Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12512:12548
Extra
PDB:
ATOM 1 O3' U A2511 22.768 -51.057 62.096 1.00 46.59 O
ATOM 2 P C A2512 23.297 -52.364 62.841 1.00 47.79 P
ATOM 3 OP1 C A2512 23.685 -53.330 61.811 1.00 48.07 O
ATOM 4 OP2 C A2512 22.276 -52.759 63.831 1.00 47.93 O
ATOM 5 O5' C A2512 24.583 -51.843 63.591 1.00 47.53 O
ATOM 6 C5' C A2512 25.744 -51.483 62.882 1.00 47.38 C
ATOM 7 C4' C A2512 26.371 -50.270 63.493 1.00 47.01 C
ATOM 8 O4' C A2512 25.565 -49.095 63.184 1.00 46.77 O
ATOM 9 C3' C A2512 26.449 -50.282 65.005 1.00 46.95 C
ATOM 10 O3' C A2512 27.560 -51.012 65.476 1.00 47.07 O
ATOM 11 C2' C A2512 26.508 -48.808 65.339 1.00 46.57 C
ATOM 12 O2' C A2512 27.820 -48.308 65.131 1.00 46.38 O
ATOM 13 C1' C A2512 25.581 -48.208 64.267 1.00 46.51 C
ATOM 14 N1 C A2512 24.212 -48.049 64.744 1.00 46.55 N
ATOM 15 C2 C A2512 23.926 -47.065 65.632 1.00 46.31 C
ATOM 16 O2 C A2512 24.843 -46.348 65.969 1.00 46.08 O
ATOM 17 N3 C A2512 22.678 -46.901 66.117 1.00 46.36 N
ATOM 18 C4 C A2512 21.685 -47.694 65.722 1.00 46.63 C
ATOM 19 N4 C A2512 20.476 -47.474 66.209 1.00 46.67 N
ATOM 20 C5 C A2512 21.942 -48.723 64.785 1.00 46.89 C
ATOM 21 C6 C A2512 23.212 -48.860 64.339 1.00 46.84 C
ATOM 22 P G A2513 27.600 -51.577 66.972 1.00 44.23 P
ATOM 23 OP1 G A2513 28.462 -52.767 66.959 1.00 44.50 O
ATOM 24 OP2 G A2513 26.214 -51.714 67.445 1.00 44.33 O
ATOM 25 O5' G A2513 28.320 -50.406 67.753 1.00 43.88 O
TER
ATOM 1 O3' U B2547 26.062 -39.444 72.416 1.00 40.00 O
ATOM 2 P G B2548 26.859 -38.865 71.160 1.00 38.84 P
ATOM 3 OP1 G B2548 27.717 -39.990 70.678 1.00 38.99 O
ATOM 4 OP2 G B2548 27.491 -37.614 71.612 1.00 38.59 O
ATOM 5 O5' G B2548 25.726 -38.519 70.089 1.00 38.83 O
ATOM 6 C5' G B2548 24.953 -39.541 69.470 1.00 39.07 C
ATOM 7 C4' G B2548 24.282 -39.060 68.196 1.00 39.03 C
ATOM 8 O4' G B2548 23.846 -40.227 67.449 1.00 39.28 O
ATOM 9 C3' G B2548 23.038 -38.186 68.385 1.00 38.96 C
ATOM 10 O3' G B2548 22.916 -37.245 67.314 1.00 38.82 O
ATOM 11 C2' G B2548 21.903 -39.202 68.311 1.00 39.23 C
ATOM 12 O2' G B2548 20.654 -38.675 67.926 1.00 39.25 O
ATOM 13 C1' G B2548 22.437 -40.217 67.293 1.00 39.39 C
ATOM 14 N9 G B2548 21.939 -41.593 67.522 1.00 39.69 N
ATOM 15 C8 G B2548 22.468 -42.622 68.297 1.00 39.85 C
ATOM 16 N7 G B2548 21.773 -43.712 68.295 1.00 40.13 N
ATOM 17 C5 G B2548 20.700 -43.385 67.491 1.00 40.16 C
ATOM 18 C6 G B2548 19.577 -44.154 67.104 1.00 40.43 C
ATOM 19 O6 G B2548 19.339 -45.337 67.439 1.00 40.71 O
ATOM 20 N1 G B2548 18.720 -43.440 66.256 1.00 40.38 N
ATOM 21 C2 G B2548 18.953 -42.170 65.830 1.00 40.11 C
ATOM 22 N2 G B2548 18.076 -41.641 65.003 1.00 40.11 N
ATOM 23 N3 G B2548 19.974 -41.427 66.177 1.00 39.86 N
ATOM 24 C4 G B2548 20.788 -42.102 67.006 1.00 39.90 C
ATOM 25 P C B2549 22.784 -35.665 67.637 1.00 42.80 P
ATOM 26 OP1 C B2549 22.176 -35.539 68.942 1.00 42.82 O
ATOM 27 OP2 C B2549 22.153 -35.011 66.478 1.00 42.76 O
ATOM 28 O5' C B2549 24.284 -35.217 67.737 1.00 42.61 O
TER
ATOM 2 P C A2512 23.297 -52.364 62.841 1.00 47.79 P
ATOM 3 OP1 C A2512 23.685 -53.330 61.811 1.00 48.07 O
ATOM 4 OP2 C A2512 22.276 -52.759 63.831 1.00 47.93 O
ATOM 5 O5' C A2512 24.583 -51.843 63.591 1.00 47.53 O
ATOM 6 C5' C A2512 25.744 -51.483 62.882 1.00 47.38 C
ATOM 7 C4' C A2512 26.371 -50.270 63.493 1.00 47.01 C
ATOM 8 O4' C A2512 25.565 -49.095 63.184 1.00 46.77 O
ATOM 9 C3' C A2512 26.449 -50.282 65.005 1.00 46.95 C
ATOM 10 O3' C A2512 27.560 -51.012 65.476 1.00 47.07 O
ATOM 11 C2' C A2512 26.508 -48.808 65.339 1.00 46.57 C
ATOM 12 O2' C A2512 27.820 -48.308 65.131 1.00 46.38 O
ATOM 13 C1' C A2512 25.581 -48.208 64.267 1.00 46.51 C
ATOM 14 N1 C A2512 24.212 -48.049 64.744 1.00 46.55 N
ATOM 15 C2 C A2512 23.926 -47.065 65.632 1.00 46.31 C
ATOM 16 O2 C A2512 24.843 -46.348 65.969 1.00 46.08 O
ATOM 17 N3 C A2512 22.678 -46.901 66.117 1.00 46.36 N
ATOM 18 C4 C A2512 21.685 -47.694 65.722 1.00 46.63 C
ATOM 19 N4 C A2512 20.476 -47.474 66.209 1.00 46.67 N
ATOM 20 C5 C A2512 21.942 -48.723 64.785 1.00 46.89 C
ATOM 21 C6 C A2512 23.212 -48.860 64.339 1.00 46.84 C
ATOM 22 P G A2513 27.600 -51.577 66.972 1.00 44.23 P
ATOM 23 OP1 G A2513 28.462 -52.767 66.959 1.00 44.50 O
ATOM 24 OP2 G A2513 26.214 -51.714 67.445 1.00 44.33 O
ATOM 25 O5' G A2513 28.320 -50.406 67.753 1.00 43.88 O
TER
ATOM 1 O3' U B2547 26.062 -39.444 72.416 1.00 40.00 O
ATOM 2 P G B2548 26.859 -38.865 71.160 1.00 38.84 P
ATOM 3 OP1 G B2548 27.717 -39.990 70.678 1.00 38.99 O
ATOM 4 OP2 G B2548 27.491 -37.614 71.612 1.00 38.59 O
ATOM 5 O5' G B2548 25.726 -38.519 70.089 1.00 38.83 O
ATOM 6 C5' G B2548 24.953 -39.541 69.470 1.00 39.07 C
ATOM 7 C4' G B2548 24.282 -39.060 68.196 1.00 39.03 C
ATOM 8 O4' G B2548 23.846 -40.227 67.449 1.00 39.28 O
ATOM 9 C3' G B2548 23.038 -38.186 68.385 1.00 38.96 C
ATOM 10 O3' G B2548 22.916 -37.245 67.314 1.00 38.82 O
ATOM 11 C2' G B2548 21.903 -39.202 68.311 1.00 39.23 C
ATOM 12 O2' G B2548 20.654 -38.675 67.926 1.00 39.25 O
ATOM 13 C1' G B2548 22.437 -40.217 67.293 1.00 39.39 C
ATOM 14 N9 G B2548 21.939 -41.593 67.522 1.00 39.69 N
ATOM 15 C8 G B2548 22.468 -42.622 68.297 1.00 39.85 C
ATOM 16 N7 G B2548 21.773 -43.712 68.295 1.00 40.13 N
ATOM 17 C5 G B2548 20.700 -43.385 67.491 1.00 40.16 C
ATOM 18 C6 G B2548 19.577 -44.154 67.104 1.00 40.43 C
ATOM 19 O6 G B2548 19.339 -45.337 67.439 1.00 40.71 O
ATOM 20 N1 G B2548 18.720 -43.440 66.256 1.00 40.38 N
ATOM 21 C2 G B2548 18.953 -42.170 65.830 1.00 40.11 C
ATOM 22 N2 G B2548 18.076 -41.641 65.003 1.00 40.11 N
ATOM 23 N3 G B2548 19.974 -41.427 66.177 1.00 39.86 N
ATOM 24 C4 G B2548 20.788 -42.102 67.006 1.00 39.90 C
ATOM 25 P C B2549 22.784 -35.665 67.637 1.00 42.80 P
ATOM 26 OP1 C B2549 22.176 -35.539 68.942 1.00 42.82 O
ATOM 27 OP2 C B2549 22.153 -35.011 66.478 1.00 42.76 O
ATOM 28 O5' C B2549 24.284 -35.217 67.737 1.00 42.61 O
TER
Atoms:
C2: (23.926,-47.065,65.632)
OP1: (23.685,-53.330,61.811)
OP2: (22.276,-52.759,63.831)
C4: (21.685,-47.694,65.722)
O5': (24.583,-51.843,63.591)
C3': (26.449,-50.282,65.005)
C1': (25.581,-48.208,64.267)
O4': (25.565,-49.095,63.184)
C5': (25.744,-51.483,62.882)
P: (23.297,-52.364,62.841)
O2: (24.843,-46.348,65.969)
C4': (26.371,-50.270,63.493)
C2': (26.508,-48.808,65.339)
O2': (27.820,-48.308,65.131)
N1: (24.212,-48.049,64.744)
N3: (22.678,-46.901,66.117)
N4: (20.476,-47.474,66.209)
C6: (23.212,-48.860,64.339)
C5: (21.942,-48.723,64.785)
O3': (27.560,-51.012,65.476)
OP1: (23.685,-53.330,61.811)
OP2: (22.276,-52.759,63.831)
C4: (21.685,-47.694,65.722)
O5': (24.583,-51.843,63.591)
C3': (26.449,-50.282,65.005)
C1': (25.581,-48.208,64.267)
O4': (25.565,-49.095,63.184)
C5': (25.744,-51.483,62.882)
P: (23.297,-52.364,62.841)
O2: (24.843,-46.348,65.969)
C4': (26.371,-50.270,63.493)
C2': (26.508,-48.808,65.339)
O2': (27.820,-48.308,65.131)
N1: (24.212,-48.049,64.744)
N3: (22.678,-46.901,66.117)
N4: (20.476,-47.474,66.209)
C6: (23.212,-48.860,64.339)
C5: (21.942,-48.723,64.785)
O3': (27.560,-51.012,65.476)
OP1: (27.717,-39.990,70.678)
OP2: (27.491,-37.614,71.612)
C3': (23.038,-38.186,68.385)
C1': (22.437,-40.217,67.293)
C5': (24.953,-39.541,69.470)
O6: (19.339,-45.337,67.439)
O4': (23.846,-40.227,67.449)
C8: (22.468,-42.622,68.297)
C2: (18.953,-42.170,65.830)
C6: (19.577,-44.154,67.104)
C5: (20.700,-43.385,67.491)
C4: (20.788,-42.102,67.006)
P: (26.859,-38.865,71.160)
C4': (24.282,-39.060,68.196)
C2': (21.903,-39.202,68.311)
O2': (20.654,-38.675,67.926)
N1: (18.720,-43.440,66.256)
N2: (18.076,-41.641,65.003)
N3: (19.974,-41.427,66.177)
N7: (21.773,-43.712,68.295)
N9: (21.939,-41.593,67.522)
O5': (25.726,-38.519,70.089)
O3': (22.916,-37.245,67.314)
OP2: (27.491,-37.614,71.612)
C3': (23.038,-38.186,68.385)
C1': (22.437,-40.217,67.293)
C5': (24.953,-39.541,69.470)
O6: (19.339,-45.337,67.439)
O4': (23.846,-40.227,67.449)
C8: (22.468,-42.622,68.297)
C2: (18.953,-42.170,65.830)
C6: (19.577,-44.154,67.104)
C5: (20.700,-43.385,67.491)
C4: (20.788,-42.102,67.006)
P: (26.859,-38.865,71.160)
C4': (24.282,-39.060,68.196)
C2': (21.903,-39.202,68.311)
O2': (20.654,-38.675,67.926)
N1: (18.720,-43.440,66.256)
N2: (18.076,-41.641,65.003)
N3: (19.974,-41.427,66.177)
N7: (21.773,-43.712,68.295)
N9: (21.939,-41.593,67.522)
O5': (25.726,-38.519,70.089)
O3': (22.916,-37.245,67.314)
Image (generated by PyMOL):