Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12873:12872
Extra
PDB:
ATOM 1 O3' C A2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U A2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U A2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U A2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U A2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U A2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U A2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U A2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U A2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U A2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U A2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U A2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U A2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U A2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U A2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U A2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U A2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U A2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U A2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U A2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U A2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A A2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A A2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A A2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A A2874 26.891 15.766 1.987 1.00 51.91 O
TER
ATOM 1 O3' U B2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 2 P C B2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C B2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C B2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C B2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C B2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C B2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C B2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C B2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C B2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C B2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C B2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C B2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C B2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C B2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C B2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C B2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C B2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C B2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C B2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
TER
ATOM 2 P U A2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U A2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U A2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U A2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U A2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U A2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U A2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U A2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U A2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U A2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U A2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U A2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U A2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U A2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U A2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U A2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U A2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U A2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U A2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U A2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A A2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A A2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A A2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A A2874 26.891 15.766 1.987 1.00 51.91 O
TER
ATOM 1 O3' U B2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 2 P C B2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C B2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C B2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C B2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C B2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C B2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C B2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C B2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C B2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C B2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C B2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C B2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C B2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C B2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C B2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C B2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C B2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C B2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C B2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
TER
Atoms:
C4: (25.013,21.859,-2.506)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
C2: (18.584,21.997,3.621)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
Image (generated by PyMOL):