Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DJ0:A41:A49
Extra
PDB:
ATOM 1 O3' C A 40 -3.256 55.561 1.768 1.00 38.55 O
ATOM 2 P A A 41 -3.333 54.140 2.492 1.00 37.70 P
ATOM 3 OP1 A A 41 -2.038 53.441 2.323 1.00 37.76 O
ATOM 4 OP2 A A 41 -4.594 53.486 2.058 1.00 37.59 O
ATOM 5 O5' A A 41 -3.490 54.582 4.020 1.00 36.55 O
ATOM 6 C5' A A 41 -2.347 54.932 4.791 1.00 34.55 C
ATOM 7 C4' A A 41 -2.319 54.072 6.038 1.00 33.26 C
ATOM 8 O4' A A 41 -3.578 54.214 6.741 1.00 32.08 O
ATOM 9 C3' A A 41 -2.144 52.573 5.783 1.00 32.98 C
ATOM 10 O3' A A 41 -1.096 52.056 6.602 1.00 33.97 O
ATOM 11 C2' A A 41 -3.497 51.970 6.151 1.00 31.93 C
ATOM 12 O2' A A 41 -3.392 50.668 6.690 1.00 31.44 O
ATOM 13 C1' A A 41 -3.958 52.946 7.226 1.00 30.82 C
ATOM 14 N9 A A 41 -5.397 52.928 7.475 1.00 29.69 N
ATOM 15 C8 A A 41 -6.407 52.949 6.550 1.00 29.12 C
ATOM 16 N7 A A 41 -7.605 52.921 7.079 1.00 28.98 N
ATOM 17 C5 A A 41 -7.360 52.878 8.444 1.00 28.71 C
ATOM 18 C6 A A 41 -8.210 52.835 9.566 1.00 28.25 C
ATOM 19 N6 A A 41 -9.540 52.827 9.469 1.00 29.08 N
ATOM 20 N1 A A 41 -7.648 52.805 10.794 1.00 28.07 N
ATOM 21 C2 A A 41 -6.314 52.816 10.890 1.00 27.93 C
ATOM 22 N3 A A 41 -5.413 52.855 9.909 1.00 28.15 N
ATOM 23 C4 A A 41 -6.005 52.884 8.705 1.00 28.69 C
ATOM 24 P G A 42 0.385 52.005 6.014 1.00 34.34 P
ATOM 25 OP1 G A 42 1.004 53.334 6.224 1.00 35.27 O
ATOM 26 OP2 G A 42 0.296 51.432 4.649 1.00 34.74 O
ATOM 27 O5' G A 42 1.109 50.946 6.957 1.00 34.82 O
TER
ATOM 1 O3' G B 48 -15.292 48.232 0.074 1.00 32.31 O
ATOM 2 P A B 49 -15.677 49.785 0.146 1.00 32.48 P
ATOM 3 OP1 A B 49 -16.934 49.991 -0.610 1.00 31.62 O
ATOM 4 OP2 A B 49 -14.468 50.573 -0.199 1.00 32.32 O
ATOM 5 O5' A B 49 -15.961 49.964 1.714 1.00 32.34 O
ATOM 6 C5' A B 49 -17.003 49.216 2.339 1.00 32.27 C
ATOM 7 C4' A B 49 -16.841 49.195 3.847 1.00 32.14 C
ATOM 8 O4' A B 49 -15.514 48.730 4.197 1.00 31.87 O
ATOM 9 C3' A B 49 -16.940 50.554 4.521 1.00 32.32 C
ATOM 10 O3' A B 49 -18.290 50.918 4.737 1.00 32.64 O
ATOM 11 C2' A B 49 -16.199 50.312 5.828 1.00 32.11 C
ATOM 12 O2' A B 49 -16.997 49.665 6.802 1.00 32.70 O
ATOM 13 C1' A B 49 -15.062 49.401 5.364 1.00 30.99 C
ATOM 14 N9 A B 49 -13.808 50.106 5.071 1.00 29.98 N
ATOM 15 C8 A B 49 -13.238 50.318 3.846 1.00 29.55 C
ATOM 16 N7 A B 49 -12.105 50.977 3.888 1.00 29.11 N
ATOM 17 C5 A B 49 -11.912 51.219 5.235 1.00 29.00 C
ATOM 18 C6 A B 49 -10.889 51.876 5.954 1.00 28.91 C
ATOM 19 N6 A B 49 -9.822 52.433 5.374 1.00 29.54 N
ATOM 20 N1 A B 49 -11.001 51.944 7.299 1.00 28.29 N
ATOM 21 C2 A B 49 -12.067 51.386 7.885 1.00 28.34 C
ATOM 22 N3 A B 49 -13.084 50.738 7.316 1.00 28.70 N
ATOM 23 C4 A B 49 -12.950 50.687 5.979 1.00 29.26 C
ATOM 24 P A B 50 -18.783 52.331 4.175 1.00 33.68 P
ATOM 25 OP1 A B 50 -20.259 52.371 4.288 1.00 33.39 O
ATOM 26 OP2 A B 50 -18.154 52.560 2.854 1.00 33.34 O
ATOM 27 O5' A B 50 -18.127 53.373 5.202 1.00 34.09 O
TER
ATOM 2 P A A 41 -3.333 54.140 2.492 1.00 37.70 P
ATOM 3 OP1 A A 41 -2.038 53.441 2.323 1.00 37.76 O
ATOM 4 OP2 A A 41 -4.594 53.486 2.058 1.00 37.59 O
ATOM 5 O5' A A 41 -3.490 54.582 4.020 1.00 36.55 O
ATOM 6 C5' A A 41 -2.347 54.932 4.791 1.00 34.55 C
ATOM 7 C4' A A 41 -2.319 54.072 6.038 1.00 33.26 C
ATOM 8 O4' A A 41 -3.578 54.214 6.741 1.00 32.08 O
ATOM 9 C3' A A 41 -2.144 52.573 5.783 1.00 32.98 C
ATOM 10 O3' A A 41 -1.096 52.056 6.602 1.00 33.97 O
ATOM 11 C2' A A 41 -3.497 51.970 6.151 1.00 31.93 C
ATOM 12 O2' A A 41 -3.392 50.668 6.690 1.00 31.44 O
ATOM 13 C1' A A 41 -3.958 52.946 7.226 1.00 30.82 C
ATOM 14 N9 A A 41 -5.397 52.928 7.475 1.00 29.69 N
ATOM 15 C8 A A 41 -6.407 52.949 6.550 1.00 29.12 C
ATOM 16 N7 A A 41 -7.605 52.921 7.079 1.00 28.98 N
ATOM 17 C5 A A 41 -7.360 52.878 8.444 1.00 28.71 C
ATOM 18 C6 A A 41 -8.210 52.835 9.566 1.00 28.25 C
ATOM 19 N6 A A 41 -9.540 52.827 9.469 1.00 29.08 N
ATOM 20 N1 A A 41 -7.648 52.805 10.794 1.00 28.07 N
ATOM 21 C2 A A 41 -6.314 52.816 10.890 1.00 27.93 C
ATOM 22 N3 A A 41 -5.413 52.855 9.909 1.00 28.15 N
ATOM 23 C4 A A 41 -6.005 52.884 8.705 1.00 28.69 C
ATOM 24 P G A 42 0.385 52.005 6.014 1.00 34.34 P
ATOM 25 OP1 G A 42 1.004 53.334 6.224 1.00 35.27 O
ATOM 26 OP2 G A 42 0.296 51.432 4.649 1.00 34.74 O
ATOM 27 O5' G A 42 1.109 50.946 6.957 1.00 34.82 O
TER
ATOM 1 O3' G B 48 -15.292 48.232 0.074 1.00 32.31 O
ATOM 2 P A B 49 -15.677 49.785 0.146 1.00 32.48 P
ATOM 3 OP1 A B 49 -16.934 49.991 -0.610 1.00 31.62 O
ATOM 4 OP2 A B 49 -14.468 50.573 -0.199 1.00 32.32 O
ATOM 5 O5' A B 49 -15.961 49.964 1.714 1.00 32.34 O
ATOM 6 C5' A B 49 -17.003 49.216 2.339 1.00 32.27 C
ATOM 7 C4' A B 49 -16.841 49.195 3.847 1.00 32.14 C
ATOM 8 O4' A B 49 -15.514 48.730 4.197 1.00 31.87 O
ATOM 9 C3' A B 49 -16.940 50.554 4.521 1.00 32.32 C
ATOM 10 O3' A B 49 -18.290 50.918 4.737 1.00 32.64 O
ATOM 11 C2' A B 49 -16.199 50.312 5.828 1.00 32.11 C
ATOM 12 O2' A B 49 -16.997 49.665 6.802 1.00 32.70 O
ATOM 13 C1' A B 49 -15.062 49.401 5.364 1.00 30.99 C
ATOM 14 N9 A B 49 -13.808 50.106 5.071 1.00 29.98 N
ATOM 15 C8 A B 49 -13.238 50.318 3.846 1.00 29.55 C
ATOM 16 N7 A B 49 -12.105 50.977 3.888 1.00 29.11 N
ATOM 17 C5 A B 49 -11.912 51.219 5.235 1.00 29.00 C
ATOM 18 C6 A B 49 -10.889 51.876 5.954 1.00 28.91 C
ATOM 19 N6 A B 49 -9.822 52.433 5.374 1.00 29.54 N
ATOM 20 N1 A B 49 -11.001 51.944 7.299 1.00 28.29 N
ATOM 21 C2 A B 49 -12.067 51.386 7.885 1.00 28.34 C
ATOM 22 N3 A B 49 -13.084 50.738 7.316 1.00 28.70 N
ATOM 23 C4 A B 49 -12.950 50.687 5.979 1.00 29.26 C
ATOM 24 P A B 50 -18.783 52.331 4.175 1.00 33.68 P
ATOM 25 OP1 A B 50 -20.259 52.371 4.288 1.00 33.39 O
ATOM 26 OP2 A B 50 -18.154 52.560 2.854 1.00 33.34 O
ATOM 27 O5' A B 50 -18.127 53.373 5.202 1.00 34.09 O
TER
Atoms:
OP1: (-2.038,53.441,2.323)
OP2: (-4.594,53.486,2.058)
C3': (-2.144,52.573,5.783)
C1': (-3.958,52.946,7.226)
C5': (-2.347,54.932,4.791)
O4': (-3.578,54.214,6.741)
C8: (-6.407,52.949,6.550)
O2': (-3.392,50.668,6.690)
C6: (-8.210,52.835,9.566)
C5: (-7.360,52.878,8.444)
C4: (-6.005,52.884,8.705)
P: (-3.333,54.140,2.492)
C4': (-2.319,54.072,6.038)
C2': (-3.497,51.970,6.151)
C2: (-6.314,52.816,10.890)
N1: (-7.648,52.805,10.794)
N3: (-5.413,52.855,9.909)
N6: (-9.540,52.827,9.469)
N7: (-7.605,52.921,7.079)
N9: (-5.397,52.928,7.475)
O5': (-3.490,54.582,4.020)
O3': (-1.096,52.056,6.602)
OP2: (-4.594,53.486,2.058)
C3': (-2.144,52.573,5.783)
C1': (-3.958,52.946,7.226)
C5': (-2.347,54.932,4.791)
O4': (-3.578,54.214,6.741)
C8: (-6.407,52.949,6.550)
O2': (-3.392,50.668,6.690)
C6: (-8.210,52.835,9.566)
C5: (-7.360,52.878,8.444)
C4: (-6.005,52.884,8.705)
P: (-3.333,54.140,2.492)
C4': (-2.319,54.072,6.038)
C2': (-3.497,51.970,6.151)
C2: (-6.314,52.816,10.890)
N1: (-7.648,52.805,10.794)
N3: (-5.413,52.855,9.909)
N6: (-9.540,52.827,9.469)
N7: (-7.605,52.921,7.079)
N9: (-5.397,52.928,7.475)
O5': (-3.490,54.582,4.020)
O3': (-1.096,52.056,6.602)
OP1: (-16.934,49.991,-0.610)
OP2: (-14.468,50.573,-0.199)
C3': (-16.940,50.554,4.521)
C1': (-15.062,49.401,5.364)
C5': (-17.003,49.216,2.339)
O4': (-15.514,48.730,4.197)
C8: (-13.238,50.318,3.846)
O2': (-16.997,49.665,6.802)
C6: (-10.889,51.876,5.954)
C5: (-11.912,51.219,5.235)
C4: (-12.950,50.687,5.979)
P: (-15.677,49.785,0.146)
C4': (-16.841,49.195,3.847)
C2': (-16.199,50.312,5.828)
C2: (-12.067,51.386,7.885)
N1: (-11.001,51.944,7.299)
N3: (-13.084,50.738,7.316)
N6: (-9.822,52.433,5.374)
N7: (-12.105,50.977,3.888)
N9: (-13.808,50.106,5.071)
O5': (-15.961,49.964,1.714)
O3': (-18.290,50.918,4.737)
OP2: (-14.468,50.573,-0.199)
C3': (-16.940,50.554,4.521)
C1': (-15.062,49.401,5.364)
C5': (-17.003,49.216,2.339)
O4': (-15.514,48.730,4.197)
C8: (-13.238,50.318,3.846)
O2': (-16.997,49.665,6.802)
C6: (-10.889,51.876,5.954)
C5: (-11.912,51.219,5.235)
C4: (-12.950,50.687,5.979)
P: (-15.677,49.785,0.146)
C4': (-16.841,49.195,3.847)
C2': (-16.199,50.312,5.828)
C2: (-12.067,51.386,7.885)
N1: (-11.001,51.944,7.299)
N3: (-13.084,50.738,7.316)
N6: (-9.822,52.433,5.374)
N7: (-12.105,50.977,3.888)
N9: (-13.808,50.106,5.071)
O5': (-15.961,49.964,1.714)
O3': (-18.290,50.918,4.737)
Image (generated by PyMOL):