Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5P:E22:E58
Extra
PDB:
ATOM 1 O3' A A 21 -2.338 11.526 109.550 1.00100.27 O
ATOM 2 P A A 22 -1.181 12.496 109.009 1.00 99.62 P
ATOM 3 OP1 A A 22 -0.782 12.021 107.661 1.00107.77 O
ATOM 4 OP2 A A 22 -0.160 12.605 110.080 1.00110.04 O
ATOM 5 O5' A A 22 -1.908 13.904 108.865 1.00 90.08 O
ATOM 6 C5' A A 22 -3.026 14.051 107.997 1.00 86.86 C
ATOM 7 C4' A A 22 -3.646 15.415 108.166 1.00 87.22 C
ATOM 8 O4' A A 22 -4.158 15.535 109.518 1.00 92.08 O
ATOM 9 C3' A A 22 -2.699 16.596 108.014 1.00 90.12 C
ATOM 10 O3' A A 22 -2.544 16.975 106.651 1.00 76.03 O
ATOM 11 C2' A A 22 -3.412 17.681 108.809 1.00 89.67 C
ATOM 12 O2' A A 22 -4.434 18.309 108.068 1.00 99.03 O
ATOM 13 C1' A A 22 -4.007 16.872 109.965 1.00 94.40 C
ATOM 14 N9 A A 22 -3.124 16.864 111.127 1.00 90.98 N
ATOM 15 C8 A A 22 -2.212 15.907 111.496 1.00 90.73 C
ATOM 16 N7 A A 22 -1.539 16.210 112.578 1.00 89.69 N
ATOM 17 C5 A A 22 -2.046 17.446 112.950 1.00 91.24 C
ATOM 18 C6 A A 22 -1.746 18.306 114.013 1.00 91.21 C
ATOM 19 N6 A A 22 -0.820 18.042 114.935 1.00 90.29 N
ATOM 20 N1 A A 22 -2.437 19.464 114.099 1.00 91.74 N
ATOM 21 C2 A A 22 -3.363 19.727 113.171 1.00 93.39 C
ATOM 22 N3 A A 22 -3.735 18.997 112.123 1.00 93.36 N
ATOM 23 C4 A A 22 -3.029 17.856 112.069 1.00 91.83 C
ATOM 24 P A A 23 -1.217 17.754 106.189 1.00 92.53 P
ATOM 25 OP1 A A 23 -1.307 18.022 104.734 1.00 95.87 O
ATOM 26 OP2 A A 23 -0.041 17.030 106.729 1.00 80.51 O
ATOM 27 O5' A A 23 -1.323 19.153 106.937 1.00 94.58 O
TER
ATOM 1 O3' U B 57 4.088 7.862 118.979 1.00 69.67 O
ATOM 2 P A B 58 2.710 8.664 119.141 1.00 78.05 P
ATOM 3 OP1 A B 58 2.034 8.181 120.372 1.00 63.67 O
ATOM 4 OP2 A B 58 1.984 8.624 117.843 1.00 69.41 O
ATOM 5 O5' A B 58 3.193 10.150 119.414 1.00 72.26 O
ATOM 6 C5' A B 58 4.183 10.423 120.391 1.00 61.56 C
ATOM 7 C4' A B 58 4.338 11.910 120.536 1.00 73.50 C
ATOM 8 O4' A B 58 4.641 12.441 119.221 1.00 85.53 O
ATOM 9 C3' A B 58 3.078 12.646 120.948 1.00 72.40 C
ATOM 10 O3' A B 58 2.989 12.747 122.356 1.00 78.80 O
ATOM 11 C2' A B 58 3.304 14.024 120.362 1.00 69.75 C
ATOM 12 O2' A B 58 4.184 14.765 121.167 1.00 75.20 O
ATOM 13 C1' A B 58 3.984 13.679 119.041 1.00 74.25 C
ATOM 14 N9 A B 58 3.053 13.542 117.925 1.00 66.65 N
ATOM 15 C8 A B 58 2.650 12.386 117.314 1.00 65.99 C
ATOM 16 N7 A B 58 1.812 12.575 116.323 1.00 63.71 N
ATOM 17 C5 A B 58 1.655 13.948 116.281 1.00 64.05 C
ATOM 18 C6 A B 58 0.892 14.779 115.457 1.00 68.32 C
ATOM 19 N6 A B 58 0.115 14.326 114.473 1.00 68.51 N
ATOM 20 N1 A B 58 0.950 16.111 115.682 1.00 71.65 N
ATOM 21 C2 A B 58 1.726 16.560 116.677 1.00 74.17 C
ATOM 22 N3 A B 58 2.491 15.874 117.522 1.00 72.83 N
ATOM 23 C4 A B 58 2.409 14.558 117.266 1.00 67.92 C
ATOM 24 P U B 59 1.548 12.802 123.056 1.00 78.26 P
ATOM 25 OP1 U B 59 1.808 13.235 124.447 1.00 78.29 O
ATOM 26 OP2 U B 59 0.813 11.529 122.801 1.00 70.82 O
ATOM 27 O5' U B 59 0.803 14.053 122.413 1.00 73.02 O
TER
ATOM 2 P A A 22 -1.181 12.496 109.009 1.00 99.62 P
ATOM 3 OP1 A A 22 -0.782 12.021 107.661 1.00107.77 O
ATOM 4 OP2 A A 22 -0.160 12.605 110.080 1.00110.04 O
ATOM 5 O5' A A 22 -1.908 13.904 108.865 1.00 90.08 O
ATOM 6 C5' A A 22 -3.026 14.051 107.997 1.00 86.86 C
ATOM 7 C4' A A 22 -3.646 15.415 108.166 1.00 87.22 C
ATOM 8 O4' A A 22 -4.158 15.535 109.518 1.00 92.08 O
ATOM 9 C3' A A 22 -2.699 16.596 108.014 1.00 90.12 C
ATOM 10 O3' A A 22 -2.544 16.975 106.651 1.00 76.03 O
ATOM 11 C2' A A 22 -3.412 17.681 108.809 1.00 89.67 C
ATOM 12 O2' A A 22 -4.434 18.309 108.068 1.00 99.03 O
ATOM 13 C1' A A 22 -4.007 16.872 109.965 1.00 94.40 C
ATOM 14 N9 A A 22 -3.124 16.864 111.127 1.00 90.98 N
ATOM 15 C8 A A 22 -2.212 15.907 111.496 1.00 90.73 C
ATOM 16 N7 A A 22 -1.539 16.210 112.578 1.00 89.69 N
ATOM 17 C5 A A 22 -2.046 17.446 112.950 1.00 91.24 C
ATOM 18 C6 A A 22 -1.746 18.306 114.013 1.00 91.21 C
ATOM 19 N6 A A 22 -0.820 18.042 114.935 1.00 90.29 N
ATOM 20 N1 A A 22 -2.437 19.464 114.099 1.00 91.74 N
ATOM 21 C2 A A 22 -3.363 19.727 113.171 1.00 93.39 C
ATOM 22 N3 A A 22 -3.735 18.997 112.123 1.00 93.36 N
ATOM 23 C4 A A 22 -3.029 17.856 112.069 1.00 91.83 C
ATOM 24 P A A 23 -1.217 17.754 106.189 1.00 92.53 P
ATOM 25 OP1 A A 23 -1.307 18.022 104.734 1.00 95.87 O
ATOM 26 OP2 A A 23 -0.041 17.030 106.729 1.00 80.51 O
ATOM 27 O5' A A 23 -1.323 19.153 106.937 1.00 94.58 O
TER
ATOM 1 O3' U B 57 4.088 7.862 118.979 1.00 69.67 O
ATOM 2 P A B 58 2.710 8.664 119.141 1.00 78.05 P
ATOM 3 OP1 A B 58 2.034 8.181 120.372 1.00 63.67 O
ATOM 4 OP2 A B 58 1.984 8.624 117.843 1.00 69.41 O
ATOM 5 O5' A B 58 3.193 10.150 119.414 1.00 72.26 O
ATOM 6 C5' A B 58 4.183 10.423 120.391 1.00 61.56 C
ATOM 7 C4' A B 58 4.338 11.910 120.536 1.00 73.50 C
ATOM 8 O4' A B 58 4.641 12.441 119.221 1.00 85.53 O
ATOM 9 C3' A B 58 3.078 12.646 120.948 1.00 72.40 C
ATOM 10 O3' A B 58 2.989 12.747 122.356 1.00 78.80 O
ATOM 11 C2' A B 58 3.304 14.024 120.362 1.00 69.75 C
ATOM 12 O2' A B 58 4.184 14.765 121.167 1.00 75.20 O
ATOM 13 C1' A B 58 3.984 13.679 119.041 1.00 74.25 C
ATOM 14 N9 A B 58 3.053 13.542 117.925 1.00 66.65 N
ATOM 15 C8 A B 58 2.650 12.386 117.314 1.00 65.99 C
ATOM 16 N7 A B 58 1.812 12.575 116.323 1.00 63.71 N
ATOM 17 C5 A B 58 1.655 13.948 116.281 1.00 64.05 C
ATOM 18 C6 A B 58 0.892 14.779 115.457 1.00 68.32 C
ATOM 19 N6 A B 58 0.115 14.326 114.473 1.00 68.51 N
ATOM 20 N1 A B 58 0.950 16.111 115.682 1.00 71.65 N
ATOM 21 C2 A B 58 1.726 16.560 116.677 1.00 74.17 C
ATOM 22 N3 A B 58 2.491 15.874 117.522 1.00 72.83 N
ATOM 23 C4 A B 58 2.409 14.558 117.266 1.00 67.92 C
ATOM 24 P U B 59 1.548 12.802 123.056 1.00 78.26 P
ATOM 25 OP1 U B 59 1.808 13.235 124.447 1.00 78.29 O
ATOM 26 OP2 U B 59 0.813 11.529 122.801 1.00 70.82 O
ATOM 27 O5' U B 59 0.803 14.053 122.413 1.00 73.02 O
TER
Atoms:
OP1: (-0.782,12.021,107.661)
OP2: (-0.160,12.605,110.080)
C3': (-2.699,16.596,108.014)
C1': (-4.007,16.872,109.965)
C5': (-3.026,14.051,107.997)
O4': (-4.158,15.535,109.518)
C8: (-2.212,15.907,111.496)
O2': (-4.434,18.309,108.068)
C6: (-1.746,18.306,114.013)
C5: (-2.046,17.446,112.950)
C4: (-3.029,17.856,112.069)
P: (-1.181,12.496,109.009)
C4': (-3.646,15.415,108.166)
C2': (-3.412,17.681,108.809)
C2: (-3.363,19.727,113.171)
N1: (-2.437,19.464,114.099)
N3: (-3.735,18.997,112.123)
N6: (-0.820,18.042,114.935)
N7: (-1.539,16.210,112.578)
N9: (-3.124,16.864,111.127)
O5': (-1.908,13.904,108.865)
O3': (-2.544,16.975,106.651)
OP2: (-0.160,12.605,110.080)
C3': (-2.699,16.596,108.014)
C1': (-4.007,16.872,109.965)
C5': (-3.026,14.051,107.997)
O4': (-4.158,15.535,109.518)
C8: (-2.212,15.907,111.496)
O2': (-4.434,18.309,108.068)
C6: (-1.746,18.306,114.013)
C5: (-2.046,17.446,112.950)
C4: (-3.029,17.856,112.069)
P: (-1.181,12.496,109.009)
C4': (-3.646,15.415,108.166)
C2': (-3.412,17.681,108.809)
C2: (-3.363,19.727,113.171)
N1: (-2.437,19.464,114.099)
N3: (-3.735,18.997,112.123)
N6: (-0.820,18.042,114.935)
N7: (-1.539,16.210,112.578)
N9: (-3.124,16.864,111.127)
O5': (-1.908,13.904,108.865)
O3': (-2.544,16.975,106.651)
OP1: (2.034,8.181,120.372)
OP2: (1.984,8.624,117.843)
C3': (3.078,12.646,120.948)
C1': (3.984,13.679,119.041)
C5': (4.183,10.423,120.391)
O4': (4.641,12.441,119.221)
C8: (2.650,12.386,117.314)
O2': (4.184,14.765,121.167)
C6: (0.892,14.779,115.457)
C5: (1.655,13.948,116.281)
C4: (2.409,14.558,117.266)
P: (2.710,8.664,119.141)
C4': (4.338,11.910,120.536)
C2': (3.304,14.024,120.362)
C2: (1.726,16.560,116.677)
N1: (0.950,16.111,115.682)
N3: (2.491,15.874,117.522)
N6: (0.115,14.326,114.473)
N7: (1.812,12.575,116.323)
N9: (3.053,13.542,117.925)
O5': (3.193,10.150,119.414)
O3': (2.989,12.747,122.356)
OP2: (1.984,8.624,117.843)
C3': (3.078,12.646,120.948)
C1': (3.984,13.679,119.041)
C5': (4.183,10.423,120.391)
O4': (4.641,12.441,119.221)
C8: (2.650,12.386,117.314)
O2': (4.184,14.765,121.167)
C6: (0.892,14.779,115.457)
C5: (1.655,13.948,116.281)
C4: (2.409,14.558,117.266)
P: (2.710,8.664,119.141)
C4': (4.338,11.910,120.536)
C2': (3.304,14.024,120.362)
C2: (1.726,16.560,116.677)
N1: (0.950,16.111,115.682)
N3: (2.491,15.874,117.522)
N6: (0.115,14.326,114.473)
N7: (1.812,12.575,116.323)
N9: (3.053,13.542,117.925)
O5': (3.193,10.150,119.414)
O3': (2.989,12.747,122.356)
Image (generated by PyMOL):