Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A517:A600
Extra
PDB:
ATOM 1 O3' G A 516 10.559 140.329 94.864 1.00 54.78 O
ATOM 2 P G A 517 10.767 140.511 96.441 1.00 55.06 P
ATOM 3 OP1 G A 517 9.484 140.216 97.142 1.00 54.60 O
ATOM 4 OP2 G A 517 11.412 141.829 96.628 1.00 53.24 O
ATOM 5 O5' G A 517 11.822 139.380 96.815 1.00 53.24 O
ATOM 6 C5' G A 517 11.453 138.000 96.756 1.00 50.84 C
ATOM 7 C4' G A 517 12.666 137.119 96.937 1.00 49.61 C
ATOM 8 O4' G A 517 13.585 137.282 95.824 1.00 48.44 O
ATOM 9 C3' G A 517 13.566 137.342 98.143 1.00 47.54 C
ATOM 10 O3' G A 517 12.994 136.845 99.345 1.00 47.18 O
ATOM 11 C2' G A 517 14.780 136.538 97.707 1.00 46.55 C
ATOM 12 O2' G A 517 14.534 135.149 97.681 1.00 46.22 O
ATOM 13 C1' G A 517 14.899 136.991 96.260 1.00 46.75 C
ATOM 14 N9 G A 517 15.689 138.213 96.219 1.00 47.17 N
ATOM 15 C8 G A 517 15.250 139.513 96.294 1.00 46.68 C
ATOM 16 N7 G A 517 16.222 140.381 96.262 1.00 47.09 N
ATOM 17 C5 G A 517 17.367 139.606 96.154 1.00 47.53 C
ATOM 18 C6 G A 517 18.721 139.985 96.079 1.00 47.96 C
ATOM 19 O6 G A 517 19.194 141.123 96.085 1.00 48.30 O
ATOM 20 N1 G A 517 19.562 138.876 95.983 1.00 46.53 N
ATOM 21 C2 G A 517 19.144 137.572 95.957 1.00 47.21 C
ATOM 22 N2 G A 517 20.103 136.644 95.836 1.00 47.43 N
ATOM 23 N3 G A 517 17.880 137.205 96.036 1.00 47.35 N
ATOM 24 C4 G A 517 17.052 138.268 96.126 1.00 47.51 C
ATOM 25 P C A 518 13.217 137.630 100.737 1.00 47.76 P
ATOM 26 OP1 C A 518 12.322 136.921 101.690 1.00 48.08 O
ATOM 27 OP2 C A 518 13.116 139.108 100.598 1.00 47.22 O
ATOM 28 O5' C A 518 14.725 137.314 101.134 1.00 47.72 O
TER
ATOM 1 O3' U B 599 19.339 133.675 95.664 1.00 45.67 O
ATOM 2 P U B 600 20.194 132.733 96.648 1.00 47.94 P
ATOM 3 OP1 U B 600 21.305 133.556 97.193 1.00 47.76 O
ATOM 4 OP2 U B 600 20.502 131.469 95.945 1.00 48.35 O
ATOM 5 O5' U B 600 19.194 132.428 97.844 1.00 47.24 O
ATOM 6 C5' U B 600 18.886 133.461 98.794 1.00 48.07 C
ATOM 7 C4' U B 600 17.782 133.028 99.719 1.00 47.41 C
ATOM 8 O4' U B 600 16.589 132.796 98.940 1.00 45.58 O
ATOM 9 C3' U B 600 17.958 131.736 100.504 1.00 46.64 C
ATOM 10 O3' U B 600 18.755 131.921 101.676 1.00 46.56 O
ATOM 11 C2' U B 600 16.516 131.441 100.878 1.00 46.27 C
ATOM 12 O2' U B 600 16.066 132.322 101.885 1.00 47.02 O
ATOM 13 C1' U B 600 15.792 131.829 99.589 1.00 44.70 C
ATOM 14 N1 U B 600 15.612 130.683 98.693 1.00 43.67 N
ATOM 15 C2 U B 600 14.544 129.859 98.950 1.00 44.50 C
ATOM 16 O2 U B 600 13.763 130.055 99.867 1.00 44.40 O
ATOM 17 N3 U B 600 14.421 128.793 98.103 1.00 45.19 N
ATOM 18 C4 U B 600 15.239 128.474 97.048 1.00 45.16 C
ATOM 19 O4 U B 600 15.017 127.447 96.413 1.00 45.47 O
ATOM 20 C5 U B 600 16.325 129.377 96.836 1.00 44.14 C
ATOM 21 C6 U B 600 16.473 130.426 97.647 1.00 43.35 C
ATOM 22 P C B 601 19.469 130.655 102.379 1.00 47.38 P
ATOM 23 OP1 C B 601 20.431 131.229 103.361 1.00 45.75 O
ATOM 24 OP2 C B 601 19.955 129.704 101.349 1.00 45.77 O
ATOM 25 O5' C B 601 18.299 129.963 103.206 1.00 46.34 O
TER
ATOM 2 P G A 517 10.767 140.511 96.441 1.00 55.06 P
ATOM 3 OP1 G A 517 9.484 140.216 97.142 1.00 54.60 O
ATOM 4 OP2 G A 517 11.412 141.829 96.628 1.00 53.24 O
ATOM 5 O5' G A 517 11.822 139.380 96.815 1.00 53.24 O
ATOM 6 C5' G A 517 11.453 138.000 96.756 1.00 50.84 C
ATOM 7 C4' G A 517 12.666 137.119 96.937 1.00 49.61 C
ATOM 8 O4' G A 517 13.585 137.282 95.824 1.00 48.44 O
ATOM 9 C3' G A 517 13.566 137.342 98.143 1.00 47.54 C
ATOM 10 O3' G A 517 12.994 136.845 99.345 1.00 47.18 O
ATOM 11 C2' G A 517 14.780 136.538 97.707 1.00 46.55 C
ATOM 12 O2' G A 517 14.534 135.149 97.681 1.00 46.22 O
ATOM 13 C1' G A 517 14.899 136.991 96.260 1.00 46.75 C
ATOM 14 N9 G A 517 15.689 138.213 96.219 1.00 47.17 N
ATOM 15 C8 G A 517 15.250 139.513 96.294 1.00 46.68 C
ATOM 16 N7 G A 517 16.222 140.381 96.262 1.00 47.09 N
ATOM 17 C5 G A 517 17.367 139.606 96.154 1.00 47.53 C
ATOM 18 C6 G A 517 18.721 139.985 96.079 1.00 47.96 C
ATOM 19 O6 G A 517 19.194 141.123 96.085 1.00 48.30 O
ATOM 20 N1 G A 517 19.562 138.876 95.983 1.00 46.53 N
ATOM 21 C2 G A 517 19.144 137.572 95.957 1.00 47.21 C
ATOM 22 N2 G A 517 20.103 136.644 95.836 1.00 47.43 N
ATOM 23 N3 G A 517 17.880 137.205 96.036 1.00 47.35 N
ATOM 24 C4 G A 517 17.052 138.268 96.126 1.00 47.51 C
ATOM 25 P C A 518 13.217 137.630 100.737 1.00 47.76 P
ATOM 26 OP1 C A 518 12.322 136.921 101.690 1.00 48.08 O
ATOM 27 OP2 C A 518 13.116 139.108 100.598 1.00 47.22 O
ATOM 28 O5' C A 518 14.725 137.314 101.134 1.00 47.72 O
TER
ATOM 1 O3' U B 599 19.339 133.675 95.664 1.00 45.67 O
ATOM 2 P U B 600 20.194 132.733 96.648 1.00 47.94 P
ATOM 3 OP1 U B 600 21.305 133.556 97.193 1.00 47.76 O
ATOM 4 OP2 U B 600 20.502 131.469 95.945 1.00 48.35 O
ATOM 5 O5' U B 600 19.194 132.428 97.844 1.00 47.24 O
ATOM 6 C5' U B 600 18.886 133.461 98.794 1.00 48.07 C
ATOM 7 C4' U B 600 17.782 133.028 99.719 1.00 47.41 C
ATOM 8 O4' U B 600 16.589 132.796 98.940 1.00 45.58 O
ATOM 9 C3' U B 600 17.958 131.736 100.504 1.00 46.64 C
ATOM 10 O3' U B 600 18.755 131.921 101.676 1.00 46.56 O
ATOM 11 C2' U B 600 16.516 131.441 100.878 1.00 46.27 C
ATOM 12 O2' U B 600 16.066 132.322 101.885 1.00 47.02 O
ATOM 13 C1' U B 600 15.792 131.829 99.589 1.00 44.70 C
ATOM 14 N1 U B 600 15.612 130.683 98.693 1.00 43.67 N
ATOM 15 C2 U B 600 14.544 129.859 98.950 1.00 44.50 C
ATOM 16 O2 U B 600 13.763 130.055 99.867 1.00 44.40 O
ATOM 17 N3 U B 600 14.421 128.793 98.103 1.00 45.19 N
ATOM 18 C4 U B 600 15.239 128.474 97.048 1.00 45.16 C
ATOM 19 O4 U B 600 15.017 127.447 96.413 1.00 45.47 O
ATOM 20 C5 U B 600 16.325 129.377 96.836 1.00 44.14 C
ATOM 21 C6 U B 600 16.473 130.426 97.647 1.00 43.35 C
ATOM 22 P C B 601 19.469 130.655 102.379 1.00 47.38 P
ATOM 23 OP1 C B 601 20.431 131.229 103.361 1.00 45.75 O
ATOM 24 OP2 C B 601 19.955 129.704 101.349 1.00 45.77 O
ATOM 25 O5' C B 601 18.299 129.963 103.206 1.00 46.34 O
TER
Atoms:
OP1: (9.484,140.216,97.142)
OP2: (11.412,141.829,96.628)
C3': (13.566,137.342,98.143)
C1': (14.899,136.991,96.260)
C5': (11.453,138.000,96.756)
O6: (19.194,141.123,96.085)
O4': (13.585,137.282,95.824)
C8: (15.250,139.513,96.294)
C2: (19.144,137.572,95.957)
C6: (18.721,139.985,96.079)
C5: (17.367,139.606,96.154)
C4: (17.052,138.268,96.126)
P: (10.767,140.511,96.441)
C4': (12.666,137.119,96.937)
C2': (14.780,136.538,97.707)
O2': (14.534,135.149,97.681)
N1: (19.562,138.876,95.983)
N2: (20.103,136.644,95.836)
N3: (17.880,137.205,96.036)
N7: (16.222,140.381,96.262)
N9: (15.689,138.213,96.219)
O5': (11.822,139.380,96.815)
O3': (12.994,136.845,99.345)
OP2: (11.412,141.829,96.628)
C3': (13.566,137.342,98.143)
C1': (14.899,136.991,96.260)
C5': (11.453,138.000,96.756)
O6: (19.194,141.123,96.085)
O4': (13.585,137.282,95.824)
C8: (15.250,139.513,96.294)
C2: (19.144,137.572,95.957)
C6: (18.721,139.985,96.079)
C5: (17.367,139.606,96.154)
C4: (17.052,138.268,96.126)
P: (10.767,140.511,96.441)
C4': (12.666,137.119,96.937)
C2': (14.780,136.538,97.707)
O2': (14.534,135.149,97.681)
N1: (19.562,138.876,95.983)
N2: (20.103,136.644,95.836)
N3: (17.880,137.205,96.036)
N7: (16.222,140.381,96.262)
N9: (15.689,138.213,96.219)
O5': (11.822,139.380,96.815)
O3': (12.994,136.845,99.345)
C4: (15.239,128.474,97.048)
N3: (14.421,128.793,98.103)
OP1: (21.305,133.556,97.193)
OP2: (20.502,131.469,95.945)
C2: (14.544,129.859,98.950)
C1': (15.792,131.829,99.589)
C3': (17.958,131.736,100.504)
O5': (19.194,132.428,97.844)
O4': (16.589,132.796,98.940)
C5': (18.886,133.461,98.794)
P: (20.194,132.733,96.648)
C4': (17.782,133.028,99.719)
C2': (16.516,131.441,100.878)
O2': (16.066,132.322,101.885)
N1: (15.612,130.683,98.693)
O4: (15.017,127.447,96.413)
O2: (13.763,130.055,99.867)
C6: (16.473,130.426,97.647)
C5: (16.325,129.377,96.836)
O3': (18.755,131.921,101.676)
N3: (14.421,128.793,98.103)
OP1: (21.305,133.556,97.193)
OP2: (20.502,131.469,95.945)
C2: (14.544,129.859,98.950)
C1': (15.792,131.829,99.589)
C3': (17.958,131.736,100.504)
O5': (19.194,132.428,97.844)
O4': (16.589,132.796,98.940)
C5': (18.886,133.461,98.794)
P: (20.194,132.733,96.648)
C4': (17.782,133.028,99.719)
C2': (16.516,131.441,100.878)
O2': (16.066,132.322,101.885)
N1: (15.612,130.683,98.693)
O4: (15.017,127.447,96.413)
O2: (13.763,130.055,99.867)
C6: (16.473,130.426,97.647)
C5: (16.325,129.377,96.836)
O3': (18.755,131.921,101.676)
Image (generated by PyMOL):