Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0517:0600
Extra
PDB:
ATOM 1 O3' G A 516 10.572 140.337 94.467 1.00 56.02 O
ATOM 2 P G A 517 10.759 140.543 96.048 1.00 56.69 P
ATOM 3 OP1 G A 517 9.430 140.292 96.657 1.00 58.36 O
ATOM 4 OP2 G A 517 11.442 141.844 96.292 1.00 56.78 O
ATOM 5 O5' G A 517 11.746 139.369 96.479 1.00 54.70 O
ATOM 6 C5' G A 517 11.331 137.991 96.417 1.00 50.57 C
ATOM 7 C4' G A 517 12.520 137.076 96.603 1.00 48.59 C
ATOM 8 O4' G A 517 13.452 137.253 95.503 1.00 48.18 O
ATOM 9 C3' G A 517 13.400 137.328 97.814 1.00 47.86 C
ATOM 10 O3' G A 517 12.852 136.830 99.024 1.00 48.83 O
ATOM 11 C2' G A 517 14.657 136.579 97.417 1.00 47.22 C
ATOM 12 O2' G A 517 14.499 135.182 97.508 1.00 49.59 O
ATOM 13 C1' G A 517 14.770 136.970 95.946 1.00 47.30 C
ATOM 14 N9 G A 517 15.586 138.175 95.842 1.00 47.06 N
ATOM 15 C8 G A 517 15.161 139.481 95.815 1.00 46.63 C
ATOM 16 N7 G A 517 16.145 140.339 95.823 1.00 46.70 N
ATOM 17 C5 G A 517 17.290 139.552 95.834 1.00 46.28 C
ATOM 18 C6 G A 517 18.662 139.920 95.863 1.00 45.31 C
ATOM 19 O6 G A 517 19.153 141.047 95.894 1.00 44.86 O
ATOM 20 N1 G A 517 19.492 138.806 95.860 1.00 45.19 N
ATOM 21 C2 G A 517 19.063 137.502 95.831 1.00 47.44 C
ATOM 22 N2 G A 517 20.017 136.562 95.812 1.00 47.52 N
ATOM 23 N3 G A 517 17.790 137.145 95.815 1.00 48.09 N
ATOM 24 C4 G A 517 16.963 138.215 95.819 1.00 47.64 C
ATOM 25 P C A 518 13.159 137.589 100.409 1.00 48.46 P
ATOM 26 OP1 C A 518 12.388 136.856 101.444 1.00 49.33 O
ATOM 27 OP2 C A 518 12.953 139.055 100.234 1.00 47.12 O
ATOM 28 O5' C A 518 14.703 137.309 100.681 1.00 48.96 O
TER
ATOM 1 O3' U B 599 19.171 133.706 95.265 1.00 50.50 O
ATOM 2 P U B 600 20.036 132.709 96.176 1.00 51.33 P
ATOM 3 OP1 U B 600 21.235 133.472 96.596 1.00 54.05 O
ATOM 4 OP2 U B 600 20.209 131.436 95.456 1.00 53.23 O
ATOM 5 O5' U B 600 19.118 132.443 97.449 1.00 50.54 O
ATOM 6 C5' U B 600 18.908 133.476 98.427 1.00 51.54 C
ATOM 7 C4' U B 600 17.778 133.110 99.363 1.00 52.36 C
ATOM 8 O4' U B 600 16.554 132.916 98.602 1.00 52.05 O
ATOM 9 C3' U B 600 17.909 131.809 100.136 1.00 52.27 C
ATOM 10 O3' U B 600 18.766 131.915 101.258 1.00 51.31 O
ATOM 11 C2' U B 600 16.464 131.549 100.540 1.00 52.28 C
ATOM 12 O2' U B 600 16.014 132.350 101.617 1.00 52.59 O
ATOM 13 C1' U B 600 15.733 131.968 99.266 1.00 51.33 C
ATOM 14 N1 U B 600 15.533 130.808 98.391 1.00 49.33 N
ATOM 15 C2 U B 600 14.381 130.080 98.574 1.00 50.14 C
ATOM 16 O2 U B 600 13.525 130.387 99.391 1.00 51.24 O
ATOM 17 N3 U B 600 14.259 128.979 97.768 1.00 50.34 N
ATOM 18 C4 U B 600 15.143 128.550 96.810 1.00 50.06 C
ATOM 19 O4 U B 600 14.874 127.549 96.143 1.00 50.46 O
ATOM 20 C5 U B 600 16.307 129.368 96.670 1.00 50.06 C
ATOM 21 C6 U B 600 16.456 130.443 97.445 1.00 48.94 C
ATOM 22 P C B 601 19.296 130.580 101.979 1.00 52.41 P
ATOM 23 OP1 C B 601 20.269 131.024 103.009 1.00 52.01 O
ATOM 24 OP2 C B 601 19.706 129.585 100.959 1.00 51.01 O
ATOM 25 O5' C B 601 18.014 130.004 102.723 1.00 52.79 O
TER
ATOM 2 P G A 517 10.759 140.543 96.048 1.00 56.69 P
ATOM 3 OP1 G A 517 9.430 140.292 96.657 1.00 58.36 O
ATOM 4 OP2 G A 517 11.442 141.844 96.292 1.00 56.78 O
ATOM 5 O5' G A 517 11.746 139.369 96.479 1.00 54.70 O
ATOM 6 C5' G A 517 11.331 137.991 96.417 1.00 50.57 C
ATOM 7 C4' G A 517 12.520 137.076 96.603 1.00 48.59 C
ATOM 8 O4' G A 517 13.452 137.253 95.503 1.00 48.18 O
ATOM 9 C3' G A 517 13.400 137.328 97.814 1.00 47.86 C
ATOM 10 O3' G A 517 12.852 136.830 99.024 1.00 48.83 O
ATOM 11 C2' G A 517 14.657 136.579 97.417 1.00 47.22 C
ATOM 12 O2' G A 517 14.499 135.182 97.508 1.00 49.59 O
ATOM 13 C1' G A 517 14.770 136.970 95.946 1.00 47.30 C
ATOM 14 N9 G A 517 15.586 138.175 95.842 1.00 47.06 N
ATOM 15 C8 G A 517 15.161 139.481 95.815 1.00 46.63 C
ATOM 16 N7 G A 517 16.145 140.339 95.823 1.00 46.70 N
ATOM 17 C5 G A 517 17.290 139.552 95.834 1.00 46.28 C
ATOM 18 C6 G A 517 18.662 139.920 95.863 1.00 45.31 C
ATOM 19 O6 G A 517 19.153 141.047 95.894 1.00 44.86 O
ATOM 20 N1 G A 517 19.492 138.806 95.860 1.00 45.19 N
ATOM 21 C2 G A 517 19.063 137.502 95.831 1.00 47.44 C
ATOM 22 N2 G A 517 20.017 136.562 95.812 1.00 47.52 N
ATOM 23 N3 G A 517 17.790 137.145 95.815 1.00 48.09 N
ATOM 24 C4 G A 517 16.963 138.215 95.819 1.00 47.64 C
ATOM 25 P C A 518 13.159 137.589 100.409 1.00 48.46 P
ATOM 26 OP1 C A 518 12.388 136.856 101.444 1.00 49.33 O
ATOM 27 OP2 C A 518 12.953 139.055 100.234 1.00 47.12 O
ATOM 28 O5' C A 518 14.703 137.309 100.681 1.00 48.96 O
TER
ATOM 1 O3' U B 599 19.171 133.706 95.265 1.00 50.50 O
ATOM 2 P U B 600 20.036 132.709 96.176 1.00 51.33 P
ATOM 3 OP1 U B 600 21.235 133.472 96.596 1.00 54.05 O
ATOM 4 OP2 U B 600 20.209 131.436 95.456 1.00 53.23 O
ATOM 5 O5' U B 600 19.118 132.443 97.449 1.00 50.54 O
ATOM 6 C5' U B 600 18.908 133.476 98.427 1.00 51.54 C
ATOM 7 C4' U B 600 17.778 133.110 99.363 1.00 52.36 C
ATOM 8 O4' U B 600 16.554 132.916 98.602 1.00 52.05 O
ATOM 9 C3' U B 600 17.909 131.809 100.136 1.00 52.27 C
ATOM 10 O3' U B 600 18.766 131.915 101.258 1.00 51.31 O
ATOM 11 C2' U B 600 16.464 131.549 100.540 1.00 52.28 C
ATOM 12 O2' U B 600 16.014 132.350 101.617 1.00 52.59 O
ATOM 13 C1' U B 600 15.733 131.968 99.266 1.00 51.33 C
ATOM 14 N1 U B 600 15.533 130.808 98.391 1.00 49.33 N
ATOM 15 C2 U B 600 14.381 130.080 98.574 1.00 50.14 C
ATOM 16 O2 U B 600 13.525 130.387 99.391 1.00 51.24 O
ATOM 17 N3 U B 600 14.259 128.979 97.768 1.00 50.34 N
ATOM 18 C4 U B 600 15.143 128.550 96.810 1.00 50.06 C
ATOM 19 O4 U B 600 14.874 127.549 96.143 1.00 50.46 O
ATOM 20 C5 U B 600 16.307 129.368 96.670 1.00 50.06 C
ATOM 21 C6 U B 600 16.456 130.443 97.445 1.00 48.94 C
ATOM 22 P C B 601 19.296 130.580 101.979 1.00 52.41 P
ATOM 23 OP1 C B 601 20.269 131.024 103.009 1.00 52.01 O
ATOM 24 OP2 C B 601 19.706 129.585 100.959 1.00 51.01 O
ATOM 25 O5' C B 601 18.014 130.004 102.723 1.00 52.79 O
TER
Atoms:
OP1: (9.430,140.292,96.657)
OP2: (11.442,141.844,96.292)
C3': (13.400,137.328,97.814)
C1': (14.770,136.970,95.946)
C5': (11.331,137.991,96.417)
O6: (19.153,141.047,95.894)
O4': (13.452,137.253,95.503)
C8: (15.161,139.481,95.815)
C2: (19.063,137.502,95.831)
C6: (18.662,139.920,95.863)
C5: (17.290,139.552,95.834)
C4: (16.963,138.215,95.819)
P: (10.759,140.543,96.048)
C4': (12.520,137.076,96.603)
C2': (14.657,136.579,97.417)
O2': (14.499,135.182,97.508)
N1: (19.492,138.806,95.860)
N2: (20.017,136.562,95.812)
N3: (17.790,137.145,95.815)
N7: (16.145,140.339,95.823)
N9: (15.586,138.175,95.842)
O5': (11.746,139.369,96.479)
O3': (12.852,136.830,99.024)
OP2: (11.442,141.844,96.292)
C3': (13.400,137.328,97.814)
C1': (14.770,136.970,95.946)
C5': (11.331,137.991,96.417)
O6: (19.153,141.047,95.894)
O4': (13.452,137.253,95.503)
C8: (15.161,139.481,95.815)
C2: (19.063,137.502,95.831)
C6: (18.662,139.920,95.863)
C5: (17.290,139.552,95.834)
C4: (16.963,138.215,95.819)
P: (10.759,140.543,96.048)
C4': (12.520,137.076,96.603)
C2': (14.657,136.579,97.417)
O2': (14.499,135.182,97.508)
N1: (19.492,138.806,95.860)
N2: (20.017,136.562,95.812)
N3: (17.790,137.145,95.815)
N7: (16.145,140.339,95.823)
N9: (15.586,138.175,95.842)
O5': (11.746,139.369,96.479)
O3': (12.852,136.830,99.024)
C4: (15.143,128.550,96.810)
N3: (14.259,128.979,97.768)
OP1: (21.235,133.472,96.596)
OP2: (20.209,131.436,95.456)
C2: (14.381,130.080,98.574)
C1': (15.733,131.968,99.266)
C3': (17.909,131.809,100.136)
O5': (19.118,132.443,97.449)
O4': (16.554,132.916,98.602)
C5': (18.908,133.476,98.427)
P: (20.036,132.709,96.176)
C4': (17.778,133.110,99.363)
C2': (16.464,131.549,100.540)
O2': (16.014,132.350,101.617)
N1: (15.533,130.808,98.391)
O4: (14.874,127.549,96.143)
O2: (13.525,130.387,99.391)
C6: (16.456,130.443,97.445)
C5: (16.307,129.368,96.670)
O3': (18.766,131.915,101.258)
N3: (14.259,128.979,97.768)
OP1: (21.235,133.472,96.596)
OP2: (20.209,131.436,95.456)
C2: (14.381,130.080,98.574)
C1': (15.733,131.968,99.266)
C3': (17.909,131.809,100.136)
O5': (19.118,132.443,97.449)
O4': (16.554,132.916,98.602)
C5': (18.908,133.476,98.427)
P: (20.036,132.709,96.176)
C4': (17.778,133.110,99.363)
C2': (16.464,131.549,100.540)
O2': (16.014,132.350,101.617)
N1: (15.533,130.808,98.391)
O4: (14.874,127.549,96.143)
O2: (13.525,130.387,99.391)
C6: (16.456,130.443,97.445)
C5: (16.307,129.368,96.670)
O3': (18.766,131.915,101.258)
Image (generated by PyMOL):