Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A22:A54
Extra
PDB:
ATOM 1 O3' A A 21 1.951 9.755 24.154 1.00 38.44 O
ATOM 2 P A A 22 2.295 9.530 25.710 1.00 46.27 P
ATOM 3 OP1 A A 22 1.308 10.315 26.492 1.00 45.74 O
ATOM 4 OP2 A A 22 3.740 9.818 25.889 1.00 43.98 O
ATOM 5 O5' A A 22 2.027 7.969 25.902 1.00 44.56 O
ATOM 6 C5' A A 22 0.751 7.495 26.297 1.00 43.07 C
ATOM 7 C4' A A 22 0.158 6.549 25.278 1.00 37.02 C
ATOM 8 O4' A A 22 0.148 7.169 23.963 1.00 35.11 O
ATOM 9 C3' A A 22 0.904 5.247 25.043 1.00 33.12 C
ATOM 10 O3' A A 22 0.695 4.286 26.061 1.00 31.52 O
ATOM 11 C2' A A 22 0.366 4.821 23.688 1.00 33.48 C
ATOM 12 O2' A A 22 -0.953 4.310 23.812 1.00 35.88 O
ATOM 13 C1' A A 22 0.294 6.168 22.971 1.00 33.90 C
ATOM 14 N9 A A 22 1.522 6.436 22.202 1.00 29.91 N
ATOM 15 C8 A A 22 2.537 7.317 22.475 1.00 30.97 C
ATOM 16 N7 A A 22 3.498 7.295 21.581 1.00 30.97 N
ATOM 17 C5 A A 22 3.089 6.335 20.666 1.00 28.77 C
ATOM 18 C6 A A 22 3.665 5.840 19.483 1.00 28.01 C
ATOM 19 N6 A A 22 4.831 6.267 18.990 1.00 28.94 N
ATOM 20 N1 A A 22 2.992 4.881 18.808 1.00 25.55 N
ATOM 21 C2 A A 22 1.821 4.457 19.298 1.00 25.13 C
ATOM 22 N3 A A 22 1.178 4.842 20.396 1.00 26.31 N
ATOM 23 C4 A A 22 1.874 5.797 21.040 1.00 29.02 C
ATOM 24 P G A 23 1.936 3.447 26.636 1.00 35.27 P
ATOM 25 OP1 G A 23 1.377 2.426 27.559 1.00 39.41 O
ATOM 26 OP2 G A 23 2.915 4.425 27.164 1.00 36.58 O
ATOM 27 O5' G A 23 2.525 2.740 25.336 1.00 32.53 O
TER
ATOM 1 O3' G B 53 12.913 13.315 22.154 1.00 56.85 O
ATOM 2 P A B 54 12.371 14.766 21.733 1.00 54.59 P
ATOM 3 OP1 A B 54 13.543 15.672 21.679 1.00 57.49 O
ATOM 4 OP2 A B 54 11.254 15.100 22.648 1.00 55.55 O
ATOM 5 O5' A B 54 11.812 14.516 20.267 1.00 57.49 O
ATOM 6 C5' A B 54 12.585 13.811 19.303 1.00 56.59 C
ATOM 7 C4' A B 54 11.737 13.334 18.152 1.00 55.34 C
ATOM 8 O4' A B 54 10.877 12.253 18.609 1.00 52.35 O
ATOM 9 C3' A B 54 10.811 14.389 17.545 1.00 56.79 C
ATOM 10 O3' A B 54 10.718 14.187 16.136 1.00 59.61 O
ATOM 11 C2' A B 54 9.467 14.073 18.194 1.00 54.73 C
ATOM 12 O2' A B 54 8.340 14.496 17.456 1.00 56.31 O
ATOM 13 C1' A B 54 9.532 12.557 18.302 1.00 49.84 C
ATOM 14 N9 A B 54 8.676 12.000 19.350 1.00 45.23 N
ATOM 15 C8 A B 54 8.337 12.561 20.556 1.00 43.45 C
ATOM 16 N7 A B 54 7.529 11.814 21.271 1.00 40.88 N
ATOM 17 C5 A B 54 7.316 10.695 20.475 1.00 37.08 C
ATOM 18 C6 A B 54 6.552 9.530 20.657 1.00 33.50 C
ATOM 19 N6 A B 54 5.828 9.288 21.750 1.00 32.29 N
ATOM 20 N1 A B 54 6.558 8.609 19.668 1.00 34.36 N
ATOM 21 C2 A B 54 7.286 8.852 18.572 1.00 32.43 C
ATOM 22 N3 A B 54 8.044 9.906 18.284 1.00 34.82 N
ATOM 23 C4 A B 54 8.013 10.800 19.287 1.00 38.95 C
ATOM 24 P A B 55 11.684 14.998 15.140 1.00 49.90 P
ATOM 25 OP1 A B 55 12.665 14.028 14.598 1.00 49.78 O
ATOM 26 OP2 A B 55 12.184 16.181 15.885 1.00 49.01 O
ATOM 27 O5' A B 55 10.692 15.468 13.987 1.00 41.23 O
TER
ATOM 2 P A A 22 2.295 9.530 25.710 1.00 46.27 P
ATOM 3 OP1 A A 22 1.308 10.315 26.492 1.00 45.74 O
ATOM 4 OP2 A A 22 3.740 9.818 25.889 1.00 43.98 O
ATOM 5 O5' A A 22 2.027 7.969 25.902 1.00 44.56 O
ATOM 6 C5' A A 22 0.751 7.495 26.297 1.00 43.07 C
ATOM 7 C4' A A 22 0.158 6.549 25.278 1.00 37.02 C
ATOM 8 O4' A A 22 0.148 7.169 23.963 1.00 35.11 O
ATOM 9 C3' A A 22 0.904 5.247 25.043 1.00 33.12 C
ATOM 10 O3' A A 22 0.695 4.286 26.061 1.00 31.52 O
ATOM 11 C2' A A 22 0.366 4.821 23.688 1.00 33.48 C
ATOM 12 O2' A A 22 -0.953 4.310 23.812 1.00 35.88 O
ATOM 13 C1' A A 22 0.294 6.168 22.971 1.00 33.90 C
ATOM 14 N9 A A 22 1.522 6.436 22.202 1.00 29.91 N
ATOM 15 C8 A A 22 2.537 7.317 22.475 1.00 30.97 C
ATOM 16 N7 A A 22 3.498 7.295 21.581 1.00 30.97 N
ATOM 17 C5 A A 22 3.089 6.335 20.666 1.00 28.77 C
ATOM 18 C6 A A 22 3.665 5.840 19.483 1.00 28.01 C
ATOM 19 N6 A A 22 4.831 6.267 18.990 1.00 28.94 N
ATOM 20 N1 A A 22 2.992 4.881 18.808 1.00 25.55 N
ATOM 21 C2 A A 22 1.821 4.457 19.298 1.00 25.13 C
ATOM 22 N3 A A 22 1.178 4.842 20.396 1.00 26.31 N
ATOM 23 C4 A A 22 1.874 5.797 21.040 1.00 29.02 C
ATOM 24 P G A 23 1.936 3.447 26.636 1.00 35.27 P
ATOM 25 OP1 G A 23 1.377 2.426 27.559 1.00 39.41 O
ATOM 26 OP2 G A 23 2.915 4.425 27.164 1.00 36.58 O
ATOM 27 O5' G A 23 2.525 2.740 25.336 1.00 32.53 O
TER
ATOM 1 O3' G B 53 12.913 13.315 22.154 1.00 56.85 O
ATOM 2 P A B 54 12.371 14.766 21.733 1.00 54.59 P
ATOM 3 OP1 A B 54 13.543 15.672 21.679 1.00 57.49 O
ATOM 4 OP2 A B 54 11.254 15.100 22.648 1.00 55.55 O
ATOM 5 O5' A B 54 11.812 14.516 20.267 1.00 57.49 O
ATOM 6 C5' A B 54 12.585 13.811 19.303 1.00 56.59 C
ATOM 7 C4' A B 54 11.737 13.334 18.152 1.00 55.34 C
ATOM 8 O4' A B 54 10.877 12.253 18.609 1.00 52.35 O
ATOM 9 C3' A B 54 10.811 14.389 17.545 1.00 56.79 C
ATOM 10 O3' A B 54 10.718 14.187 16.136 1.00 59.61 O
ATOM 11 C2' A B 54 9.467 14.073 18.194 1.00 54.73 C
ATOM 12 O2' A B 54 8.340 14.496 17.456 1.00 56.31 O
ATOM 13 C1' A B 54 9.532 12.557 18.302 1.00 49.84 C
ATOM 14 N9 A B 54 8.676 12.000 19.350 1.00 45.23 N
ATOM 15 C8 A B 54 8.337 12.561 20.556 1.00 43.45 C
ATOM 16 N7 A B 54 7.529 11.814 21.271 1.00 40.88 N
ATOM 17 C5 A B 54 7.316 10.695 20.475 1.00 37.08 C
ATOM 18 C6 A B 54 6.552 9.530 20.657 1.00 33.50 C
ATOM 19 N6 A B 54 5.828 9.288 21.750 1.00 32.29 N
ATOM 20 N1 A B 54 6.558 8.609 19.668 1.00 34.36 N
ATOM 21 C2 A B 54 7.286 8.852 18.572 1.00 32.43 C
ATOM 22 N3 A B 54 8.044 9.906 18.284 1.00 34.82 N
ATOM 23 C4 A B 54 8.013 10.800 19.287 1.00 38.95 C
ATOM 24 P A B 55 11.684 14.998 15.140 1.00 49.90 P
ATOM 25 OP1 A B 55 12.665 14.028 14.598 1.00 49.78 O
ATOM 26 OP2 A B 55 12.184 16.181 15.885 1.00 49.01 O
ATOM 27 O5' A B 55 10.692 15.468 13.987 1.00 41.23 O
TER
Atoms:
OP1: (1.308,10.315,26.492)
OP2: (3.740,9.818,25.889)
C3': (0.904,5.247,25.043)
C1': (0.294,6.168,22.971)
C5': (0.751,7.495,26.297)
O4': (0.148,7.169,23.963)
C8: (2.537,7.317,22.475)
O2': (-0.953,4.310,23.812)
C6: (3.665,5.840,19.483)
C5: (3.089,6.335,20.666)
C4: (1.874,5.797,21.040)
P: (2.295,9.530,25.710)
C4': (0.158,6.549,25.278)
C2': (0.366,4.821,23.688)
C2: (1.821,4.457,19.298)
N1: (2.992,4.881,18.808)
N3: (1.178,4.842,20.396)
N6: (4.831,6.267,18.990)
N7: (3.498,7.295,21.581)
N9: (1.522,6.436,22.202)
O5': (2.027,7.969,25.902)
O3': (0.695,4.286,26.061)
OP2: (3.740,9.818,25.889)
C3': (0.904,5.247,25.043)
C1': (0.294,6.168,22.971)
C5': (0.751,7.495,26.297)
O4': (0.148,7.169,23.963)
C8: (2.537,7.317,22.475)
O2': (-0.953,4.310,23.812)
C6: (3.665,5.840,19.483)
C5: (3.089,6.335,20.666)
C4: (1.874,5.797,21.040)
P: (2.295,9.530,25.710)
C4': (0.158,6.549,25.278)
C2': (0.366,4.821,23.688)
C2: (1.821,4.457,19.298)
N1: (2.992,4.881,18.808)
N3: (1.178,4.842,20.396)
N6: (4.831,6.267,18.990)
N7: (3.498,7.295,21.581)
N9: (1.522,6.436,22.202)
O5': (2.027,7.969,25.902)
O3': (0.695,4.286,26.061)
OP1: (13.543,15.672,21.679)
OP2: (11.254,15.100,22.648)
C3': (10.811,14.389,17.545)
C1': (9.532,12.557,18.302)
C5': (12.585,13.811,19.303)
O4': (10.877,12.253,18.609)
C8: (8.337,12.561,20.556)
O2': (8.340,14.496,17.456)
C6: (6.552,9.530,20.657)
C5: (7.316,10.695,20.475)
C4: (8.013,10.800,19.287)
P: (12.371,14.766,21.733)
C4': (11.737,13.334,18.152)
C2': (9.467,14.073,18.194)
C2: (7.286,8.852,18.572)
N1: (6.558,8.609,19.668)
N3: (8.044,9.906,18.284)
N6: (5.828,9.288,21.750)
N7: (7.529,11.814,21.271)
N9: (8.676,12.000,19.350)
O5': (11.812,14.516,20.267)
O3': (10.718,14.187,16.136)
OP2: (11.254,15.100,22.648)
C3': (10.811,14.389,17.545)
C1': (9.532,12.557,18.302)
C5': (12.585,13.811,19.303)
O4': (10.877,12.253,18.609)
C8: (8.337,12.561,20.556)
O2': (8.340,14.496,17.456)
C6: (6.552,9.530,20.657)
C5: (7.316,10.695,20.475)
C4: (8.013,10.800,19.287)
P: (12.371,14.766,21.733)
C4': (11.737,13.334,18.152)
C2': (9.467,14.073,18.194)
C2: (7.286,8.852,18.572)
N1: (6.558,8.609,19.668)
N3: (8.044,9.906,18.284)
N6: (5.828,9.288,21.750)
N7: (7.529,11.814,21.271)
N9: (8.676,12.000,19.350)
O5': (11.812,14.516,20.267)
O3': (10.718,14.187,16.136)
Image (generated by PyMOL):