Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2853:A2854
Extra
PDB:
ATOM 1 O3' G A2852 -4.400 -32.558 -34.443 1.00 4.07 O
ATOM 2 P A A2853 -5.118 -33.908 -34.973 1.00 7.56 P
ATOM 3 OP1 A A2853 -4.796 -34.986 -34.014 1.00 7.56 O
ATOM 4 OP2 A A2853 -4.724 -34.094 -36.406 1.00 7.56 O
ATOM 5 O5' A A2853 -6.665 -33.541 -34.874 1.00 7.56 O
ATOM 6 C5' A A2853 -7.302 -33.433 -33.608 1.00 7.56 C
ATOM 7 C4' A A2853 -8.588 -32.678 -33.714 1.00 7.56 C
ATOM 8 O4' A A2853 -8.328 -31.376 -34.279 1.00 7.56 O
ATOM 9 C3' A A2853 -9.631 -33.286 -34.637 1.00 7.56 C
ATOM 10 O3' A A2853 -10.389 -34.284 -34.019 1.00 7.56 O
ATOM 11 C2' A A2853 -10.458 -32.096 -35.063 1.00 7.56 C
ATOM 12 O2' A A2853 -11.445 -31.774 -34.078 1.00 7.56 O
ATOM 13 C1' A A2853 -9.391 -30.996 -35.125 1.00 7.56 C
ATOM 14 N9 A A2853 -8.866 -30.863 -36.482 1.00 7.22 N
ATOM 15 C8 A A2853 -8.004 -31.721 -37.123 1.00 7.22 C
ATOM 16 N7 A A2853 -7.744 -31.358 -38.367 1.00 7.22 N
ATOM 17 C5 A A2853 -8.495 -30.200 -38.525 1.00 7.22 C
ATOM 18 C6 A A2853 -8.650 -29.352 -39.610 1.00 7.22 C
ATOM 19 N6 A A2853 -8.020 -29.551 -40.767 1.00 7.22 N
ATOM 20 N1 A A2853 -9.466 -28.305 -39.464 1.00 7.22 N
ATOM 21 C2 A A2853 -10.064 -28.145 -38.284 1.00 7.22 C
ATOM 22 N3 A A2853 -10.006 -28.870 -37.174 1.00 7.22 N
ATOM 23 C4 A A2853 -9.194 -29.892 -37.377 1.00 7.22 C
ATOM 24 P U A2854 -10.253 -35.777 -34.526 1.00 0.01 P
ATOM 25 OP1 U A2854 -11.465 -36.501 -34.076 1.00 0.01 O
ATOM 26 OP2 U A2854 -8.915 -36.254 -34.068 1.00 0.01 O
ATOM 27 O5' U A2854 -10.291 -35.620 -36.108 1.00 0.01 O
TER
ATOM 1 O3' A B2853 -10.389 -34.284 -34.019 1.00 7.56 O
ATOM 2 P U B2854 -10.253 -35.777 -34.526 1.00 0.01 P
ATOM 3 OP1 U B2854 -11.465 -36.501 -34.076 1.00 0.01 O
ATOM 4 OP2 U B2854 -8.915 -36.254 -34.068 1.00 0.01 O
ATOM 5 O5' U B2854 -10.291 -35.620 -36.108 1.00 0.01 O
ATOM 6 C5' U B2854 -11.509 -35.756 -36.823 1.00 0.01 C
ATOM 7 C4' U B2854 -11.553 -34.862 -38.050 1.00 0.01 C
ATOM 8 O4' U B2854 -10.453 -33.912 -38.011 1.00 0.01 O
ATOM 9 C3' U B2854 -11.385 -35.547 -39.401 1.00 0.01 C
ATOM 10 O3' U B2854 -12.573 -36.106 -39.902 1.00 0.01 O
ATOM 11 C2' U B2854 -10.844 -34.426 -40.263 1.00 0.01 C
ATOM 12 O2' U B2854 -11.852 -33.482 -40.561 1.00 0.01 O
ATOM 13 C1' U B2854 -9.881 -33.792 -39.295 1.00 0.01 C
ATOM 14 N1 U B2854 -8.604 -34.497 -39.293 1.00 0.01 N
ATOM 15 C2 U B2854 -7.914 -34.521 -40.476 1.00 0.01 C
ATOM 16 O2 U B2854 -8.320 -33.984 -41.502 1.00 0.01 O
ATOM 17 N3 U B2854 -6.738 -35.201 -40.411 1.00 0.01 N
ATOM 18 C4 U B2854 -6.222 -35.824 -39.303 1.00 0.01 C
ATOM 19 O4 U B2854 -5.143 -36.408 -39.377 1.00 0.01 O
ATOM 20 C5 U B2854 -7.021 -35.747 -38.126 1.00 0.01 C
ATOM 21 C6 U B2854 -8.168 -35.104 -38.165 1.00 0.01 C
ATOM 22 P G B2855 -12.519 -37.489 -40.713 1.00 0.05 P
ATOM 23 OP1 G B2855 -13.916 -37.988 -40.803 1.00 0.05 O
ATOM 24 OP2 G B2855 -11.487 -38.335 -40.045 1.00 0.05 O
ATOM 25 O5' G B2855 -12.002 -37.061 -42.159 1.00 0.05 O
TER
ATOM 2 P A A2853 -5.118 -33.908 -34.973 1.00 7.56 P
ATOM 3 OP1 A A2853 -4.796 -34.986 -34.014 1.00 7.56 O
ATOM 4 OP2 A A2853 -4.724 -34.094 -36.406 1.00 7.56 O
ATOM 5 O5' A A2853 -6.665 -33.541 -34.874 1.00 7.56 O
ATOM 6 C5' A A2853 -7.302 -33.433 -33.608 1.00 7.56 C
ATOM 7 C4' A A2853 -8.588 -32.678 -33.714 1.00 7.56 C
ATOM 8 O4' A A2853 -8.328 -31.376 -34.279 1.00 7.56 O
ATOM 9 C3' A A2853 -9.631 -33.286 -34.637 1.00 7.56 C
ATOM 10 O3' A A2853 -10.389 -34.284 -34.019 1.00 7.56 O
ATOM 11 C2' A A2853 -10.458 -32.096 -35.063 1.00 7.56 C
ATOM 12 O2' A A2853 -11.445 -31.774 -34.078 1.00 7.56 O
ATOM 13 C1' A A2853 -9.391 -30.996 -35.125 1.00 7.56 C
ATOM 14 N9 A A2853 -8.866 -30.863 -36.482 1.00 7.22 N
ATOM 15 C8 A A2853 -8.004 -31.721 -37.123 1.00 7.22 C
ATOM 16 N7 A A2853 -7.744 -31.358 -38.367 1.00 7.22 N
ATOM 17 C5 A A2853 -8.495 -30.200 -38.525 1.00 7.22 C
ATOM 18 C6 A A2853 -8.650 -29.352 -39.610 1.00 7.22 C
ATOM 19 N6 A A2853 -8.020 -29.551 -40.767 1.00 7.22 N
ATOM 20 N1 A A2853 -9.466 -28.305 -39.464 1.00 7.22 N
ATOM 21 C2 A A2853 -10.064 -28.145 -38.284 1.00 7.22 C
ATOM 22 N3 A A2853 -10.006 -28.870 -37.174 1.00 7.22 N
ATOM 23 C4 A A2853 -9.194 -29.892 -37.377 1.00 7.22 C
ATOM 24 P U A2854 -10.253 -35.777 -34.526 1.00 0.01 P
ATOM 25 OP1 U A2854 -11.465 -36.501 -34.076 1.00 0.01 O
ATOM 26 OP2 U A2854 -8.915 -36.254 -34.068 1.00 0.01 O
ATOM 27 O5' U A2854 -10.291 -35.620 -36.108 1.00 0.01 O
TER
ATOM 1 O3' A B2853 -10.389 -34.284 -34.019 1.00 7.56 O
ATOM 2 P U B2854 -10.253 -35.777 -34.526 1.00 0.01 P
ATOM 3 OP1 U B2854 -11.465 -36.501 -34.076 1.00 0.01 O
ATOM 4 OP2 U B2854 -8.915 -36.254 -34.068 1.00 0.01 O
ATOM 5 O5' U B2854 -10.291 -35.620 -36.108 1.00 0.01 O
ATOM 6 C5' U B2854 -11.509 -35.756 -36.823 1.00 0.01 C
ATOM 7 C4' U B2854 -11.553 -34.862 -38.050 1.00 0.01 C
ATOM 8 O4' U B2854 -10.453 -33.912 -38.011 1.00 0.01 O
ATOM 9 C3' U B2854 -11.385 -35.547 -39.401 1.00 0.01 C
ATOM 10 O3' U B2854 -12.573 -36.106 -39.902 1.00 0.01 O
ATOM 11 C2' U B2854 -10.844 -34.426 -40.263 1.00 0.01 C
ATOM 12 O2' U B2854 -11.852 -33.482 -40.561 1.00 0.01 O
ATOM 13 C1' U B2854 -9.881 -33.792 -39.295 1.00 0.01 C
ATOM 14 N1 U B2854 -8.604 -34.497 -39.293 1.00 0.01 N
ATOM 15 C2 U B2854 -7.914 -34.521 -40.476 1.00 0.01 C
ATOM 16 O2 U B2854 -8.320 -33.984 -41.502 1.00 0.01 O
ATOM 17 N3 U B2854 -6.738 -35.201 -40.411 1.00 0.01 N
ATOM 18 C4 U B2854 -6.222 -35.824 -39.303 1.00 0.01 C
ATOM 19 O4 U B2854 -5.143 -36.408 -39.377 1.00 0.01 O
ATOM 20 C5 U B2854 -7.021 -35.747 -38.126 1.00 0.01 C
ATOM 21 C6 U B2854 -8.168 -35.104 -38.165 1.00 0.01 C
ATOM 22 P G B2855 -12.519 -37.489 -40.713 1.00 0.05 P
ATOM 23 OP1 G B2855 -13.916 -37.988 -40.803 1.00 0.05 O
ATOM 24 OP2 G B2855 -11.487 -38.335 -40.045 1.00 0.05 O
ATOM 25 O5' G B2855 -12.002 -37.061 -42.159 1.00 0.05 O
TER
Atoms:
OP1: (-4.796,-34.986,-34.014)
OP2: (-4.724,-34.094,-36.406)
C3': (-9.631,-33.286,-34.637)
C1': (-9.391,-30.996,-35.125)
C5': (-7.302,-33.433,-33.608)
O4': (-8.328,-31.376,-34.279)
C8: (-8.004,-31.721,-37.123)
O2': (-11.445,-31.774,-34.078)
C6: (-8.650,-29.352,-39.610)
C5: (-8.495,-30.200,-38.525)
C4: (-9.194,-29.892,-37.377)
P: (-5.118,-33.908,-34.973)
C4': (-8.588,-32.678,-33.714)
C2': (-10.458,-32.096,-35.063)
C2: (-10.064,-28.145,-38.284)
N1: (-9.466,-28.305,-39.464)
N3: (-10.006,-28.870,-37.174)
N6: (-8.020,-29.551,-40.767)
N7: (-7.744,-31.358,-38.367)
N9: (-8.866,-30.863,-36.482)
O5': (-6.665,-33.541,-34.874)
O3': (-10.389,-34.284,-34.019)
OP2: (-4.724,-34.094,-36.406)
C3': (-9.631,-33.286,-34.637)
C1': (-9.391,-30.996,-35.125)
C5': (-7.302,-33.433,-33.608)
O4': (-8.328,-31.376,-34.279)
C8: (-8.004,-31.721,-37.123)
O2': (-11.445,-31.774,-34.078)
C6: (-8.650,-29.352,-39.610)
C5: (-8.495,-30.200,-38.525)
C4: (-9.194,-29.892,-37.377)
P: (-5.118,-33.908,-34.973)
C4': (-8.588,-32.678,-33.714)
C2': (-10.458,-32.096,-35.063)
C2: (-10.064,-28.145,-38.284)
N1: (-9.466,-28.305,-39.464)
N3: (-10.006,-28.870,-37.174)
N6: (-8.020,-29.551,-40.767)
N7: (-7.744,-31.358,-38.367)
N9: (-8.866,-30.863,-36.482)
O5': (-6.665,-33.541,-34.874)
O3': (-10.389,-34.284,-34.019)
C4: (-6.222,-35.824,-39.303)
N3: (-6.738,-35.201,-40.411)
OP1: (-11.465,-36.501,-34.076)
OP2: (-8.915,-36.254,-34.068)
C2: (-7.914,-34.521,-40.476)
C1': (-9.881,-33.792,-39.295)
C3': (-11.385,-35.547,-39.401)
O5': (-10.291,-35.620,-36.108)
O4': (-10.453,-33.912,-38.011)
C5': (-11.509,-35.756,-36.823)
P: (-10.253,-35.777,-34.526)
C4': (-11.553,-34.862,-38.050)
C2': (-10.844,-34.426,-40.263)
O2': (-11.852,-33.482,-40.561)
N1: (-8.604,-34.497,-39.293)
O4: (-5.143,-36.408,-39.377)
O2: (-8.320,-33.984,-41.502)
C6: (-8.168,-35.104,-38.165)
C5: (-7.021,-35.747,-38.126)
O3': (-12.573,-36.106,-39.902)
N3: (-6.738,-35.201,-40.411)
OP1: (-11.465,-36.501,-34.076)
OP2: (-8.915,-36.254,-34.068)
C2: (-7.914,-34.521,-40.476)
C1': (-9.881,-33.792,-39.295)
C3': (-11.385,-35.547,-39.401)
O5': (-10.291,-35.620,-36.108)
O4': (-10.453,-33.912,-38.011)
C5': (-11.509,-35.756,-36.823)
P: (-10.253,-35.777,-34.526)
C4': (-11.553,-34.862,-38.050)
C2': (-10.844,-34.426,-40.263)
O2': (-11.852,-33.482,-40.561)
N1: (-8.604,-34.497,-39.293)
O4: (-5.143,-36.408,-39.377)
O2: (-8.320,-33.984,-41.502)
C6: (-8.168,-35.104,-38.165)
C5: (-7.021,-35.747,-38.126)
O3': (-12.573,-36.106,-39.902)
Image (generated by PyMOL):