Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0517:0600
Extra
PDB:
ATOM 1 O3' G A 516 10.562 140.522 94.830 1.00 62.49 O
ATOM 2 P G A 517 10.828 140.712 96.407 1.00 64.11 P
ATOM 3 OP1 G A 517 9.553 140.407 97.117 1.00 63.98 O
ATOM 4 OP2 G A 517 11.493 142.023 96.635 1.00 63.68 O
ATOM 5 O5' G A 517 11.876 139.563 96.755 1.00 62.85 O
ATOM 6 C5' G A 517 11.480 138.180 96.719 1.00 60.20 C
ATOM 7 C4' G A 517 12.677 137.279 96.906 1.00 58.05 C
ATOM 8 O4' G A 517 13.608 137.453 95.803 1.00 57.38 O
ATOM 9 C3' G A 517 13.553 137.525 98.123 1.00 56.07 C
ATOM 10 O3' G A 517 12.989 137.029 99.326 1.00 55.81 O
ATOM 11 C2' G A 517 14.810 136.774 97.718 1.00 55.70 C
ATOM 12 O2' G A 517 14.652 135.371 97.764 1.00 56.51 O
ATOM 13 C1' G A 517 14.931 137.201 96.258 1.00 56.12 C
ATOM 14 N9 G A 517 15.694 138.443 96.210 1.00 55.83 N
ATOM 15 C8 G A 517 15.208 139.727 96.247 1.00 56.08 C
ATOM 16 N7 G A 517 16.151 140.627 96.283 1.00 56.92 N
ATOM 17 C5 G A 517 17.328 139.893 96.250 1.00 55.74 C
ATOM 18 C6 G A 517 18.678 140.320 96.280 1.00 56.15 C
ATOM 19 O6 G A 517 19.120 141.472 96.372 1.00 55.53 O
ATOM 20 N1 G A 517 19.554 139.245 96.204 1.00 55.89 N
ATOM 21 C2 G A 517 19.178 137.926 96.124 1.00 56.39 C
ATOM 22 N2 G A 517 20.166 137.023 96.035 1.00 57.19 N
ATOM 23 N3 G A 517 17.925 137.518 96.123 1.00 56.07 N
ATOM 24 C4 G A 517 17.060 138.546 96.182 1.00 55.42 C
ATOM 25 P C A 518 13.233 137.817 100.707 1.00 55.76 P
ATOM 26 OP1 C A 518 12.408 137.092 101.703 1.00 57.31 O
ATOM 27 OP2 C A 518 13.030 139.273 100.503 1.00 56.12 O
ATOM 28 O5' C A 518 14.773 137.577 101.052 1.00 56.23 O
TER
ATOM 1 O3' U B 599 19.423 133.922 95.631 1.00 54.90 O
ATOM 2 P U B 600 20.248 132.938 96.594 1.00 56.40 P
ATOM 3 OP1 U B 600 21.381 133.761 97.096 1.00 57.86 O
ATOM 4 OP2 U B 600 20.530 131.685 95.861 1.00 54.80 O
ATOM 5 O5' U B 600 19.250 132.637 97.805 1.00 55.14 O
ATOM 6 C5' U B 600 19.012 133.639 98.813 1.00 56.09 C
ATOM 7 C4' U B 600 17.878 133.240 99.731 1.00 56.50 C
ATOM 8 O4' U B 600 16.663 133.053 98.962 1.00 56.58 O
ATOM 9 C3' U B 600 18.014 131.946 100.517 1.00 56.63 C
ATOM 10 O3' U B 600 18.806 132.118 101.687 1.00 57.13 O
ATOM 11 C2' U B 600 16.566 131.655 100.879 1.00 55.82 C
ATOM 12 O2' U B 600 16.112 132.470 101.943 1.00 55.81 O
ATOM 13 C1' U B 600 15.853 132.071 99.591 1.00 55.60 C
ATOM 14 N1 U B 600 15.690 130.938 98.670 1.00 53.77 N
ATOM 15 C2 U B 600 14.612 130.097 98.866 1.00 52.58 C
ATOM 16 O2 U B 600 13.775 130.277 99.734 1.00 51.46 O
ATOM 17 N3 U B 600 14.549 129.035 98.005 1.00 51.87 N
ATOM 18 C4 U B 600 15.422 128.745 96.983 1.00 52.17 C
ATOM 19 O4 U B 600 15.236 127.746 96.297 1.00 53.03 O
ATOM 20 C5 U B 600 16.491 129.673 96.830 1.00 52.65 C
ATOM 21 C6 U B 600 16.588 130.710 97.656 1.00 53.68 C
ATOM 22 P C B 601 19.422 130.832 102.434 1.00 57.91 P
ATOM 23 OP1 C B 601 20.368 131.370 103.442 1.00 57.60 O
ATOM 24 OP2 C B 601 19.895 129.846 101.429 1.00 55.92 O
ATOM 25 O5' C B 601 18.190 130.189 103.207 1.00 57.16 O
TER
ATOM 2 P G A 517 10.828 140.712 96.407 1.00 64.11 P
ATOM 3 OP1 G A 517 9.553 140.407 97.117 1.00 63.98 O
ATOM 4 OP2 G A 517 11.493 142.023 96.635 1.00 63.68 O
ATOM 5 O5' G A 517 11.876 139.563 96.755 1.00 62.85 O
ATOM 6 C5' G A 517 11.480 138.180 96.719 1.00 60.20 C
ATOM 7 C4' G A 517 12.677 137.279 96.906 1.00 58.05 C
ATOM 8 O4' G A 517 13.608 137.453 95.803 1.00 57.38 O
ATOM 9 C3' G A 517 13.553 137.525 98.123 1.00 56.07 C
ATOM 10 O3' G A 517 12.989 137.029 99.326 1.00 55.81 O
ATOM 11 C2' G A 517 14.810 136.774 97.718 1.00 55.70 C
ATOM 12 O2' G A 517 14.652 135.371 97.764 1.00 56.51 O
ATOM 13 C1' G A 517 14.931 137.201 96.258 1.00 56.12 C
ATOM 14 N9 G A 517 15.694 138.443 96.210 1.00 55.83 N
ATOM 15 C8 G A 517 15.208 139.727 96.247 1.00 56.08 C
ATOM 16 N7 G A 517 16.151 140.627 96.283 1.00 56.92 N
ATOM 17 C5 G A 517 17.328 139.893 96.250 1.00 55.74 C
ATOM 18 C6 G A 517 18.678 140.320 96.280 1.00 56.15 C
ATOM 19 O6 G A 517 19.120 141.472 96.372 1.00 55.53 O
ATOM 20 N1 G A 517 19.554 139.245 96.204 1.00 55.89 N
ATOM 21 C2 G A 517 19.178 137.926 96.124 1.00 56.39 C
ATOM 22 N2 G A 517 20.166 137.023 96.035 1.00 57.19 N
ATOM 23 N3 G A 517 17.925 137.518 96.123 1.00 56.07 N
ATOM 24 C4 G A 517 17.060 138.546 96.182 1.00 55.42 C
ATOM 25 P C A 518 13.233 137.817 100.707 1.00 55.76 P
ATOM 26 OP1 C A 518 12.408 137.092 101.703 1.00 57.31 O
ATOM 27 OP2 C A 518 13.030 139.273 100.503 1.00 56.12 O
ATOM 28 O5' C A 518 14.773 137.577 101.052 1.00 56.23 O
TER
ATOM 1 O3' U B 599 19.423 133.922 95.631 1.00 54.90 O
ATOM 2 P U B 600 20.248 132.938 96.594 1.00 56.40 P
ATOM 3 OP1 U B 600 21.381 133.761 97.096 1.00 57.86 O
ATOM 4 OP2 U B 600 20.530 131.685 95.861 1.00 54.80 O
ATOM 5 O5' U B 600 19.250 132.637 97.805 1.00 55.14 O
ATOM 6 C5' U B 600 19.012 133.639 98.813 1.00 56.09 C
ATOM 7 C4' U B 600 17.878 133.240 99.731 1.00 56.50 C
ATOM 8 O4' U B 600 16.663 133.053 98.962 1.00 56.58 O
ATOM 9 C3' U B 600 18.014 131.946 100.517 1.00 56.63 C
ATOM 10 O3' U B 600 18.806 132.118 101.687 1.00 57.13 O
ATOM 11 C2' U B 600 16.566 131.655 100.879 1.00 55.82 C
ATOM 12 O2' U B 600 16.112 132.470 101.943 1.00 55.81 O
ATOM 13 C1' U B 600 15.853 132.071 99.591 1.00 55.60 C
ATOM 14 N1 U B 600 15.690 130.938 98.670 1.00 53.77 N
ATOM 15 C2 U B 600 14.612 130.097 98.866 1.00 52.58 C
ATOM 16 O2 U B 600 13.775 130.277 99.734 1.00 51.46 O
ATOM 17 N3 U B 600 14.549 129.035 98.005 1.00 51.87 N
ATOM 18 C4 U B 600 15.422 128.745 96.983 1.00 52.17 C
ATOM 19 O4 U B 600 15.236 127.746 96.297 1.00 53.03 O
ATOM 20 C5 U B 600 16.491 129.673 96.830 1.00 52.65 C
ATOM 21 C6 U B 600 16.588 130.710 97.656 1.00 53.68 C
ATOM 22 P C B 601 19.422 130.832 102.434 1.00 57.91 P
ATOM 23 OP1 C B 601 20.368 131.370 103.442 1.00 57.60 O
ATOM 24 OP2 C B 601 19.895 129.846 101.429 1.00 55.92 O
ATOM 25 O5' C B 601 18.190 130.189 103.207 1.00 57.16 O
TER
Atoms:
OP1: (9.553,140.407,97.117)
OP2: (11.493,142.023,96.635)
C3': (13.553,137.525,98.123)
C1': (14.931,137.201,96.258)
C5': (11.480,138.180,96.719)
O6: (19.120,141.472,96.372)
O4': (13.608,137.453,95.803)
C8: (15.208,139.727,96.247)
C2: (19.178,137.926,96.124)
C6: (18.678,140.320,96.280)
C5: (17.328,139.893,96.250)
C4: (17.060,138.546,96.182)
P: (10.828,140.712,96.407)
C4': (12.677,137.279,96.906)
C2': (14.810,136.774,97.718)
O2': (14.652,135.371,97.764)
N1: (19.554,139.245,96.204)
N2: (20.166,137.023,96.035)
N3: (17.925,137.518,96.123)
N7: (16.151,140.627,96.283)
N9: (15.694,138.443,96.210)
O5': (11.876,139.563,96.755)
O3': (12.989,137.029,99.326)
OP2: (11.493,142.023,96.635)
C3': (13.553,137.525,98.123)
C1': (14.931,137.201,96.258)
C5': (11.480,138.180,96.719)
O6: (19.120,141.472,96.372)
O4': (13.608,137.453,95.803)
C8: (15.208,139.727,96.247)
C2: (19.178,137.926,96.124)
C6: (18.678,140.320,96.280)
C5: (17.328,139.893,96.250)
C4: (17.060,138.546,96.182)
P: (10.828,140.712,96.407)
C4': (12.677,137.279,96.906)
C2': (14.810,136.774,97.718)
O2': (14.652,135.371,97.764)
N1: (19.554,139.245,96.204)
N2: (20.166,137.023,96.035)
N3: (17.925,137.518,96.123)
N7: (16.151,140.627,96.283)
N9: (15.694,138.443,96.210)
O5': (11.876,139.563,96.755)
O3': (12.989,137.029,99.326)
C4: (15.422,128.745,96.983)
N3: (14.549,129.035,98.005)
OP1: (21.381,133.761,97.096)
OP2: (20.530,131.685,95.861)
C2: (14.612,130.097,98.866)
C1': (15.853,132.071,99.591)
C3': (18.014,131.946,100.517)
O5': (19.250,132.637,97.805)
O4': (16.663,133.053,98.962)
C5': (19.012,133.639,98.813)
P: (20.248,132.938,96.594)
C4': (17.878,133.240,99.731)
C2': (16.566,131.655,100.879)
O2': (16.112,132.470,101.943)
N1: (15.690,130.938,98.670)
O4: (15.236,127.746,96.297)
O2: (13.775,130.277,99.734)
C6: (16.588,130.710,97.656)
C5: (16.491,129.673,96.830)
O3': (18.806,132.118,101.687)
N3: (14.549,129.035,98.005)
OP1: (21.381,133.761,97.096)
OP2: (20.530,131.685,95.861)
C2: (14.612,130.097,98.866)
C1': (15.853,132.071,99.591)
C3': (18.014,131.946,100.517)
O5': (19.250,132.637,97.805)
O4': (16.663,133.053,98.962)
C5': (19.012,133.639,98.813)
P: (20.248,132.938,96.594)
C4': (17.878,133.240,99.731)
C2': (16.566,131.655,100.879)
O2': (16.112,132.470,101.943)
N1: (15.690,130.938,98.670)
O4: (15.236,127.746,96.297)
O2: (13.775,130.277,99.734)
C6: (16.588,130.710,97.656)
C5: (16.491,129.673,96.830)
O3': (18.806,132.118,101.687)
Image (generated by PyMOL):