Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:A20:A49
Extra
PDB:
ATOM 1 O3' U A 19 0.966 -1.270 -36.995 1.00 54.72 O
ATOM 2 P A A 20 -0.403 -0.523 -36.606 1.00 50.62 P
ATOM 3 OP1 A A 20 -1.463 -1.558 -36.543 1.00 54.25 O
ATOM 4 OP2 A A 20 -0.568 0.609 -37.551 1.00 50.82 O
ATOM 5 O5' A A 20 -0.101 0.031 -35.146 1.00 47.83 O
ATOM 6 C5' A A 20 -0.584 -0.645 -33.991 1.00 47.13 C
ATOM 7 C4' A A 20 -0.499 0.227 -32.764 1.00 50.50 C
ATOM 8 O4' A A 20 0.897 0.526 -32.495 1.00 53.44 O
ATOM 9 C3' A A 20 -1.206 1.572 -32.880 1.00 49.07 C
ATOM 10 O3' A A 20 -1.699 1.962 -31.598 1.00 48.71 O
ATOM 11 C2' A A 20 -0.081 2.509 -33.309 1.00 46.25 C
ATOM 12 O2' A A 20 -0.289 3.868 -32.982 1.00 49.20 O
ATOM 13 C1' A A 20 1.119 1.923 -32.564 1.00 44.80 C
ATOM 14 N9 A A 20 2.404 2.140 -33.237 1.00 42.96 N
ATOM 15 C8 A A 20 2.900 1.461 -34.325 1.00 41.38 C
ATOM 16 N7 A A 20 4.087 1.863 -34.711 1.00 45.73 N
ATOM 17 C5 A A 20 4.401 2.877 -33.814 1.00 40.94 C
ATOM 18 C6 A A 20 5.524 3.714 -33.677 1.00 38.13 C
ATOM 19 N6 A A 20 6.595 3.670 -34.474 1.00 38.94 N
ATOM 20 N1 A A 20 5.515 4.618 -32.674 1.00 40.38 N
ATOM 21 C2 A A 20 4.448 4.674 -31.867 1.00 40.43 C
ATOM 22 N3 A A 20 3.337 3.944 -31.894 1.00 42.57 N
ATOM 23 C4 A A 20 3.375 3.054 -32.900 1.00 41.94 C
ATOM 24 P U A 21 -3.273 2.209 -31.382 1.00 60.82 P
ATOM 25 OP1 U A 21 -3.855 2.502 -32.715 1.00 58.24 O
ATOM 26 OP2 U A 21 -3.413 3.220 -30.306 1.00 55.62 O
ATOM 27 O5' U A 21 -3.792 0.794 -30.868 1.00 54.11 O
TER
ATOM 1 O3' U B 48 4.764 1.902 -44.378 1.00 67.56 O
ATOM 2 P A B 49 5.386 0.413 -44.363 1.00 74.52 P
ATOM 3 OP1 A B 49 4.803 -0.309 -45.519 1.00 71.51 O
ATOM 4 OP2 A B 49 5.176 -0.143 -43.005 1.00 69.82 O
ATOM 5 O5' A B 49 6.940 0.663 -44.614 1.00 64.06 O
ATOM 6 C5' A B 49 7.829 -0.431 -44.792 1.00 62.77 C
ATOM 7 C4' A B 49 9.007 -0.351 -43.853 1.00 66.12 C
ATOM 8 O4' A B 49 8.692 0.528 -42.744 1.00 66.72 O
ATOM 9 C3' A B 49 9.419 -1.657 -43.189 1.00 63.06 C
ATOM 10 O3' A B 49 10.231 -2.466 -44.020 1.00 64.02 O
ATOM 11 C2' A B 49 10.121 -1.186 -41.922 1.00 59.27 C
ATOM 12 O2' A B 49 11.451 -0.779 -42.207 1.00 59.24 O
ATOM 13 C1' A B 49 9.302 0.053 -41.561 1.00 64.66 C
ATOM 14 N9 A B 49 8.242 -0.247 -40.578 1.00 56.15 N
ATOM 15 C8 A B 49 7.310 -1.254 -40.621 1.00 50.96 C
ATOM 16 N7 A B 49 6.490 -1.258 -39.597 1.00 47.89 N
ATOM 17 C5 A B 49 6.909 -0.179 -38.829 1.00 47.43 C
ATOM 18 C6 A B 49 6.449 0.357 -37.613 1.00 44.34 C
ATOM 19 N6 A B 49 5.423 -0.141 -36.919 1.00 41.27 N
ATOM 20 N1 A B 49 7.092 1.436 -37.118 1.00 42.30 N
ATOM 21 C2 A B 49 8.123 1.938 -37.808 1.00 46.78 C
ATOM 22 N3 A B 49 8.647 1.526 -38.960 1.00 52.22 N
ATOM 23 C4 A B 49 7.987 0.451 -39.423 1.00 51.64 C
ATOM 24 P A B 50 10.769 -3.883 -43.487 1.00 68.27 P
ATOM 25 OP1 A B 50 11.186 -4.667 -44.675 1.00 67.46 O
ATOM 26 OP2 A B 50 9.721 -4.440 -42.597 1.00 62.29 O
ATOM 27 O5' A B 50 12.049 -3.476 -42.631 1.00 57.11 O
TER
ATOM 2 P A A 20 -0.403 -0.523 -36.606 1.00 50.62 P
ATOM 3 OP1 A A 20 -1.463 -1.558 -36.543 1.00 54.25 O
ATOM 4 OP2 A A 20 -0.568 0.609 -37.551 1.00 50.82 O
ATOM 5 O5' A A 20 -0.101 0.031 -35.146 1.00 47.83 O
ATOM 6 C5' A A 20 -0.584 -0.645 -33.991 1.00 47.13 C
ATOM 7 C4' A A 20 -0.499 0.227 -32.764 1.00 50.50 C
ATOM 8 O4' A A 20 0.897 0.526 -32.495 1.00 53.44 O
ATOM 9 C3' A A 20 -1.206 1.572 -32.880 1.00 49.07 C
ATOM 10 O3' A A 20 -1.699 1.962 -31.598 1.00 48.71 O
ATOM 11 C2' A A 20 -0.081 2.509 -33.309 1.00 46.25 C
ATOM 12 O2' A A 20 -0.289 3.868 -32.982 1.00 49.20 O
ATOM 13 C1' A A 20 1.119 1.923 -32.564 1.00 44.80 C
ATOM 14 N9 A A 20 2.404 2.140 -33.237 1.00 42.96 N
ATOM 15 C8 A A 20 2.900 1.461 -34.325 1.00 41.38 C
ATOM 16 N7 A A 20 4.087 1.863 -34.711 1.00 45.73 N
ATOM 17 C5 A A 20 4.401 2.877 -33.814 1.00 40.94 C
ATOM 18 C6 A A 20 5.524 3.714 -33.677 1.00 38.13 C
ATOM 19 N6 A A 20 6.595 3.670 -34.474 1.00 38.94 N
ATOM 20 N1 A A 20 5.515 4.618 -32.674 1.00 40.38 N
ATOM 21 C2 A A 20 4.448 4.674 -31.867 1.00 40.43 C
ATOM 22 N3 A A 20 3.337 3.944 -31.894 1.00 42.57 N
ATOM 23 C4 A A 20 3.375 3.054 -32.900 1.00 41.94 C
ATOM 24 P U A 21 -3.273 2.209 -31.382 1.00 60.82 P
ATOM 25 OP1 U A 21 -3.855 2.502 -32.715 1.00 58.24 O
ATOM 26 OP2 U A 21 -3.413 3.220 -30.306 1.00 55.62 O
ATOM 27 O5' U A 21 -3.792 0.794 -30.868 1.00 54.11 O
TER
ATOM 1 O3' U B 48 4.764 1.902 -44.378 1.00 67.56 O
ATOM 2 P A B 49 5.386 0.413 -44.363 1.00 74.52 P
ATOM 3 OP1 A B 49 4.803 -0.309 -45.519 1.00 71.51 O
ATOM 4 OP2 A B 49 5.176 -0.143 -43.005 1.00 69.82 O
ATOM 5 O5' A B 49 6.940 0.663 -44.614 1.00 64.06 O
ATOM 6 C5' A B 49 7.829 -0.431 -44.792 1.00 62.77 C
ATOM 7 C4' A B 49 9.007 -0.351 -43.853 1.00 66.12 C
ATOM 8 O4' A B 49 8.692 0.528 -42.744 1.00 66.72 O
ATOM 9 C3' A B 49 9.419 -1.657 -43.189 1.00 63.06 C
ATOM 10 O3' A B 49 10.231 -2.466 -44.020 1.00 64.02 O
ATOM 11 C2' A B 49 10.121 -1.186 -41.922 1.00 59.27 C
ATOM 12 O2' A B 49 11.451 -0.779 -42.207 1.00 59.24 O
ATOM 13 C1' A B 49 9.302 0.053 -41.561 1.00 64.66 C
ATOM 14 N9 A B 49 8.242 -0.247 -40.578 1.00 56.15 N
ATOM 15 C8 A B 49 7.310 -1.254 -40.621 1.00 50.96 C
ATOM 16 N7 A B 49 6.490 -1.258 -39.597 1.00 47.89 N
ATOM 17 C5 A B 49 6.909 -0.179 -38.829 1.00 47.43 C
ATOM 18 C6 A B 49 6.449 0.357 -37.613 1.00 44.34 C
ATOM 19 N6 A B 49 5.423 -0.141 -36.919 1.00 41.27 N
ATOM 20 N1 A B 49 7.092 1.436 -37.118 1.00 42.30 N
ATOM 21 C2 A B 49 8.123 1.938 -37.808 1.00 46.78 C
ATOM 22 N3 A B 49 8.647 1.526 -38.960 1.00 52.22 N
ATOM 23 C4 A B 49 7.987 0.451 -39.423 1.00 51.64 C
ATOM 24 P A B 50 10.769 -3.883 -43.487 1.00 68.27 P
ATOM 25 OP1 A B 50 11.186 -4.667 -44.675 1.00 67.46 O
ATOM 26 OP2 A B 50 9.721 -4.440 -42.597 1.00 62.29 O
ATOM 27 O5' A B 50 12.049 -3.476 -42.631 1.00 57.11 O
TER
Atoms:
OP1: (-1.463,-1.558,-36.543)
OP2: (-0.568,0.609,-37.551)
C3': (-1.206,1.572,-32.880)
C1': (1.119,1.923,-32.564)
C5': (-0.584,-0.645,-33.991)
O4': (0.897,0.526,-32.495)
C8: (2.900,1.461,-34.325)
O2': (-0.289,3.868,-32.982)
C6: (5.524,3.714,-33.677)
C5: (4.401,2.877,-33.814)
C4: (3.375,3.054,-32.900)
P: (-0.403,-0.523,-36.606)
C4': (-0.499,0.227,-32.764)
C2': (-0.081,2.509,-33.309)
C2: (4.448,4.674,-31.867)
N1: (5.515,4.618,-32.674)
N3: (3.337,3.944,-31.894)
N6: (6.595,3.670,-34.474)
N7: (4.087,1.863,-34.711)
N9: (2.404,2.140,-33.237)
O5': (-0.101,0.031,-35.146)
O3': (-1.699,1.962,-31.598)
OP2: (-0.568,0.609,-37.551)
C3': (-1.206,1.572,-32.880)
C1': (1.119,1.923,-32.564)
C5': (-0.584,-0.645,-33.991)
O4': (0.897,0.526,-32.495)
C8: (2.900,1.461,-34.325)
O2': (-0.289,3.868,-32.982)
C6: (5.524,3.714,-33.677)
C5: (4.401,2.877,-33.814)
C4: (3.375,3.054,-32.900)
P: (-0.403,-0.523,-36.606)
C4': (-0.499,0.227,-32.764)
C2': (-0.081,2.509,-33.309)
C2: (4.448,4.674,-31.867)
N1: (5.515,4.618,-32.674)
N3: (3.337,3.944,-31.894)
N6: (6.595,3.670,-34.474)
N7: (4.087,1.863,-34.711)
N9: (2.404,2.140,-33.237)
O5': (-0.101,0.031,-35.146)
O3': (-1.699,1.962,-31.598)
OP1: (4.803,-0.309,-45.519)
OP2: (5.176,-0.143,-43.005)
C3': (9.419,-1.657,-43.189)
C1': (9.302,0.053,-41.561)
C5': (7.829,-0.431,-44.792)
O4': (8.692,0.528,-42.744)
C8: (7.310,-1.254,-40.621)
O2': (11.451,-0.779,-42.207)
C6: (6.449,0.357,-37.613)
C5: (6.909,-0.179,-38.829)
C4: (7.987,0.451,-39.423)
P: (5.386,0.413,-44.363)
C4': (9.007,-0.351,-43.853)
C2': (10.121,-1.186,-41.922)
C2: (8.123,1.938,-37.808)
N1: (7.092,1.436,-37.118)
N3: (8.647,1.526,-38.960)
N6: (5.423,-0.141,-36.919)
N7: (6.490,-1.258,-39.597)
N9: (8.242,-0.247,-40.578)
O5': (6.940,0.663,-44.614)
O3': (10.231,-2.466,-44.020)
OP2: (5.176,-0.143,-43.005)
C3': (9.419,-1.657,-43.189)
C1': (9.302,0.053,-41.561)
C5': (7.829,-0.431,-44.792)
O4': (8.692,0.528,-42.744)
C8: (7.310,-1.254,-40.621)
O2': (11.451,-0.779,-42.207)
C6: (6.449,0.357,-37.613)
C5: (6.909,-0.179,-38.829)
C4: (7.987,0.451,-39.423)
P: (5.386,0.413,-44.363)
C4': (9.007,-0.351,-43.853)
C2': (10.121,-1.186,-41.922)
C2: (8.123,1.938,-37.808)
N1: (7.092,1.436,-37.118)
N3: (8.647,1.526,-38.960)
N6: (5.423,-0.141,-36.919)
N7: (6.490,-1.258,-39.597)
N9: (8.242,-0.247,-40.578)
O5': (6.940,0.663,-44.614)
O3': (10.231,-2.466,-44.020)
Image (generated by PyMOL):