Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12000:12050
Extra
PDB:
ATOM 1 O3' C A1999 -22.566 -2.419 92.029 1.00 60.89 O
ATOM 2 P U A2000 -22.100 -3.840 92.644 1.00 52.06 P
ATOM 3 OP1 U A2000 -23.206 -4.778 92.462 1.00 52.29 O
ATOM 4 OP2 U A2000 -21.579 -3.617 94.015 1.00 52.11 O
ATOM 5 O5' U A2000 -20.937 -4.227 91.676 1.00 51.59 O
ATOM 6 C5' U A2000 -20.317 -5.466 91.752 1.00 51.37 C
ATOM 7 C4' U A2000 -18.897 -5.321 91.423 1.00 50.96 C
ATOM 8 O4' U A2000 -18.473 -3.982 91.759 1.00 50.96 O
ATOM 9 C3' U A2000 -17.985 -6.215 92.200 1.00 50.77 C
ATOM 10 O3' U A2000 -17.888 -7.469 91.608 1.00 50.62 O
ATOM 11 C2' U A2000 -16.663 -5.463 92.206 1.00 50.47 C
ATOM 12 O2' U A2000 -15.886 -5.772 91.030 1.00 50.12 O
ATOM 13 C1' U A2000 -17.120 -4.001 92.136 1.00 50.66 C
ATOM 14 N1 U A2000 -16.953 -3.296 93.412 1.00 50.83 N
ATOM 15 C2 U A2000 -15.640 -3.082 93.755 1.00 50.56 C
ATOM 16 O2 U A2000 -14.733 -3.478 93.053 1.00 50.22 O
ATOM 17 N3 U A2000 -15.364 -2.411 94.916 1.00 50.70 N
ATOM 18 C4 U A2000 -16.313 -1.932 95.740 1.00 51.09 C
ATOM 19 O4 U A2000 -15.940 -1.357 96.737 1.00 51.20 O
ATOM 20 C5 U A2000 -17.656 -2.184 95.324 1.00 51.35 C
ATOM 21 C6 U A2000 -17.950 -2.833 94.198 1.00 51.22 C
ATOM 22 P G A2001 -18.357 -8.724 92.408 1.00 54.38 P
ATOM 23 OP1 G A2001 -19.123 -8.199 93.568 1.00 54.75 O
ATOM 24 OP2 G A2001 -17.171 -9.577 92.657 1.00 54.09 O
ATOM 25 O5' G A2001 -19.315 -9.446 91.359 1.00 54.49 O
TER
ATOM 1 O3' A B2049 -11.215 -12.092 95.543 1.00 52.84 O
ATOM 2 P A B2050 -12.372 -10.991 95.254 1.00 43.34 P
ATOM 3 OP1 A B2050 -13.441 -11.169 96.276 1.00 43.74 O
ATOM 4 OP2 A B2050 -12.745 -11.057 93.817 1.00 43.22 O
ATOM 5 O5' A B2050 -11.604 -9.633 95.508 1.00 43.23 O
ATOM 6 C5' A B2050 -10.367 -9.362 94.837 1.00 42.86 C
ATOM 7 C4' A B2050 -9.398 -8.679 95.744 1.00 42.81 C
ATOM 8 O4' A B2050 -9.840 -7.332 95.934 1.00 42.98 O
ATOM 9 C3' A B2050 -9.293 -9.289 97.129 1.00 42.99 C
ATOM 10 O3' A B2050 -7.992 -9.168 97.629 1.00 42.80 O
ATOM 11 C2' A B2050 -10.177 -8.431 97.965 1.00 43.34 C
ATOM 12 O2' A B2050 -9.767 -8.365 99.296 1.00 43.48 O
ATOM 13 C1' A B2050 -10.061 -7.085 97.296 1.00 43.25 C
ATOM 14 N9 A B2050 -11.278 -6.302 97.418 1.00 43.57 N
ATOM 15 C8 A B2050 -12.516 -6.802 97.170 1.00 43.79 C
ATOM 16 N7 A B2050 -13.444 -5.910 97.360 1.00 44.08 N
ATOM 17 C5 A B2050 -12.788 -4.757 97.770 1.00 44.05 C
ATOM 18 C6 A B2050 -13.215 -3.460 98.135 1.00 44.29 C
ATOM 19 N6 A B2050 -14.459 -3.028 98.152 1.00 44.61 N
ATOM 20 N1 A B2050 -12.271 -2.557 98.485 1.00 44.19 N
ATOM 21 C2 A B2050 -10.985 -2.920 98.439 1.00 43.87 C
ATOM 22 N3 A B2050 -10.480 -4.095 98.135 1.00 43.63 N
ATOM 23 C4 A B2050 -11.430 -4.990 97.810 1.00 43.74 C
ATOM 24 P A B2051 -7.219 -10.471 98.124 1.00 43.19 P
ATOM 25 OP1 A B2051 -8.143 -11.208 98.959 1.00 43.51 O
ATOM 26 OP2 A B2051 -5.936 -10.039 98.702 1.00 43.04 O
ATOM 27 O5' A B2051 -6.957 -11.196 96.734 1.00 42.90 O
TER
ATOM 2 P U A2000 -22.100 -3.840 92.644 1.00 52.06 P
ATOM 3 OP1 U A2000 -23.206 -4.778 92.462 1.00 52.29 O
ATOM 4 OP2 U A2000 -21.579 -3.617 94.015 1.00 52.11 O
ATOM 5 O5' U A2000 -20.937 -4.227 91.676 1.00 51.59 O
ATOM 6 C5' U A2000 -20.317 -5.466 91.752 1.00 51.37 C
ATOM 7 C4' U A2000 -18.897 -5.321 91.423 1.00 50.96 C
ATOM 8 O4' U A2000 -18.473 -3.982 91.759 1.00 50.96 O
ATOM 9 C3' U A2000 -17.985 -6.215 92.200 1.00 50.77 C
ATOM 10 O3' U A2000 -17.888 -7.469 91.608 1.00 50.62 O
ATOM 11 C2' U A2000 -16.663 -5.463 92.206 1.00 50.47 C
ATOM 12 O2' U A2000 -15.886 -5.772 91.030 1.00 50.12 O
ATOM 13 C1' U A2000 -17.120 -4.001 92.136 1.00 50.66 C
ATOM 14 N1 U A2000 -16.953 -3.296 93.412 1.00 50.83 N
ATOM 15 C2 U A2000 -15.640 -3.082 93.755 1.00 50.56 C
ATOM 16 O2 U A2000 -14.733 -3.478 93.053 1.00 50.22 O
ATOM 17 N3 U A2000 -15.364 -2.411 94.916 1.00 50.70 N
ATOM 18 C4 U A2000 -16.313 -1.932 95.740 1.00 51.09 C
ATOM 19 O4 U A2000 -15.940 -1.357 96.737 1.00 51.20 O
ATOM 20 C5 U A2000 -17.656 -2.184 95.324 1.00 51.35 C
ATOM 21 C6 U A2000 -17.950 -2.833 94.198 1.00 51.22 C
ATOM 22 P G A2001 -18.357 -8.724 92.408 1.00 54.38 P
ATOM 23 OP1 G A2001 -19.123 -8.199 93.568 1.00 54.75 O
ATOM 24 OP2 G A2001 -17.171 -9.577 92.657 1.00 54.09 O
ATOM 25 O5' G A2001 -19.315 -9.446 91.359 1.00 54.49 O
TER
ATOM 1 O3' A B2049 -11.215 -12.092 95.543 1.00 52.84 O
ATOM 2 P A B2050 -12.372 -10.991 95.254 1.00 43.34 P
ATOM 3 OP1 A B2050 -13.441 -11.169 96.276 1.00 43.74 O
ATOM 4 OP2 A B2050 -12.745 -11.057 93.817 1.00 43.22 O
ATOM 5 O5' A B2050 -11.604 -9.633 95.508 1.00 43.23 O
ATOM 6 C5' A B2050 -10.367 -9.362 94.837 1.00 42.86 C
ATOM 7 C4' A B2050 -9.398 -8.679 95.744 1.00 42.81 C
ATOM 8 O4' A B2050 -9.840 -7.332 95.934 1.00 42.98 O
ATOM 9 C3' A B2050 -9.293 -9.289 97.129 1.00 42.99 C
ATOM 10 O3' A B2050 -7.992 -9.168 97.629 1.00 42.80 O
ATOM 11 C2' A B2050 -10.177 -8.431 97.965 1.00 43.34 C
ATOM 12 O2' A B2050 -9.767 -8.365 99.296 1.00 43.48 O
ATOM 13 C1' A B2050 -10.061 -7.085 97.296 1.00 43.25 C
ATOM 14 N9 A B2050 -11.278 -6.302 97.418 1.00 43.57 N
ATOM 15 C8 A B2050 -12.516 -6.802 97.170 1.00 43.79 C
ATOM 16 N7 A B2050 -13.444 -5.910 97.360 1.00 44.08 N
ATOM 17 C5 A B2050 -12.788 -4.757 97.770 1.00 44.05 C
ATOM 18 C6 A B2050 -13.215 -3.460 98.135 1.00 44.29 C
ATOM 19 N6 A B2050 -14.459 -3.028 98.152 1.00 44.61 N
ATOM 20 N1 A B2050 -12.271 -2.557 98.485 1.00 44.19 N
ATOM 21 C2 A B2050 -10.985 -2.920 98.439 1.00 43.87 C
ATOM 22 N3 A B2050 -10.480 -4.095 98.135 1.00 43.63 N
ATOM 23 C4 A B2050 -11.430 -4.990 97.810 1.00 43.74 C
ATOM 24 P A B2051 -7.219 -10.471 98.124 1.00 43.19 P
ATOM 25 OP1 A B2051 -8.143 -11.208 98.959 1.00 43.51 O
ATOM 26 OP2 A B2051 -5.936 -10.039 98.702 1.00 43.04 O
ATOM 27 O5' A B2051 -6.957 -11.196 96.734 1.00 42.90 O
TER
Atoms:
C4: (-16.313,-1.932,95.740)
N3: (-15.364,-2.411,94.916)
OP1: (-23.206,-4.778,92.462)
OP2: (-21.579,-3.617,94.015)
C2: (-15.640,-3.082,93.755)
C1': (-17.120,-4.001,92.136)
C3': (-17.985,-6.215,92.200)
O5': (-20.937,-4.227,91.676)
O4': (-18.473,-3.982,91.759)
C5': (-20.317,-5.466,91.752)
P: (-22.100,-3.840,92.644)
C4': (-18.897,-5.321,91.423)
C2': (-16.663,-5.463,92.206)
O2': (-15.886,-5.772,91.030)
N1: (-16.953,-3.296,93.412)
O4: (-15.940,-1.357,96.737)
O2: (-14.733,-3.478,93.053)
C6: (-17.950,-2.833,94.198)
C5: (-17.656,-2.184,95.324)
O3': (-17.888,-7.469,91.608)
N3: (-15.364,-2.411,94.916)
OP1: (-23.206,-4.778,92.462)
OP2: (-21.579,-3.617,94.015)
C2: (-15.640,-3.082,93.755)
C1': (-17.120,-4.001,92.136)
C3': (-17.985,-6.215,92.200)
O5': (-20.937,-4.227,91.676)
O4': (-18.473,-3.982,91.759)
C5': (-20.317,-5.466,91.752)
P: (-22.100,-3.840,92.644)
C4': (-18.897,-5.321,91.423)
C2': (-16.663,-5.463,92.206)
O2': (-15.886,-5.772,91.030)
N1: (-16.953,-3.296,93.412)
O4: (-15.940,-1.357,96.737)
O2: (-14.733,-3.478,93.053)
C6: (-17.950,-2.833,94.198)
C5: (-17.656,-2.184,95.324)
O3': (-17.888,-7.469,91.608)
OP1: (-13.441,-11.169,96.276)
OP2: (-12.745,-11.057,93.817)
C3': (-9.293,-9.289,97.129)
C1': (-10.061,-7.085,97.296)
C5': (-10.367,-9.362,94.837)
O4': (-9.840,-7.332,95.934)
C8: (-12.516,-6.802,97.170)
O2': (-9.767,-8.365,99.296)
C6: (-13.215,-3.460,98.135)
C5: (-12.788,-4.757,97.770)
C4: (-11.430,-4.990,97.810)
P: (-12.372,-10.991,95.254)
C4': (-9.398,-8.679,95.744)
C2': (-10.177,-8.431,97.965)
C2: (-10.985,-2.920,98.439)
N1: (-12.271,-2.557,98.485)
N3: (-10.480,-4.095,98.135)
N6: (-14.459,-3.028,98.152)
N7: (-13.444,-5.910,97.360)
N9: (-11.278,-6.302,97.418)
O5': (-11.604,-9.633,95.508)
O3': (-7.992,-9.168,97.629)
OP2: (-12.745,-11.057,93.817)
C3': (-9.293,-9.289,97.129)
C1': (-10.061,-7.085,97.296)
C5': (-10.367,-9.362,94.837)
O4': (-9.840,-7.332,95.934)
C8: (-12.516,-6.802,97.170)
O2': (-9.767,-8.365,99.296)
C6: (-13.215,-3.460,98.135)
C5: (-12.788,-4.757,97.770)
C4: (-11.430,-4.990,97.810)
P: (-12.372,-10.991,95.254)
C4': (-9.398,-8.679,95.744)
C2': (-10.177,-8.431,97.965)
C2: (-10.985,-2.920,98.439)
N1: (-12.271,-2.557,98.485)
N3: (-10.480,-4.095,98.135)
N6: (-14.459,-3.028,98.152)
N7: (-13.444,-5.910,97.360)
N9: (-11.278,-6.302,97.418)
O5': (-11.604,-9.633,95.508)
O3': (-7.992,-9.168,97.629)
Image (generated by PyMOL):