (8.969,56.323,57.529)
N3: (9.567,57.085,59.698)
N4: (9.292,59.282,60.258)
C6: (8.611,57.594,57.169)
C5: (8.704,58.609,58.037)
O3': (5.553,54.765,54.994)
OP1: (6.153,58.694,51.969)
OP2: (6.779,60.173,53.971)
C4: (9.195,58.316,59.344)
O5': (7.301,57.739,53.986)
C3': (6.735,55.384,55.493)
C1': (8.810,55.190,56.598)
O4': (9.051,55.641,55.272)
C5': (7.736,56.494,53.405)
P: (7.086,59.027,53.075)
O2: (9.827,54.924,59.100)
C4': (7.858,55.429,54.469)
C2': (7.386,54.621,56.639)
O2': (7.417,53.223,56.436)
N1: (8.969,56.323,57.529)
N3: (9.567,57.085,59.698)
N4: (9.292,59.282,60.258)
C6: (8.611,57.594,57.169)
C5: (8.704,58.609,58.037)
O3': (5.553,54.765,54.994)
Image (generated by PyMOL):