Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0517:0600
Extra
PDB:
ATOM 1 O3' G A 516 10.418 140.373 94.599 1.00 51.29 O
ATOM 2 P G A 517 10.632 140.591 96.178 1.00 52.53 P
ATOM 3 OP1 G A 517 9.331 140.294 96.832 1.00 53.99 O
ATOM 4 OP2 G A 517 11.279 141.908 96.415 1.00 51.01 O
ATOM 5 O5' G A 517 11.660 139.442 96.584 1.00 51.07 O
ATOM 6 C5' G A 517 11.274 138.059 96.525 1.00 48.04 C
ATOM 7 C4' G A 517 12.481 137.160 96.682 1.00 47.56 C
ATOM 8 O4' G A 517 13.400 137.358 95.572 1.00 46.96 O
ATOM 9 C3' G A 517 13.369 137.398 97.892 1.00 46.43 C
ATOM 10 O3' G A 517 12.832 136.885 99.102 1.00 45.66 O
ATOM 11 C2' G A 517 14.636 136.673 97.473 1.00 45.79 C
ATOM 12 O2' G A 517 14.528 135.268 97.559 1.00 46.14 O
ATOM 13 C1' G A 517 14.727 137.086 96.005 1.00 46.32 C
ATOM 14 N9 G A 517 15.524 138.305 95.915 1.00 45.16 N
ATOM 15 C8 G A 517 15.080 139.605 95.941 1.00 45.57 C
ATOM 16 N7 G A 517 16.053 140.476 95.956 1.00 46.34 N
ATOM 17 C5 G A 517 17.206 139.704 95.913 1.00 45.54 C
ATOM 18 C6 G A 517 18.570 140.087 95.928 1.00 45.07 C
ATOM 19 O6 G A 517 19.049 141.224 96.000 1.00 45.61 O
ATOM 20 N1 G A 517 19.412 138.983 95.859 1.00 44.46 N
ATOM 21 C2 G A 517 18.996 137.676 95.787 1.00 45.20 C
ATOM 22 N2 G A 517 19.959 136.744 95.704 1.00 44.77 N
ATOM 23 N3 G A 517 17.730 137.307 95.790 1.00 45.07 N
ATOM 24 C4 G A 517 16.895 138.365 95.856 1.00 45.27 C
ATOM 25 P C A 518 13.063 137.690 100.477 1.00 45.08 P
ATOM 26 OP1 C A 518 12.181 137.047 101.496 1.00 45.01 O
ATOM 27 OP2 C A 518 12.948 139.152 100.220 1.00 45.39 O
ATOM 28 O5' C A 518 14.583 137.393 100.844 1.00 44.50 O
TER
ATOM 1 O3' U B 599 19.172 133.710 95.271 1.00 45.41 O
ATOM 2 P U B 600 20.009 132.716 96.220 1.00 44.91 P
ATOM 3 OP1 U B 600 21.172 133.512 96.687 1.00 46.46 O
ATOM 4 OP2 U B 600 20.240 131.427 95.529 1.00 44.01 O
ATOM 5 O5' U B 600 19.052 132.460 97.469 1.00 46.49 O
ATOM 6 C5' U B 600 18.863 133.482 98.468 1.00 47.40 C
ATOM 7 C4' U B 600 17.749 133.104 99.416 1.00 48.85 C
ATOM 8 O4' U B 600 16.521 132.892 98.672 1.00 48.92 O
ATOM 9 C3' U B 600 17.918 131.809 100.191 1.00 48.66 C
ATOM 10 O3' U B 600 18.747 131.971 101.328 1.00 48.26 O
ATOM 11 C2' U B 600 16.486 131.492 100.593 1.00 48.31 C
ATOM 12 O2' U B 600 16.039 132.251 101.700 1.00 48.56 O
ATOM 13 C1' U B 600 15.731 131.914 99.333 1.00 48.47 C
ATOM 14 N1 U B 600 15.536 130.772 98.432 1.00 47.98 N
ATOM 15 C2 U B 600 14.397 130.014 98.612 1.00 48.08 C
ATOM 16 O2 U B 600 13.554 130.277 99.453 1.00 47.38 O
ATOM 17 N3 U B 600 14.282 128.937 97.773 1.00 48.88 N
ATOM 18 C4 U B 600 15.165 128.555 96.786 1.00 48.38 C
ATOM 19 O4 U B 600 14.896 127.584 96.077 1.00 48.80 O
ATOM 20 C5 U B 600 16.313 129.397 96.655 1.00 47.42 C
ATOM 21 C6 U B 600 16.455 130.451 97.459 1.00 47.31 C
ATOM 22 P C B 601 19.293 130.675 102.098 1.00 49.30 P
ATOM 23 OP1 C B 601 20.227 131.170 103.144 1.00 50.34 O
ATOM 24 OP2 C B 601 19.760 129.676 101.101 1.00 46.97 O
ATOM 25 O5' C B 601 18.005 130.093 102.828 1.00 49.94 O
TER
ATOM 2 P G A 517 10.632 140.591 96.178 1.00 52.53 P
ATOM 3 OP1 G A 517 9.331 140.294 96.832 1.00 53.99 O
ATOM 4 OP2 G A 517 11.279 141.908 96.415 1.00 51.01 O
ATOM 5 O5' G A 517 11.660 139.442 96.584 1.00 51.07 O
ATOM 6 C5' G A 517 11.274 138.059 96.525 1.00 48.04 C
ATOM 7 C4' G A 517 12.481 137.160 96.682 1.00 47.56 C
ATOM 8 O4' G A 517 13.400 137.358 95.572 1.00 46.96 O
ATOM 9 C3' G A 517 13.369 137.398 97.892 1.00 46.43 C
ATOM 10 O3' G A 517 12.832 136.885 99.102 1.00 45.66 O
ATOM 11 C2' G A 517 14.636 136.673 97.473 1.00 45.79 C
ATOM 12 O2' G A 517 14.528 135.268 97.559 1.00 46.14 O
ATOM 13 C1' G A 517 14.727 137.086 96.005 1.00 46.32 C
ATOM 14 N9 G A 517 15.524 138.305 95.915 1.00 45.16 N
ATOM 15 C8 G A 517 15.080 139.605 95.941 1.00 45.57 C
ATOM 16 N7 G A 517 16.053 140.476 95.956 1.00 46.34 N
ATOM 17 C5 G A 517 17.206 139.704 95.913 1.00 45.54 C
ATOM 18 C6 G A 517 18.570 140.087 95.928 1.00 45.07 C
ATOM 19 O6 G A 517 19.049 141.224 96.000 1.00 45.61 O
ATOM 20 N1 G A 517 19.412 138.983 95.859 1.00 44.46 N
ATOM 21 C2 G A 517 18.996 137.676 95.787 1.00 45.20 C
ATOM 22 N2 G A 517 19.959 136.744 95.704 1.00 44.77 N
ATOM 23 N3 G A 517 17.730 137.307 95.790 1.00 45.07 N
ATOM 24 C4 G A 517 16.895 138.365 95.856 1.00 45.27 C
ATOM 25 P C A 518 13.063 137.690 100.477 1.00 45.08 P
ATOM 26 OP1 C A 518 12.181 137.047 101.496 1.00 45.01 O
ATOM 27 OP2 C A 518 12.948 139.152 100.220 1.00 45.39 O
ATOM 28 O5' C A 518 14.583 137.393 100.844 1.00 44.50 O
TER
ATOM 1 O3' U B 599 19.172 133.710 95.271 1.00 45.41 O
ATOM 2 P U B 600 20.009 132.716 96.220 1.00 44.91 P
ATOM 3 OP1 U B 600 21.172 133.512 96.687 1.00 46.46 O
ATOM 4 OP2 U B 600 20.240 131.427 95.529 1.00 44.01 O
ATOM 5 O5' U B 600 19.052 132.460 97.469 1.00 46.49 O
ATOM 6 C5' U B 600 18.863 133.482 98.468 1.00 47.40 C
ATOM 7 C4' U B 600 17.749 133.104 99.416 1.00 48.85 C
ATOM 8 O4' U B 600 16.521 132.892 98.672 1.00 48.92 O
ATOM 9 C3' U B 600 17.918 131.809 100.191 1.00 48.66 C
ATOM 10 O3' U B 600 18.747 131.971 101.328 1.00 48.26 O
ATOM 11 C2' U B 600 16.486 131.492 100.593 1.00 48.31 C
ATOM 12 O2' U B 600 16.039 132.251 101.700 1.00 48.56 O
ATOM 13 C1' U B 600 15.731 131.914 99.333 1.00 48.47 C
ATOM 14 N1 U B 600 15.536 130.772 98.432 1.00 47.98 N
ATOM 15 C2 U B 600 14.397 130.014 98.612 1.00 48.08 C
ATOM 16 O2 U B 600 13.554 130.277 99.453 1.00 47.38 O
ATOM 17 N3 U B 600 14.282 128.937 97.773 1.00 48.88 N
ATOM 18 C4 U B 600 15.165 128.555 96.786 1.00 48.38 C
ATOM 19 O4 U B 600 14.896 127.584 96.077 1.00 48.80 O
ATOM 20 C5 U B 600 16.313 129.397 96.655 1.00 47.42 C
ATOM 21 C6 U B 600 16.455 130.451 97.459 1.00 47.31 C
ATOM 22 P C B 601 19.293 130.675 102.098 1.00 49.30 P
ATOM 23 OP1 C B 601 20.227 131.170 103.144 1.00 50.34 O
ATOM 24 OP2 C B 601 19.760 129.676 101.101 1.00 46.97 O
ATOM 25 O5' C B 601 18.005 130.093 102.828 1.00 49.94 O
TER
Atoms:
OP1: (9.331,140.294,96.832)
OP2: (11.279,141.908,96.415)
C3': (13.369,137.398,97.892)
C1': (14.727,137.086,96.005)
C5': (11.274,138.059,96.525)
O6: (19.049,141.224,96.000)
O4': (13.400,137.358,95.572)
C8: (15.080,139.605,95.941)
C2: (18.996,137.676,95.787)
C6: (18.570,140.087,95.928)
C5: (17.206,139.704,95.913)
C4: (16.895,138.365,95.856)
P: (10.632,140.591,96.178)
C4': (12.481,137.160,96.682)
C2': (14.636,136.673,97.473)
O2': (14.528,135.268,97.559)
N1: (19.412,138.983,95.859)
N2: (19.959,136.744,95.704)
N3: (17.730,137.307,95.790)
N7: (16.053,140.476,95.956)
N9: (15.524,138.305,95.915)
O5': (11.660,139.442,96.584)
O3': (12.832,136.885,99.102)
OP2: (11.279,141.908,96.415)
C3': (13.369,137.398,97.892)
C1': (14.727,137.086,96.005)
C5': (11.274,138.059,96.525)
O6: (19.049,141.224,96.000)
O4': (13.400,137.358,95.572)
C8: (15.080,139.605,95.941)
C2: (18.996,137.676,95.787)
C6: (18.570,140.087,95.928)
C5: (17.206,139.704,95.913)
C4: (16.895,138.365,95.856)
P: (10.632,140.591,96.178)
C4': (12.481,137.160,96.682)
C2': (14.636,136.673,97.473)
O2': (14.528,135.268,97.559)
N1: (19.412,138.983,95.859)
N2: (19.959,136.744,95.704)
N3: (17.730,137.307,95.790)
N7: (16.053,140.476,95.956)
N9: (15.524,138.305,95.915)
O5': (11.660,139.442,96.584)
O3': (12.832,136.885,99.102)
C4: (15.165,128.555,96.786)
N3: (14.282,128.937,97.773)
OP1: (21.172,133.512,96.687)
OP2: (20.240,131.427,95.529)
C2: (14.397,130.014,98.612)
C1': (15.731,131.914,99.333)
C3': (17.918,131.809,100.191)
O5': (19.052,132.460,97.469)
O4': (16.521,132.892,98.672)
C5': (18.863,133.482,98.468)
P: (20.009,132.716,96.220)
C4': (17.749,133.104,99.416)
C2': (16.486,131.492,100.593)
O2': (16.039,132.251,101.700)
N1: (15.536,130.772,98.432)
O4: (14.896,127.584,96.077)
O2: (13.554,130.277,99.453)
C6: (16.455,130.451,97.459)
C5: (16.313,129.397,96.655)
O3': (18.747,131.971,101.328)
N3: (14.282,128.937,97.773)
OP1: (21.172,133.512,96.687)
OP2: (20.240,131.427,95.529)
C2: (14.397,130.014,98.612)
C1': (15.731,131.914,99.333)
C3': (17.918,131.809,100.191)
O5': (19.052,132.460,97.469)
O4': (16.521,132.892,98.672)
C5': (18.863,133.482,98.468)
P: (20.009,132.716,96.220)
C4': (17.749,133.104,99.416)
C2': (16.486,131.492,100.593)
O2': (16.039,132.251,101.700)
N1: (15.536,130.772,98.432)
O4: (14.896,127.584,96.077)
O2: (13.554,130.277,99.453)
C6: (16.455,130.451,97.459)
C5: (16.313,129.397,96.655)
O3': (18.747,131.971,101.328)
Image (generated by PyMOL):