Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12394:12387
Extra
PDB:
ATOM 1 O3' U A2393 35.232 -33.189 47.646 1.00 36.61 O
ATOM 2 P A A2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 3 OP1 A A2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 4 OP2 A A2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 5 O5' A A2394 33.542 -32.199 49.089 1.00 37.51 O
ATOM 6 C5' A A2394 34.522 -31.251 49.375 1.00 37.29 C
ATOM 7 C4' A A2394 34.032 -29.879 49.094 1.00 37.15 C
ATOM 8 O4' A A2394 34.218 -29.579 47.693 1.00 37.27 O
ATOM 9 C3' A A2394 32.560 -29.652 49.348 1.00 37.16 C
ATOM 10 O3' A A2394 32.291 -29.406 50.725 1.00 36.99 O
ATOM 11 C2' A A2394 32.249 -28.477 48.422 1.00 37.13 C
ATOM 12 O2' A A2394 32.638 -27.247 49.029 1.00 36.89 O
ATOM 13 C1' A A2394 33.199 -28.754 47.245 1.00 37.27 C
ATOM 14 N9 A A2394 32.559 -29.451 46.150 1.00 37.54 N
ATOM 15 C8 A A2394 32.650 -30.783 45.893 1.00 37.75 C
ATOM 16 N7 A A2394 31.996 -31.066 44.791 1.00 37.99 N
ATOM 17 C5 A A2394 31.498 -29.853 44.325 1.00 37.91 C
ATOM 18 C6 A A2394 30.765 -29.455 43.211 1.00 38.07 C
ATOM 19 N6 A A2394 30.297 -30.231 42.216 1.00 38.37 N
ATOM 20 N1 A A2394 30.511 -28.133 43.119 1.00 37.93 N
ATOM 21 C2 A A2394 30.940 -27.283 44.043 1.00 37.66 C
ATOM 22 N3 A A2394 31.651 -27.566 45.114 1.00 37.49 N
ATOM 23 C4 A A2394 31.869 -28.860 45.167 1.00 37.64 C
ATOM 24 P A A2395 30.792 -29.555 51.353 1.00 36.82 P
ATOM 25 OP1 A A2395 30.954 -29.343 52.771 1.00 36.64 O
ATOM 26 OP2 A A2395 30.199 -30.836 50.898 1.00 37.08 O
ATOM 27 O5' A A2395 30.000 -28.341 50.706 1.00 36.78 O
TER
ATOM 1 O3' U B2386 28.612 -32.122 36.946 1.00 37.75 O
ATOM 2 P A B2387 30.204 -32.000 36.646 1.00 37.90 P
ATOM 3 OP1 A B2387 30.788 -31.269 37.833 1.00 37.52 O
ATOM 4 OP2 A B2387 30.396 -31.428 35.265 1.00 38.08 O
ATOM 5 O5' A B2387 30.677 -33.510 36.642 1.00 38.10 O
ATOM 6 C5' A B2387 31.900 -33.863 36.051 1.00 38.20 C
ATOM 7 C4' A B2387 32.521 -34.997 36.777 1.00 38.21 C
ATOM 8 O4' A B2387 32.810 -34.588 38.137 1.00 37.86 O
ATOM 9 C3' A B2387 31.655 -36.243 36.893 1.00 38.46 C
ATOM 10 O3' A B2387 32.451 -37.390 36.639 1.00 38.67 O
ATOM 11 C2' A B2387 31.198 -36.242 38.353 1.00 38.20 C
ATOM 12 O2' A B2387 30.929 -37.527 38.870 1.00 38.36 O
ATOM 13 C1' A B2387 32.403 -35.611 39.016 1.00 37.90 C
ATOM 14 N9 A B2387 32.197 -35.016 40.326 1.00 37.57 N
ATOM 15 C8 A B2387 31.947 -33.699 40.581 1.00 37.32 C
ATOM 16 N7 A B2387 31.942 -33.343 41.849 1.00 37.05 N
ATOM 17 C5 A B2387 32.248 -34.531 42.450 1.00 37.13 C
ATOM 18 C6 A B2387 32.418 -34.811 43.793 1.00 36.95 C
ATOM 19 N6 A B2387 32.290 -33.874 44.755 1.00 36.66 N
ATOM 20 N1 A B2387 32.732 -36.089 44.097 1.00 37.11 N
ATOM 21 C2 A B2387 32.881 -36.965 43.101 1.00 37.41 C
ATOM 22 N3 A B2387 32.787 -36.795 41.791 1.00 37.60 N
ATOM 23 C4 A B2387 32.454 -35.543 41.538 1.00 37.44 C
ATOM 24 P A B2388 32.719 -37.838 35.120 1.00 40.87 P
ATOM 25 OP1 A B2388 31.364 -37.886 34.378 1.00 41.12 O
ATOM 26 OP2 A B2388 33.495 -39.067 35.204 1.00 41.05 O
ATOM 27 O5' A B2388 33.599 -36.633 34.560 1.00 40.72 O
TER
ATOM 2 P A A2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 3 OP1 A A2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 4 OP2 A A2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 5 O5' A A2394 33.542 -32.199 49.089 1.00 37.51 O
ATOM 6 C5' A A2394 34.522 -31.251 49.375 1.00 37.29 C
ATOM 7 C4' A A2394 34.032 -29.879 49.094 1.00 37.15 C
ATOM 8 O4' A A2394 34.218 -29.579 47.693 1.00 37.27 O
ATOM 9 C3' A A2394 32.560 -29.652 49.348 1.00 37.16 C
ATOM 10 O3' A A2394 32.291 -29.406 50.725 1.00 36.99 O
ATOM 11 C2' A A2394 32.249 -28.477 48.422 1.00 37.13 C
ATOM 12 O2' A A2394 32.638 -27.247 49.029 1.00 36.89 O
ATOM 13 C1' A A2394 33.199 -28.754 47.245 1.00 37.27 C
ATOM 14 N9 A A2394 32.559 -29.451 46.150 1.00 37.54 N
ATOM 15 C8 A A2394 32.650 -30.783 45.893 1.00 37.75 C
ATOM 16 N7 A A2394 31.996 -31.066 44.791 1.00 37.99 N
ATOM 17 C5 A A2394 31.498 -29.853 44.325 1.00 37.91 C
ATOM 18 C6 A A2394 30.765 -29.455 43.211 1.00 38.07 C
ATOM 19 N6 A A2394 30.297 -30.231 42.216 1.00 38.37 N
ATOM 20 N1 A A2394 30.511 -28.133 43.119 1.00 37.93 N
ATOM 21 C2 A A2394 30.940 -27.283 44.043 1.00 37.66 C
ATOM 22 N3 A A2394 31.651 -27.566 45.114 1.00 37.49 N
ATOM 23 C4 A A2394 31.869 -28.860 45.167 1.00 37.64 C
ATOM 24 P A A2395 30.792 -29.555 51.353 1.00 36.82 P
ATOM 25 OP1 A A2395 30.954 -29.343 52.771 1.00 36.64 O
ATOM 26 OP2 A A2395 30.199 -30.836 50.898 1.00 37.08 O
ATOM 27 O5' A A2395 30.000 -28.341 50.706 1.00 36.78 O
TER
ATOM 1 O3' U B2386 28.612 -32.122 36.946 1.00 37.75 O
ATOM 2 P A B2387 30.204 -32.000 36.646 1.00 37.90 P
ATOM 3 OP1 A B2387 30.788 -31.269 37.833 1.00 37.52 O
ATOM 4 OP2 A B2387 30.396 -31.428 35.265 1.00 38.08 O
ATOM 5 O5' A B2387 30.677 -33.510 36.642 1.00 38.10 O
ATOM 6 C5' A B2387 31.900 -33.863 36.051 1.00 38.20 C
ATOM 7 C4' A B2387 32.521 -34.997 36.777 1.00 38.21 C
ATOM 8 O4' A B2387 32.810 -34.588 38.137 1.00 37.86 O
ATOM 9 C3' A B2387 31.655 -36.243 36.893 1.00 38.46 C
ATOM 10 O3' A B2387 32.451 -37.390 36.639 1.00 38.67 O
ATOM 11 C2' A B2387 31.198 -36.242 38.353 1.00 38.20 C
ATOM 12 O2' A B2387 30.929 -37.527 38.870 1.00 38.36 O
ATOM 13 C1' A B2387 32.403 -35.611 39.016 1.00 37.90 C
ATOM 14 N9 A B2387 32.197 -35.016 40.326 1.00 37.57 N
ATOM 15 C8 A B2387 31.947 -33.699 40.581 1.00 37.32 C
ATOM 16 N7 A B2387 31.942 -33.343 41.849 1.00 37.05 N
ATOM 17 C5 A B2387 32.248 -34.531 42.450 1.00 37.13 C
ATOM 18 C6 A B2387 32.418 -34.811 43.793 1.00 36.95 C
ATOM 19 N6 A B2387 32.290 -33.874 44.755 1.00 36.66 N
ATOM 20 N1 A B2387 32.732 -36.089 44.097 1.00 37.11 N
ATOM 21 C2 A B2387 32.881 -36.965 43.101 1.00 37.41 C
ATOM 22 N3 A B2387 32.787 -36.795 41.791 1.00 37.60 N
ATOM 23 C4 A B2387 32.454 -35.543 41.538 1.00 37.44 C
ATOM 24 P A B2388 32.719 -37.838 35.120 1.00 40.87 P
ATOM 25 OP1 A B2388 31.364 -37.886 34.378 1.00 41.12 O
ATOM 26 OP2 A B2388 33.495 -39.067 35.204 1.00 41.05 O
ATOM 27 O5' A B2388 33.599 -36.633 34.560 1.00 40.72 O
TER
Atoms:
OP1: (34.387,-34.481,49.587)
OP2: (32.903,-34.067,47.545)
C3': (32.560,-29.652,49.348)
C1': (33.199,-28.754,47.245)
C5': (34.522,-31.251,49.375)
O4': (34.218,-29.579,47.693)
C8: (32.650,-30.783,45.893)
O2': (32.638,-27.247,49.029)
C6: (30.765,-29.455,43.211)
C5: (31.498,-29.853,44.325)
C4: (31.869,-28.860,45.167)
P: (33.952,-33.584,48.501)
C4': (34.032,-29.879,49.094)
C2': (32.249,-28.477,48.422)
C2: (30.940,-27.283,44.043)
N1: (30.511,-28.133,43.119)
N3: (31.651,-27.566,45.114)
N6: (30.297,-30.231,42.216)
N7: (31.996,-31.066,44.791)
N9: (32.559,-29.451,46.150)
O5': (33.542,-32.199,49.089)
O3': (32.291,-29.406,50.725)
OP2: (32.903,-34.067,47.545)
C3': (32.560,-29.652,49.348)
C1': (33.199,-28.754,47.245)
C5': (34.522,-31.251,49.375)
O4': (34.218,-29.579,47.693)
C8: (32.650,-30.783,45.893)
O2': (32.638,-27.247,49.029)
C6: (30.765,-29.455,43.211)
C5: (31.498,-29.853,44.325)
C4: (31.869,-28.860,45.167)
P: (33.952,-33.584,48.501)
C4': (34.032,-29.879,49.094)
C2': (32.249,-28.477,48.422)
C2: (30.940,-27.283,44.043)
N1: (30.511,-28.133,43.119)
N3: (31.651,-27.566,45.114)
N6: (30.297,-30.231,42.216)
N7: (31.996,-31.066,44.791)
N9: (32.559,-29.451,46.150)
O5': (33.542,-32.199,49.089)
O3': (32.291,-29.406,50.725)
OP1: (30.788,-31.269,37.833)
OP2: (30.396,-31.428,35.265)
C3': (31.655,-36.243,36.893)
C1': (32.403,-35.611,39.016)
C5': (31.900,-33.863,36.051)
O4': (32.810,-34.588,38.137)
C8: (31.947,-33.699,40.581)
O2': (30.929,-37.527,38.870)
C6: (32.418,-34.811,43.793)
C5: (32.248,-34.531,42.450)
C4: (32.454,-35.543,41.538)
P: (30.204,-32.000,36.646)
C4': (32.521,-34.997,36.777)
C2': (31.198,-36.242,38.353)
C2: (32.881,-36.965,43.101)
N1: (32.732,-36.089,44.097)
N3: (32.787,-36.795,41.791)
N6: (32.290,-33.874,44.755)
N7: (31.942,-33.343,41.849)
N9: (32.197,-35.016,40.326)
O5': (30.677,-33.510,36.642)
O3': (32.451,-37.390,36.639)
OP2: (30.396,-31.428,35.265)
C3': (31.655,-36.243,36.893)
C1': (32.403,-35.611,39.016)
C5': (31.900,-33.863,36.051)
O4': (32.810,-34.588,38.137)
C8: (31.947,-33.699,40.581)
O2': (30.929,-37.527,38.870)
C6: (32.418,-34.811,43.793)
C5: (32.248,-34.531,42.450)
C4: (32.454,-35.543,41.538)
P: (30.204,-32.000,36.646)
C4': (32.521,-34.997,36.777)
C2': (31.198,-36.242,38.353)
C2: (32.881,-36.965,43.101)
N1: (32.732,-36.089,44.097)
N3: (32.787,-36.795,41.791)
N6: (32.290,-33.874,44.755)
N7: (31.942,-33.343,41.849)
N9: (32.197,-35.016,40.326)
O5': (30.677,-33.510,36.642)
O3': (32.451,-37.390,36.639)
Image (generated by PyMOL):