Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5V:E22:E58
Extra
PDB:
ATOM 1 O3' A A 21 -4.157 11.151 108.478 1.00 79.60 O
ATOM 2 P A A 22 -2.957 12.022 107.859 1.00 77.34 P
ATOM 3 OP1 A A 22 -2.606 11.444 106.539 1.00 84.32 O
ATOM 4 OP2 A A 22 -1.912 12.153 108.903 1.00 81.50 O
ATOM 5 O5' A A 22 -3.603 13.460 107.634 1.00 76.44 O
ATOM 6 C5' A A 22 -4.720 13.625 106.770 1.00 74.26 C
ATOM 7 C4' A A 22 -5.353 14.978 106.985 1.00 75.28 C
ATOM 8 O4' A A 22 -5.825 15.072 108.354 1.00 73.91 O
ATOM 9 C3' A A 22 -4.434 16.178 106.833 1.00 76.36 C
ATOM 10 O3' A A 22 -4.291 16.550 105.466 1.00 78.90 O
ATOM 11 C2' A A 22 -5.174 17.241 107.634 1.00 80.01 C
ATOM 12 O2' A A 22 -6.246 17.827 106.922 1.00 72.95 O
ATOM 13 C1' A A 22 -5.714 16.413 108.803 1.00 77.17 C
ATOM 14 N9 A A 22 -4.817 16.437 109.956 1.00 75.45 N
ATOM 15 C8 A A 22 -4.002 15.434 110.419 1.00 73.64 C
ATOM 16 N7 A A 22 -3.301 15.769 111.474 1.00 72.66 N
ATOM 17 C5 A A 22 -3.683 17.079 111.724 1.00 73.75 C
ATOM 18 C6 A A 22 -3.301 18.001 112.710 1.00 73.19 C
ATOM 19 N6 A A 22 -2.414 17.733 113.667 1.00 73.14 N
ATOM 20 N1 A A 22 -3.872 19.226 112.680 1.00 72.02 N
ATOM 21 C2 A A 22 -4.763 19.493 111.718 1.00 71.70 C
ATOM 22 N3 A A 22 -5.203 18.709 110.737 1.00 71.81 N
ATOM 23 C4 A A 22 -4.617 17.502 110.798 1.00 72.72 C
ATOM 24 P A A 23 -2.926 17.240 104.969 1.00 78.90 P
ATOM 25 OP1 A A 23 -2.997 17.419 103.497 1.00 82.07 O
ATOM 26 OP2 A A 23 -1.789 16.494 105.563 1.00 80.10 O
ATOM 27 O5' A A 23 -2.967 18.681 105.636 1.00 76.00 O
TER
ATOM 1 O3' U B 57 2.365 7.692 118.083 1.00 64.66 O
ATOM 2 P A B 58 0.962 8.468 118.112 1.00 56.72 P
ATOM 3 OP1 A B 58 0.227 7.947 119.287 1.00 61.06 O
ATOM 4 OP2 A B 58 0.342 8.384 116.761 1.00 61.15 O
ATOM 5 O5' A B 58 1.357 9.980 118.405 1.00 57.13 O
ATOM 6 C5' A B 58 2.232 10.314 119.474 1.00 52.63 C
ATOM 7 C4' A B 58 2.385 11.810 119.555 1.00 54.84 C
ATOM 8 O4' A B 58 2.732 12.280 118.232 1.00 54.97 O
ATOM 9 C3' A B 58 1.123 12.580 119.922 1.00 55.93 C
ATOM 10 O3' A B 58 1.049 12.738 121.337 1.00 59.61 O
ATOM 11 C2' A B 58 1.356 13.925 119.248 1.00 58.03 C
ATOM 12 O2' A B 58 2.206 14.768 119.997 1.00 65.66 O
ATOM 13 C1' A B 58 2.076 13.504 117.969 1.00 59.16 C
ATOM 14 N9 A B 58 1.200 13.308 116.816 1.00 55.19 N
ATOM 15 C8 A B 58 0.845 12.123 116.224 1.00 54.35 C
ATOM 16 N7 A B 58 0.065 12.265 115.182 1.00 54.27 N
ATOM 17 C5 A B 58 -0.111 13.636 115.085 1.00 56.04 C
ATOM 18 C6 A B 58 -0.837 14.432 114.186 1.00 57.64 C
ATOM 19 N6 A B 58 -1.551 13.936 113.172 1.00 53.12 N
ATOM 20 N1 A B 58 -0.805 15.771 114.367 1.00 60.73 N
ATOM 21 C2 A B 58 -0.092 16.264 115.388 1.00 61.02 C
ATOM 22 N3 A B 58 0.630 15.617 116.301 1.00 59.94 N
ATOM 23 C4 A B 58 0.578 14.291 116.090 1.00 55.70 C
ATOM 24 P U B 59 -0.381 12.775 122.072 1.00 57.36 P
ATOM 25 OP1 U B 59 -0.116 13.208 123.467 1.00 69.75 O
ATOM 26 OP2 U B 59 -1.067 11.481 121.825 1.00 48.32 O
ATOM 27 O5' U B 59 -1.163 13.961 121.342 1.00 59.07 O
TER
ATOM 2 P A A 22 -2.957 12.022 107.859 1.00 77.34 P
ATOM 3 OP1 A A 22 -2.606 11.444 106.539 1.00 84.32 O
ATOM 4 OP2 A A 22 -1.912 12.153 108.903 1.00 81.50 O
ATOM 5 O5' A A 22 -3.603 13.460 107.634 1.00 76.44 O
ATOM 6 C5' A A 22 -4.720 13.625 106.770 1.00 74.26 C
ATOM 7 C4' A A 22 -5.353 14.978 106.985 1.00 75.28 C
ATOM 8 O4' A A 22 -5.825 15.072 108.354 1.00 73.91 O
ATOM 9 C3' A A 22 -4.434 16.178 106.833 1.00 76.36 C
ATOM 10 O3' A A 22 -4.291 16.550 105.466 1.00 78.90 O
ATOM 11 C2' A A 22 -5.174 17.241 107.634 1.00 80.01 C
ATOM 12 O2' A A 22 -6.246 17.827 106.922 1.00 72.95 O
ATOM 13 C1' A A 22 -5.714 16.413 108.803 1.00 77.17 C
ATOM 14 N9 A A 22 -4.817 16.437 109.956 1.00 75.45 N
ATOM 15 C8 A A 22 -4.002 15.434 110.419 1.00 73.64 C
ATOM 16 N7 A A 22 -3.301 15.769 111.474 1.00 72.66 N
ATOM 17 C5 A A 22 -3.683 17.079 111.724 1.00 73.75 C
ATOM 18 C6 A A 22 -3.301 18.001 112.710 1.00 73.19 C
ATOM 19 N6 A A 22 -2.414 17.733 113.667 1.00 73.14 N
ATOM 20 N1 A A 22 -3.872 19.226 112.680 1.00 72.02 N
ATOM 21 C2 A A 22 -4.763 19.493 111.718 1.00 71.70 C
ATOM 22 N3 A A 22 -5.203 18.709 110.737 1.00 71.81 N
ATOM 23 C4 A A 22 -4.617 17.502 110.798 1.00 72.72 C
ATOM 24 P A A 23 -2.926 17.240 104.969 1.00 78.90 P
ATOM 25 OP1 A A 23 -2.997 17.419 103.497 1.00 82.07 O
ATOM 26 OP2 A A 23 -1.789 16.494 105.563 1.00 80.10 O
ATOM 27 O5' A A 23 -2.967 18.681 105.636 1.00 76.00 O
TER
ATOM 1 O3' U B 57 2.365 7.692 118.083 1.00 64.66 O
ATOM 2 P A B 58 0.962 8.468 118.112 1.00 56.72 P
ATOM 3 OP1 A B 58 0.227 7.947 119.287 1.00 61.06 O
ATOM 4 OP2 A B 58 0.342 8.384 116.761 1.00 61.15 O
ATOM 5 O5' A B 58 1.357 9.980 118.405 1.00 57.13 O
ATOM 6 C5' A B 58 2.232 10.314 119.474 1.00 52.63 C
ATOM 7 C4' A B 58 2.385 11.810 119.555 1.00 54.84 C
ATOM 8 O4' A B 58 2.732 12.280 118.232 1.00 54.97 O
ATOM 9 C3' A B 58 1.123 12.580 119.922 1.00 55.93 C
ATOM 10 O3' A B 58 1.049 12.738 121.337 1.00 59.61 O
ATOM 11 C2' A B 58 1.356 13.925 119.248 1.00 58.03 C
ATOM 12 O2' A B 58 2.206 14.768 119.997 1.00 65.66 O
ATOM 13 C1' A B 58 2.076 13.504 117.969 1.00 59.16 C
ATOM 14 N9 A B 58 1.200 13.308 116.816 1.00 55.19 N
ATOM 15 C8 A B 58 0.845 12.123 116.224 1.00 54.35 C
ATOM 16 N7 A B 58 0.065 12.265 115.182 1.00 54.27 N
ATOM 17 C5 A B 58 -0.111 13.636 115.085 1.00 56.04 C
ATOM 18 C6 A B 58 -0.837 14.432 114.186 1.00 57.64 C
ATOM 19 N6 A B 58 -1.551 13.936 113.172 1.00 53.12 N
ATOM 20 N1 A B 58 -0.805 15.771 114.367 1.00 60.73 N
ATOM 21 C2 A B 58 -0.092 16.264 115.388 1.00 61.02 C
ATOM 22 N3 A B 58 0.630 15.617 116.301 1.00 59.94 N
ATOM 23 C4 A B 58 0.578 14.291 116.090 1.00 55.70 C
ATOM 24 P U B 59 -0.381 12.775 122.072 1.00 57.36 P
ATOM 25 OP1 U B 59 -0.116 13.208 123.467 1.00 69.75 O
ATOM 26 OP2 U B 59 -1.067 11.481 121.825 1.00 48.32 O
ATOM 27 O5' U B 59 -1.163 13.961 121.342 1.00 59.07 O
TER
Atoms:
OP1: (-2.606,11.444,106.539)
OP2: (-1.912,12.153,108.903)
C3': (-4.434,16.178,106.833)
C1': (-5.714,16.413,108.803)
C5': (-4.720,13.625,106.770)
O4': (-5.825,15.072,108.354)
C8: (-4.002,15.434,110.419)
O2': (-6.246,17.827,106.922)
C6: (-3.301,18.001,112.710)
C5: (-3.683,17.079,111.724)
C4: (-4.617,17.502,110.798)
P: (-2.957,12.022,107.859)
C4': (-5.353,14.978,106.985)
C2': (-5.174,17.241,107.634)
C2: (-4.763,19.493,111.718)
N1: (-3.872,19.226,112.680)
N3: (-5.203,18.709,110.737)
N6: (-2.414,17.733,113.667)
N7: (-3.301,15.769,111.474)
N9: (-4.817,16.437,109.956)
O5': (-3.603,13.460,107.634)
O3': (-4.291,16.550,105.466)
OP2: (-1.912,12.153,108.903)
C3': (-4.434,16.178,106.833)
C1': (-5.714,16.413,108.803)
C5': (-4.720,13.625,106.770)
O4': (-5.825,15.072,108.354)
C8: (-4.002,15.434,110.419)
O2': (-6.246,17.827,106.922)
C6: (-3.301,18.001,112.710)
C5: (-3.683,17.079,111.724)
C4: (-4.617,17.502,110.798)
P: (-2.957,12.022,107.859)
C4': (-5.353,14.978,106.985)
C2': (-5.174,17.241,107.634)
C2: (-4.763,19.493,111.718)
N1: (-3.872,19.226,112.680)
N3: (-5.203,18.709,110.737)
N6: (-2.414,17.733,113.667)
N7: (-3.301,15.769,111.474)
N9: (-4.817,16.437,109.956)
O5': (-3.603,13.460,107.634)
O3': (-4.291,16.550,105.466)
OP1: (0.227,7.947,119.287)
OP2: (0.342,8.384,116.761)
C3': (1.123,12.580,119.922)
C1': (2.076,13.504,117.969)
C5': (2.232,10.314,119.474)
O4': (2.732,12.280,118.232)
C8: (0.845,12.123,116.224)
O2': (2.206,14.768,119.997)
C6: (-0.837,14.432,114.186)
C5: (-0.111,13.636,115.085)
C4: (0.578,14.291,116.090)
P: (0.962,8.468,118.112)
C4': (2.385,11.810,119.555)
C2': (1.356,13.925,119.248)
C2: (-0.092,16.264,115.388)
N1: (-0.805,15.771,114.367)
N3: (0.630,15.617,116.301)
N6: (-1.551,13.936,113.172)
N7: (0.065,12.265,115.182)
N9: (1.200,13.308,116.816)
O5': (1.357,9.980,118.405)
O3': (1.049,12.738,121.337)
OP2: (0.342,8.384,116.761)
C3': (1.123,12.580,119.922)
C1': (2.076,13.504,117.969)
C5': (2.232,10.314,119.474)
O4': (2.732,12.280,118.232)
C8: (0.845,12.123,116.224)
O2': (2.206,14.768,119.997)
C6: (-0.837,14.432,114.186)
C5: (-0.111,13.636,115.085)
C4: (0.578,14.291,116.090)
P: (0.962,8.468,118.112)
C4': (2.385,11.810,119.555)
C2': (1.356,13.925,119.248)
C2: (-0.092,16.264,115.388)
N1: (-0.805,15.771,114.367)
N3: (0.630,15.617,116.301)
N6: (-1.551,13.936,113.172)
N7: (0.065,12.265,115.182)
N9: (1.200,13.308,116.816)
O5': (1.357,9.980,118.405)
O3': (1.049,12.738,121.337)
Image (generated by PyMOL):