Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:V8:V25
Extra
PDB:
ATOM 1 O3' U A 7 5.001 19.717 -2.131 1.00 72.12 O
ATOM 2 P G A 8 4.208 19.307 -3.454 1.00 72.11 P
ATOM 3 OP1 G A 8 5.357 18.887 -4.281 1.00 71.82 O
ATOM 4 OP2 G A 8 3.344 20.427 -3.885 1.00 73.85 O
ATOM 5 O5' G A 8 3.296 18.063 -3.088 1.00 70.49 O
ATOM 6 C5' G A 8 3.766 16.719 -3.102 1.00 68.80 C
ATOM 7 C4' G A 8 2.719 15.763 -3.629 1.00 68.00 C
ATOM 8 O4' G A 8 1.488 15.872 -2.851 1.00 68.16 O
ATOM 9 C3' G A 8 2.313 15.941 -5.095 1.00 68.80 C
ATOM 10 O3' G A 8 2.118 14.666 -5.712 1.00 67.57 O
ATOM 11 C2' G A 8 0.954 16.617 -4.985 1.00 69.93 C
ATOM 12 O2' G A 8 0.103 16.399 -6.082 1.00 70.39 O
ATOM 13 C1' G A 8 0.399 15.926 -3.754 1.00 68.83 C
ATOM 14 N9 G A 8 -0.823 16.555 -3.214 1.00 69.81 N
ATOM 15 C8 G A 8 -1.277 17.820 -3.523 1.00 71.60 C
ATOM 16 N7 G A 8 -2.414 18.123 -2.949 1.00 72.24 N
ATOM 17 C5 G A 8 -2.760 16.980 -2.238 1.00 70.82 C
ATOM 18 C6 G A 8 -3.892 16.710 -1.429 1.00 70.84 C
ATOM 19 O6 G A 8 -4.845 17.452 -1.167 1.00 72.13 O
ATOM 20 N1 G A 8 -3.863 15.434 -0.887 1.00 69.30 N
ATOM 21 C2 G A 8 -2.869 14.519 -1.092 1.00 67.89 C
ATOM 22 N2 G A 8 -3.013 13.322 -0.482 1.00 66.64 N
ATOM 23 N3 G A 8 -1.808 14.767 -1.844 1.00 67.83 N
ATOM 24 C4 G A 8 -1.804 16.001 -2.394 1.00 69.32 C
ATOM 25 P A A 9 2.979 14.128 -6.962 1.00 67.22 P
ATOM 26 OP1 A A 9 4.416 14.316 -6.648 1.00 67.08 O
ATOM 27 OP2 A A 9 2.455 12.774 -7.266 1.00 65.89 O
ATOM 28 O5' A A 9 2.581 15.155 -8.101 1.00 69.03 O
TER
ATOM 1 O3' G B 24 0.539 11.498 0.834 1.00 63.29 O
ATOM 2 P U B 25 0.178 10.391 -0.250 1.00 62.55 P
ATOM 3 OP1 U B 25 1.441 10.031 -0.935 1.00 61.90 O
ATOM 4 OP2 U B 25 -1.016 10.911 -0.955 1.00 63.56 O
ATOM 5 O5' U B 25 -0.321 9.200 0.660 1.00 61.68 O
ATOM 6 C5' U B 25 0.588 8.536 1.520 1.00 60.81 C
ATOM 7 C4' U B 25 -0.051 8.152 2.827 1.00 60.78 C
ATOM 8 O4' U B 25 0.056 9.256 3.754 1.00 61.59 O
ATOM 9 C3' U B 25 -1.536 7.823 2.817 1.00 61.16 C
ATOM 10 O3' U B 25 -1.816 6.520 2.348 1.00 60.40 O
ATOM 11 C2' U B 25 -1.896 8.021 4.282 1.00 61.55 C
ATOM 12 O2' U B 25 -1.450 6.929 5.078 1.00 60.75 O
ATOM 13 C1' U B 25 -1.044 9.239 4.633 1.00 62.04 C
ATOM 14 N1 U B 25 -1.792 10.488 4.444 1.00 63.24 N
ATOM 15 C2 U B 25 -2.901 10.669 5.230 1.00 63.92 C
ATOM 16 O2 U B 25 -3.280 9.854 6.053 1.00 63.60 O
ATOM 17 N3 U B 25 -3.562 11.841 5.007 1.00 65.13 N
ATOM 18 C4 U B 25 -3.232 12.827 4.119 1.00 65.77 C
ATOM 19 O4 U B 25 -3.941 13.822 4.059 1.00 66.99 O
ATOM 20 C5 U B 25 -2.066 12.570 3.351 1.00 65.03 C
ATOM 21 C6 U B 25 -1.402 11.430 3.534 1.00 63.80 C
ATOM 22 P G B 26 -3.288 6.138 1.840 1.00 60.91 P
ATOM 23 OP1 G B 26 -3.221 4.666 1.665 1.00 59.97 O
ATOM 24 OP2 G B 26 -3.573 6.983 0.653 1.00 61.62 O
ATOM 25 O5' G B 26 -4.283 6.535 3.028 1.00 61.80 O
TER
ATOM 2 P G A 8 4.208 19.307 -3.454 1.00 72.11 P
ATOM 3 OP1 G A 8 5.357 18.887 -4.281 1.00 71.82 O
ATOM 4 OP2 G A 8 3.344 20.427 -3.885 1.00 73.85 O
ATOM 5 O5' G A 8 3.296 18.063 -3.088 1.00 70.49 O
ATOM 6 C5' G A 8 3.766 16.719 -3.102 1.00 68.80 C
ATOM 7 C4' G A 8 2.719 15.763 -3.629 1.00 68.00 C
ATOM 8 O4' G A 8 1.488 15.872 -2.851 1.00 68.16 O
ATOM 9 C3' G A 8 2.313 15.941 -5.095 1.00 68.80 C
ATOM 10 O3' G A 8 2.118 14.666 -5.712 1.00 67.57 O
ATOM 11 C2' G A 8 0.954 16.617 -4.985 1.00 69.93 C
ATOM 12 O2' G A 8 0.103 16.399 -6.082 1.00 70.39 O
ATOM 13 C1' G A 8 0.399 15.926 -3.754 1.00 68.83 C
ATOM 14 N9 G A 8 -0.823 16.555 -3.214 1.00 69.81 N
ATOM 15 C8 G A 8 -1.277 17.820 -3.523 1.00 71.60 C
ATOM 16 N7 G A 8 -2.414 18.123 -2.949 1.00 72.24 N
ATOM 17 C5 G A 8 -2.760 16.980 -2.238 1.00 70.82 C
ATOM 18 C6 G A 8 -3.892 16.710 -1.429 1.00 70.84 C
ATOM 19 O6 G A 8 -4.845 17.452 -1.167 1.00 72.13 O
ATOM 20 N1 G A 8 -3.863 15.434 -0.887 1.00 69.30 N
ATOM 21 C2 G A 8 -2.869 14.519 -1.092 1.00 67.89 C
ATOM 22 N2 G A 8 -3.013 13.322 -0.482 1.00 66.64 N
ATOM 23 N3 G A 8 -1.808 14.767 -1.844 1.00 67.83 N
ATOM 24 C4 G A 8 -1.804 16.001 -2.394 1.00 69.32 C
ATOM 25 P A A 9 2.979 14.128 -6.962 1.00 67.22 P
ATOM 26 OP1 A A 9 4.416 14.316 -6.648 1.00 67.08 O
ATOM 27 OP2 A A 9 2.455 12.774 -7.266 1.00 65.89 O
ATOM 28 O5' A A 9 2.581 15.155 -8.101 1.00 69.03 O
TER
ATOM 1 O3' G B 24 0.539 11.498 0.834 1.00 63.29 O
ATOM 2 P U B 25 0.178 10.391 -0.250 1.00 62.55 P
ATOM 3 OP1 U B 25 1.441 10.031 -0.935 1.00 61.90 O
ATOM 4 OP2 U B 25 -1.016 10.911 -0.955 1.00 63.56 O
ATOM 5 O5' U B 25 -0.321 9.200 0.660 1.00 61.68 O
ATOM 6 C5' U B 25 0.588 8.536 1.520 1.00 60.81 C
ATOM 7 C4' U B 25 -0.051 8.152 2.827 1.00 60.78 C
ATOM 8 O4' U B 25 0.056 9.256 3.754 1.00 61.59 O
ATOM 9 C3' U B 25 -1.536 7.823 2.817 1.00 61.16 C
ATOM 10 O3' U B 25 -1.816 6.520 2.348 1.00 60.40 O
ATOM 11 C2' U B 25 -1.896 8.021 4.282 1.00 61.55 C
ATOM 12 O2' U B 25 -1.450 6.929 5.078 1.00 60.75 O
ATOM 13 C1' U B 25 -1.044 9.239 4.633 1.00 62.04 C
ATOM 14 N1 U B 25 -1.792 10.488 4.444 1.00 63.24 N
ATOM 15 C2 U B 25 -2.901 10.669 5.230 1.00 63.92 C
ATOM 16 O2 U B 25 -3.280 9.854 6.053 1.00 63.60 O
ATOM 17 N3 U B 25 -3.562 11.841 5.007 1.00 65.13 N
ATOM 18 C4 U B 25 -3.232 12.827 4.119 1.00 65.77 C
ATOM 19 O4 U B 25 -3.941 13.822 4.059 1.00 66.99 O
ATOM 20 C5 U B 25 -2.066 12.570 3.351 1.00 65.03 C
ATOM 21 C6 U B 25 -1.402 11.430 3.534 1.00 63.80 C
ATOM 22 P G B 26 -3.288 6.138 1.840 1.00 60.91 P
ATOM 23 OP1 G B 26 -3.221 4.666 1.665 1.00 59.97 O
ATOM 24 OP2 G B 26 -3.573 6.983 0.653 1.00 61.62 O
ATOM 25 O5' G B 26 -4.283 6.535 3.028 1.00 61.80 O
TER
Atoms:
OP1: (5.357,18.887,-4.281)
OP2: (3.344,20.427,-3.885)
C3': (2.313,15.941,-5.095)
C1': (0.399,15.926,-3.754)
C5': (3.766,16.719,-3.102)
O6: (-4.845,17.452,-1.167)
O4': (1.488,15.872,-2.851)
C8: (-1.277,17.820,-3.523)
C2: (-2.869,14.519,-1.092)
C6: (-3.892,16.710,-1.429)
C5: (-2.760,16.980,-2.238)
C4: (-1.804,16.001,-2.394)
P: (4.208,19.307,-3.454)
C4': (2.719,15.763,-3.629)
C2': (0.954,16.617,-4.985)
O2': (0.103,16.399,-6.082)
N1: (-3.863,15.434,-0.887)
N2: (-3.013,13.322,-0.482)
N3: (-1.808,14.767,-1.844)
N7: (-2.414,18.123,-2.949)
N9: (-0.823,16.555,-3.214)
O5': (3.296,18.063,-3.088)
O3': (2.118,14.666,-5.712)
OP2: (3.344,20.427,-3.885)
C3': (2.313,15.941,-5.095)
C1': (0.399,15.926,-3.754)
C5': (3.766,16.719,-3.102)
O6: (-4.845,17.452,-1.167)
O4': (1.488,15.872,-2.851)
C8: (-1.277,17.820,-3.523)
C2: (-2.869,14.519,-1.092)
C6: (-3.892,16.710,-1.429)
C5: (-2.760,16.980,-2.238)
C4: (-1.804,16.001,-2.394)
P: (4.208,19.307,-3.454)
C4': (2.719,15.763,-3.629)
C2': (0.954,16.617,-4.985)
O2': (0.103,16.399,-6.082)
N1: (-3.863,15.434,-0.887)
N2: (-3.013,13.322,-0.482)
N3: (-1.808,14.767,-1.844)
N7: (-2.414,18.123,-2.949)
N9: (-0.823,16.555,-3.214)
O5': (3.296,18.063,-3.088)
O3': (2.118,14.666,-5.712)
C4: (-3.232,12.827,4.119)
N3: (-3.562,11.841,5.007)
OP1: (1.441,10.031,-0.935)
OP2: (-1.016,10.911,-0.955)
C2: (-2.901,10.669,5.230)
C1': (-1.044,9.239,4.633)
C3': (-1.536,7.823,2.817)
O5': (-0.321,9.200,0.660)
O4': (0.056,9.256,3.754)
C5': (0.588,8.536,1.520)
P: (0.178,10.391,-0.250)
C4': (-0.051,8.152,2.827)
C2': (-1.896,8.021,4.282)
O2': (-1.450,6.929,5.078)
N1: (-1.792,10.488,4.444)
O4: (-3.941,13.822,4.059)
O2: (-3.280,9.854,6.053)
C6: (-1.402,11.430,3.534)
C5: (-2.066,12.570,3.351)
O3': (-1.816,6.520,2.348)
N3: (-3.562,11.841,5.007)
OP1: (1.441,10.031,-0.935)
OP2: (-1.016,10.911,-0.955)
C2: (-2.901,10.669,5.230)
C1': (-1.044,9.239,4.633)
C3': (-1.536,7.823,2.817)
O5': (-0.321,9.200,0.660)
O4': (0.056,9.256,3.754)
C5': (0.588,8.536,1.520)
P: (0.178,10.391,-0.250)
C4': (-0.051,8.152,2.827)
C2': (-1.896,8.021,4.282)
O2': (-1.450,6.929,5.078)
N1: (-1.792,10.488,4.444)
O4: (-3.941,13.822,4.059)
O2: (-3.280,9.854,6.053)
C6: (-1.402,11.430,3.534)
C5: (-2.066,12.570,3.351)
O3': (-1.816,6.520,2.348)
Image (generated by PyMOL):