ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0509:0510

Extra

PDB:
ATOM 1 O3' A A 508 28.169 134.924 79.103 1.00 36.37 O
ATOM 2 P A A 509 28.237 135.923 80.355 1.00 37.81 P
ATOM 3 OP1 A A 509 27.799 135.181 81.551 1.00 37.85 O
ATOM 4 OP2 A A 509 27.561 137.186 79.984 1.00 37.26 O
ATOM 5 O5' A A 509 29.790 136.211 80.537 1.00 38.72 O
ATOM 6 C5' A A 509 30.706 135.146 80.861 1.00 35.04 C
ATOM 7 C4' A A 509 32.137 135.635 80.798 1.00 33.45 C
ATOM 8 O4' A A 509 32.488 136.031 79.447 1.00 33.00 O
ATOM 9 C3' A A 509 32.454 136.870 81.613 1.00 32.58 C
ATOM 10 O3' A A 509 32.663 136.532 82.967 1.00 33.21 O
ATOM 11 C2' A A 509 33.750 137.336 80.977 1.00 34.21 C
ATOM 12 O2' A A 509 34.865 136.596 81.415 1.00 39.22 O
ATOM 13 C1' A A 509 33.497 137.020 79.504 1.00 33.60 C
ATOM 14 N9 A A 509 33.069 138.203 78.758 1.00 34.71 N
ATOM 15 C8 A A 509 31.878 138.881 78.821 1.00 35.17 C
ATOM 16 N7 A A 509 31.841 139.950 78.063 1.00 35.92 N
ATOM 17 C5 A A 509 33.086 139.968 77.449 1.00 35.71 C
ATOM 18 C6 A A 509 33.681 140.853 76.530 1.00 36.12 C
ATOM 19 N6 A A 509 33.083 141.950 76.050 1.00 37.10 N
ATOM 20 N1 A A 509 34.932 140.573 76.114 1.00 35.54 N
ATOM 21 C2 A A 509 35.538 139.489 76.592 1.00 35.67 C
ATOM 22 N3 A A 509 35.092 138.591 77.459 1.00 36.62 N
ATOM 23 C4 A A 509 33.844 138.890 77.855 1.00 35.14 C
ATOM 24 P U A 510 31.755 137.199 84.100 1.00 35.53 P
ATOM 25 OP1 U A 510 32.305 136.733 85.389 1.00 32.82 O
ATOM 26 OP2 U A 510 30.328 136.960 83.782 1.00 36.91 O
ATOM 27 O5' U A 510 32.001 138.757 83.920 1.00 34.22 O
TER

ATOM 1 O3' A B 509 32.663 136.532 82.967 1.00 33.21 O
ATOM 2 P U B 510 31.755 137.199 84.100 1.00 35.53 P
ATOM 3 OP1 U B 510 32.305 136.733 85.389 1.00 32.82 O
ATOM 4 OP2 U B 510 30.328 136.960 83.782 1.00 36.91 O
ATOM 5 O5' U B 510 32.001 138.757 83.920 1.00 34.22 O
ATOM 6 C5' U B 510 33.321 139.283 83.809 1.00 34.71 C
ATOM 7 C4' U B 510 33.274 140.654 83.193 1.00 36.44 C
ATOM 8 O4' U B 510 32.764 140.551 81.840 1.00 36.99 O
ATOM 9 C3' U B 510 32.336 141.647 83.855 1.00 36.00 C
ATOM 10 O3' U B 510 32.935 142.229 85.006 1.00 37.24 O
ATOM 11 C2' U B 510 32.102 142.651 82.736 1.00 35.36 C
ATOM 12 O2' U B 510 33.180 143.545 82.588 1.00 33.82 O
ATOM 13 C1' U B 510 32.054 141.732 81.511 1.00 37.17 C
ATOM 14 N1 U B 510 30.695 141.359 81.085 1.00 38.40 N
ATOM 15 C2 U B 510 30.017 142.224 80.232 1.00 38.81 C
ATOM 16 O2 U B 510 30.499 143.256 79.804 1.00 37.40 O
ATOM 17 N3 U B 510 28.749 141.828 79.896 1.00 40.38 N
ATOM 18 C4 U B 510 28.101 140.678 80.303 1.00 42.65 C
ATOM 19 O4 U B 510 26.951 140.461 79.914 1.00 45.38 O
ATOM 20 C5 U B 510 28.869 139.832 81.168 1.00 42.45 C
ATOM 21 C6 U B 510 30.108 140.193 81.521 1.00 39.76 C
ATOM 22 P C B 511 32.016 142.966 86.102 1.00 41.25 P
ATOM 23 OP1 C B 511 32.895 143.236 87.271 1.00 40.32 O
ATOM 24 OP2 C B 511 30.755 142.207 86.296 1.00 40.26 O
ATOM 25 O5' C B 511 31.642 144.361 85.421 1.00 41.90 O
TER

Atoms:
OP1: (27.799,135.181,81.551)
OP2: (27.561,137.186,79.984)
C3': (32.454,136.870,81.613)
C1': (33.497,137.020,79.504)
C5': (30.706,135.146,80.861)
O4': (32.488,136.031,79.447)
C8: (31.878,138.881,78.821)
O2': (34.865,136.596,81.415)
C6: (33.681,140.853,76.530)
C5: (33.086,139.968,77.449)
C4: (33.844,138.890,77.855)
P: (28.237,135.923,80.355)
C4': (32.137,135.635,80.798)
C2': (33.750,137.336,80.977)
C2: (35.538,139.489,76.592)
N1: (34.932,140.573,76.114)
N3: (35.092,138.591,77.459)
N6: (33.083,141.950,76.050)
N7: (31.841,139.950,78.063)
N9: (33.069,138.203,78.758)
O5': (29.790,136.211,80.537)
O3': (32.663,136.532,82.967)
C4: (28.101,140.678,80.303)
N3: (28.749,141.828,79.896)
OP1: (32.305,136.733,85.389)
OP2: (30.328,136.960,83.782)
C2: (30.017,142.224,80.232)
C1': (32.054,141.732,81.511)
C3': (32.336,141.647,83.855)
O5': (32.001,138.757,83.920)
O4': (32.764,140.551,81.840)
C5': (33.321,139.283,83.809)
P: (31.755,137.199,84.100)
C4': (33.274,140.654,83.193)
C2': (32.102,142.651,82.736)
O2': (33.180,143.545,82.588)
N1: (30.695,141.359,81.085)
O4: (26.951,140.461,79.914)
O2: (30.499,143.256,79.804)
C6: (30.108,140.193,81.521)
C5: (28.869,139.832,81.168)
O3': (32.935,142.229,85.006)
Image (generated by PyMOL):
PyMOL image
show in jmol