Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:D20:D49
Extra
PDB:
ATOM 1 O3' U A 19 1.535 -0.093 -55.720 1.00 55.71 O
ATOM 2 P A A 20 0.226 0.754 -56.104 1.00 47.94 P
ATOM 3 OP1 A A 20 0.647 2.167 -56.244 1.00 50.57 O
ATOM 4 OP2 A A 20 -0.819 0.418 -55.108 1.00 47.36 O
ATOM 5 O5' A A 20 -0.172 0.166 -57.527 1.00 49.66 O
ATOM 6 C5' A A 20 0.134 0.874 -58.723 1.00 48.45 C
ATOM 7 C4' A A 20 -0.608 0.306 -59.905 1.00 48.25 C
ATOM 8 O4' A A 20 -0.132 -1.043 -60.157 1.00 51.74 O
ATOM 9 C3' A A 20 -2.117 0.198 -59.725 1.00 48.99 C
ATOM 10 O3' A A 20 -2.762 0.383 -60.985 1.00 50.57 O
ATOM 11 C2' A A 20 -2.299 -1.243 -59.258 1.00 46.10 C
ATOM 12 O2' A A 20 -3.573 -1.791 -59.526 1.00 44.09 O
ATOM 13 C1' A A 20 -1.197 -1.967 -60.031 1.00 45.54 C
ATOM 14 N9 A A 20 -0.683 -3.157 -59.348 1.00 43.35 N
ATOM 15 C8 A A 20 0.160 -3.188 -58.266 1.00 43.27 C
ATOM 16 N7 A A 20 0.456 -4.398 -57.857 1.00 46.14 N
ATOM 17 C5 A A 20 -0.240 -5.221 -58.732 1.00 42.36 C
ATOM 18 C6 A A 20 -0.345 -6.620 -58.836 1.00 38.55 C
ATOM 19 N6 A A 20 0.276 -7.474 -58.018 1.00 38.53 N
ATOM 20 N1 A A 20 -1.121 -7.121 -59.822 1.00 42.28 N
ATOM 21 C2 A A 20 -1.745 -6.266 -60.643 1.00 43.37 C
ATOM 22 N3 A A 20 -1.727 -4.935 -60.648 1.00 42.45 N
ATOM 23 C4 A A 20 -0.946 -4.469 -59.657 1.00 42.93 C
ATOM 24 P U A 21 -3.692 1.670 -61.232 1.00 60.47 P
ATOM 25 OP1 U A 21 -4.316 2.013 -59.929 1.00 57.17 O
ATOM 26 OP2 U A 21 -4.572 1.360 -62.383 1.00 58.00 O
ATOM 27 O5' U A 21 -2.641 2.795 -61.640 1.00 55.81 O
TER
ATOM 1 O3' U B 48 0.871 -5.139 -48.394 1.00 68.30 O
ATOM 2 P A B 49 2.482 -5.110 -48.475 1.00 78.72 P
ATOM 3 OP1 A B 49 2.955 -4.271 -47.349 1.00 79.48 O
ATOM 4 OP2 A B 49 2.848 -4.712 -49.856 1.00 69.20 O
ATOM 5 O5' A B 49 2.889 -6.629 -48.220 1.00 64.45 O
ATOM 6 C5' A B 49 4.221 -6.973 -47.865 1.00 64.70 C
ATOM 7 C4' A B 49 4.822 -7.958 -48.838 1.00 63.86 C
ATOM 8 O4' A B 49 3.957 -8.103 -49.993 1.00 66.31 O
ATOM 9 C3' A B 49 6.169 -7.572 -49.430 1.00 60.79 C
ATOM 10 O3' A B 49 7.255 -7.860 -48.569 1.00 58.48 O
ATOM 11 C2' A B 49 6.201 -8.357 -50.736 1.00 56.66 C
ATOM 12 O2' A B 49 6.547 -9.714 -50.498 1.00 58.37 O
ATOM 13 C1' A B 49 4.733 -8.300 -51.158 1.00 61.05 C
ATOM 14 N9 A B 49 4.466 -7.188 -52.090 1.00 55.64 N
ATOM 15 C8 A B 49 4.868 -5.878 -51.986 1.00 48.13 C
ATOM 16 N7 A B 49 4.461 -5.120 -52.976 1.00 46.01 N
ATOM 17 C5 A B 49 3.739 -5.989 -53.784 1.00 47.38 C
ATOM 18 C6 A B 49 3.043 -5.805 -54.993 1.00 44.77 C
ATOM 19 N6 A B 49 2.962 -4.637 -55.632 1.00 41.85 N
ATOM 20 N1 A B 49 2.433 -6.880 -55.539 1.00 42.88 N
ATOM 21 C2 A B 49 2.518 -8.052 -54.899 1.00 47.72 C
ATOM 22 N3 A B 49 3.136 -8.353 -53.760 1.00 49.09 N
ATOM 23 C4 A B 49 3.734 -7.265 -53.248 1.00 50.72 C
ATOM 24 P A B 50 8.753 -7.497 -49.014 1.00 65.33 P
ATOM 25 OP1 A B 50 9.589 -7.503 -47.787 1.00 63.21 O
ATOM 26 OP2 A B 50 8.680 -6.252 -49.823 1.00 60.77 O
ATOM 27 O5' A B 50 9.151 -8.725 -49.946 1.00 53.85 O
TER
ATOM 2 P A A 20 0.226 0.754 -56.104 1.00 47.94 P
ATOM 3 OP1 A A 20 0.647 2.167 -56.244 1.00 50.57 O
ATOM 4 OP2 A A 20 -0.819 0.418 -55.108 1.00 47.36 O
ATOM 5 O5' A A 20 -0.172 0.166 -57.527 1.00 49.66 O
ATOM 6 C5' A A 20 0.134 0.874 -58.723 1.00 48.45 C
ATOM 7 C4' A A 20 -0.608 0.306 -59.905 1.00 48.25 C
ATOM 8 O4' A A 20 -0.132 -1.043 -60.157 1.00 51.74 O
ATOM 9 C3' A A 20 -2.117 0.198 -59.725 1.00 48.99 C
ATOM 10 O3' A A 20 -2.762 0.383 -60.985 1.00 50.57 O
ATOM 11 C2' A A 20 -2.299 -1.243 -59.258 1.00 46.10 C
ATOM 12 O2' A A 20 -3.573 -1.791 -59.526 1.00 44.09 O
ATOM 13 C1' A A 20 -1.197 -1.967 -60.031 1.00 45.54 C
ATOM 14 N9 A A 20 -0.683 -3.157 -59.348 1.00 43.35 N
ATOM 15 C8 A A 20 0.160 -3.188 -58.266 1.00 43.27 C
ATOM 16 N7 A A 20 0.456 -4.398 -57.857 1.00 46.14 N
ATOM 17 C5 A A 20 -0.240 -5.221 -58.732 1.00 42.36 C
ATOM 18 C6 A A 20 -0.345 -6.620 -58.836 1.00 38.55 C
ATOM 19 N6 A A 20 0.276 -7.474 -58.018 1.00 38.53 N
ATOM 20 N1 A A 20 -1.121 -7.121 -59.822 1.00 42.28 N
ATOM 21 C2 A A 20 -1.745 -6.266 -60.643 1.00 43.37 C
ATOM 22 N3 A A 20 -1.727 -4.935 -60.648 1.00 42.45 N
ATOM 23 C4 A A 20 -0.946 -4.469 -59.657 1.00 42.93 C
ATOM 24 P U A 21 -3.692 1.670 -61.232 1.00 60.47 P
ATOM 25 OP1 U A 21 -4.316 2.013 -59.929 1.00 57.17 O
ATOM 26 OP2 U A 21 -4.572 1.360 -62.383 1.00 58.00 O
ATOM 27 O5' U A 21 -2.641 2.795 -61.640 1.00 55.81 O
TER
ATOM 1 O3' U B 48 0.871 -5.139 -48.394 1.00 68.30 O
ATOM 2 P A B 49 2.482 -5.110 -48.475 1.00 78.72 P
ATOM 3 OP1 A B 49 2.955 -4.271 -47.349 1.00 79.48 O
ATOM 4 OP2 A B 49 2.848 -4.712 -49.856 1.00 69.20 O
ATOM 5 O5' A B 49 2.889 -6.629 -48.220 1.00 64.45 O
ATOM 6 C5' A B 49 4.221 -6.973 -47.865 1.00 64.70 C
ATOM 7 C4' A B 49 4.822 -7.958 -48.838 1.00 63.86 C
ATOM 8 O4' A B 49 3.957 -8.103 -49.993 1.00 66.31 O
ATOM 9 C3' A B 49 6.169 -7.572 -49.430 1.00 60.79 C
ATOM 10 O3' A B 49 7.255 -7.860 -48.569 1.00 58.48 O
ATOM 11 C2' A B 49 6.201 -8.357 -50.736 1.00 56.66 C
ATOM 12 O2' A B 49 6.547 -9.714 -50.498 1.00 58.37 O
ATOM 13 C1' A B 49 4.733 -8.300 -51.158 1.00 61.05 C
ATOM 14 N9 A B 49 4.466 -7.188 -52.090 1.00 55.64 N
ATOM 15 C8 A B 49 4.868 -5.878 -51.986 1.00 48.13 C
ATOM 16 N7 A B 49 4.461 -5.120 -52.976 1.00 46.01 N
ATOM 17 C5 A B 49 3.739 -5.989 -53.784 1.00 47.38 C
ATOM 18 C6 A B 49 3.043 -5.805 -54.993 1.00 44.77 C
ATOM 19 N6 A B 49 2.962 -4.637 -55.632 1.00 41.85 N
ATOM 20 N1 A B 49 2.433 -6.880 -55.539 1.00 42.88 N
ATOM 21 C2 A B 49 2.518 -8.052 -54.899 1.00 47.72 C
ATOM 22 N3 A B 49 3.136 -8.353 -53.760 1.00 49.09 N
ATOM 23 C4 A B 49 3.734 -7.265 -53.248 1.00 50.72 C
ATOM 24 P A B 50 8.753 -7.497 -49.014 1.00 65.33 P
ATOM 25 OP1 A B 50 9.589 -7.503 -47.787 1.00 63.21 O
ATOM 26 OP2 A B 50 8.680 -6.252 -49.823 1.00 60.77 O
ATOM 27 O5' A B 50 9.151 -8.725 -49.946 1.00 53.85 O
TER
Atoms:
OP1: (0.647,2.167,-56.244)
OP2: (-0.819,0.418,-55.108)
C3': (-2.117,0.198,-59.725)
C1': (-1.197,-1.967,-60.031)
C5': (0.134,0.874,-58.723)
O4': (-0.132,-1.043,-60.157)
C8: (0.160,-3.188,-58.266)
O2': (-3.573,-1.791,-59.526)
C6: (-0.345,-6.620,-58.836)
C5: (-0.240,-5.221,-58.732)
C4: (-0.946,-4.469,-59.657)
P: (0.226,0.754,-56.104)
C4': (-0.608,0.306,-59.905)
C2': (-2.299,-1.243,-59.258)
C2: (-1.745,-6.266,-60.643)
N1: (-1.121,-7.121,-59.822)
N3: (-1.727,-4.935,-60.648)
N6: (0.276,-7.474,-58.018)
N7: (0.456,-4.398,-57.857)
N9: (-0.683,-3.157,-59.348)
O5': (-0.172,0.166,-57.527)
O3': (-2.762,0.383,-60.985)
OP2: (-0.819,0.418,-55.108)
C3': (-2.117,0.198,-59.725)
C1': (-1.197,-1.967,-60.031)
C5': (0.134,0.874,-58.723)
O4': (-0.132,-1.043,-60.157)
C8: (0.160,-3.188,-58.266)
O2': (-3.573,-1.791,-59.526)
C6: (-0.345,-6.620,-58.836)
C5: (-0.240,-5.221,-58.732)
C4: (-0.946,-4.469,-59.657)
P: (0.226,0.754,-56.104)
C4': (-0.608,0.306,-59.905)
C2': (-2.299,-1.243,-59.258)
C2: (-1.745,-6.266,-60.643)
N1: (-1.121,-7.121,-59.822)
N3: (-1.727,-4.935,-60.648)
N6: (0.276,-7.474,-58.018)
N7: (0.456,-4.398,-57.857)
N9: (-0.683,-3.157,-59.348)
O5': (-0.172,0.166,-57.527)
O3': (-2.762,0.383,-60.985)
OP1: (2.955,-4.271,-47.349)
OP2: (2.848,-4.712,-49.856)
C3': (6.169,-7.572,-49.430)
C1': (4.733,-8.300,-51.158)
C5': (4.221,-6.973,-47.865)
O4': (3.957,-8.103,-49.993)
C8: (4.868,-5.878,-51.986)
O2': (6.547,-9.714,-50.498)
C6: (3.043,-5.805,-54.993)
C5: (3.739,-5.989,-53.784)
C4: (3.734,-7.265,-53.248)
P: (2.482,-5.110,-48.475)
C4': (4.822,-7.958,-48.838)
C2': (6.201,-8.357,-50.736)
C2: (2.518,-8.052,-54.899)
N1: (2.433,-6.880,-55.539)
N3: (3.136,-8.353,-53.760)
N6: (2.962,-4.637,-55.632)
N7: (4.461,-5.120,-52.976)
N9: (4.466,-7.188,-52.090)
O5': (2.889,-6.629,-48.220)
O3': (7.255,-7.860,-48.569)
OP2: (2.848,-4.712,-49.856)
C3': (6.169,-7.572,-49.430)
C1': (4.733,-8.300,-51.158)
C5': (4.221,-6.973,-47.865)
O4': (3.957,-8.103,-49.993)
C8: (4.868,-5.878,-51.986)
O2': (6.547,-9.714,-50.498)
C6: (3.043,-5.805,-54.993)
C5: (3.739,-5.989,-53.784)
C4: (3.734,-7.265,-53.248)
P: (2.482,-5.110,-48.475)
C4': (4.822,-7.958,-48.838)
C2': (6.201,-8.357,-50.736)
C2: (2.518,-8.052,-54.899)
N1: (2.433,-6.880,-55.539)
N3: (3.136,-8.353,-53.760)
N6: (2.962,-4.637,-55.632)
N7: (4.461,-5.120,-52.976)
N9: (4.466,-7.188,-52.090)
O5': (2.889,-6.629,-48.220)
O3': (7.255,-7.860,-48.569)
Image (generated by PyMOL):