Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A32:A33
Extra
PDB:
ATOM 1 O3' G A 31 7.945 -2.183 35.783 1.00108.33 O
ATOM 2 P A A 32 8.247 -1.946 37.325 1.00114.31 P
ATOM 3 OP1 A A 32 9.717 -2.120 37.461 1.00114.51 O
ATOM 4 OP2 A A 32 7.328 -2.834 38.085 1.00114.52 O
ATOM 5 O5' A A 32 7.827 -0.424 37.623 1.00113.77 O
ATOM 6 C5' A A 32 6.520 0.035 37.328 1.00113.99 C
ATOM 7 C4' A A 32 6.049 0.987 38.410 1.00114.30 C
ATOM 8 O4' A A 32 4.724 1.441 38.058 1.00113.20 O
ATOM 9 C3' A A 32 5.942 0.357 39.798 1.00115.14 C
ATOM 10 O3' A A 32 6.976 0.835 40.687 1.00117.97 O
ATOM 11 C2' A A 32 4.501 0.627 40.271 1.00114.09 C
ATOM 12 O2' A A 32 4.404 1.179 41.580 1.00113.90 O
ATOM 13 C1' A A 32 3.932 1.583 39.217 1.00112.18 C
ATOM 14 N9 A A 32 2.558 1.345 38.788 1.00109.24 N
ATOM 15 C8 A A 32 1.549 2.271 38.750 1.00108.97 C
ATOM 16 N7 A A 32 0.409 1.808 38.293 1.00108.23 N
ATOM 17 C5 A A 32 0.697 0.487 38.004 1.00107.17 C
ATOM 18 C6 A A 32 -0.100 -0.552 37.495 1.00105.47 C
ATOM 19 N6 A A 32 -1.380 -0.380 37.189 1.00105.06 N
ATOM 20 N1 A A 32 0.468 -1.759 37.320 1.00104.81 N
ATOM 21 C2 A A 32 1.765 -1.903 37.647 1.00106.02 C
ATOM 22 N3 A A 32 2.623 -1.001 38.140 1.00106.02 N
ATOM 23 C4 A A 32 2.017 0.185 38.299 1.00107.32 C
ATOM 24 P C A 33 7.175 2.338 41.219 1.00120.97 P
ATOM 25 OP1 C A 33 7.569 2.250 42.644 1.00120.65 O
ATOM 26 OP2 C A 33 6.016 3.180 40.844 1.00121.19 O
ATOM 27 O5' C A 33 8.425 2.828 40.338 1.00122.24 O
TER
ATOM 1 O3' A B 32 6.976 0.835 40.687 1.00117.97 O
ATOM 2 P C B 33 7.175 2.338 41.219 1.00120.97 P
ATOM 3 OP1 C B 33 7.569 2.250 42.644 1.00120.65 O
ATOM 4 OP2 C B 33 6.016 3.180 40.844 1.00121.19 O
ATOM 5 O5' C B 33 8.425 2.828 40.338 1.00122.24 O
ATOM 6 C5' C B 33 9.758 2.848 40.875 1.00123.06 C
ATOM 7 C4' C B 33 10.810 2.737 39.779 1.00123.48 C
ATOM 8 O4' C B 33 12.065 2.293 40.357 1.00123.65 O
ATOM 9 C3' C B 33 10.549 1.717 38.680 1.00123.59 C
ATOM 10 O3' C B 33 11.276 2.078 37.506 1.00124.08 O
ATOM 11 C2' C B 33 11.072 0.423 39.285 1.00123.45 C
ATOM 12 O2' C B 33 11.525 -0.487 38.306 1.00123.20 O
ATOM 13 C1' C B 33 12.257 0.906 40.125 1.00123.76 C
ATOM 14 N1 C B 33 12.484 0.248 41.471 1.00124.43 N
ATOM 15 C2 C B 33 13.784 0.257 42.022 1.00124.84 C
ATOM 16 O2 C B 33 14.724 0.781 41.419 1.00124.19 O
ATOM 17 N3 C B 33 14.004 -0.320 43.229 1.00125.97 N
ATOM 18 C4 C B 33 12.998 -0.887 43.896 1.00126.06 C
ATOM 19 N4 C B 33 13.273 -1.444 45.085 1.00126.69 N
ATOM 20 C5 C B 33 11.669 -0.905 43.367 1.00125.30 C
ATOM 21 C6 C B 33 11.455 -0.336 42.172 1.00124.63 C
ATOM 22 P G B 34 10.594 2.048 36.054 1.00123.53 P
ATOM 23 OP1 G B 34 9.618 0.934 36.016 1.00123.54 O
ATOM 24 OP2 G B 34 11.695 2.069 35.062 1.00123.38 O
ATOM 25 O5' G B 34 9.794 3.438 35.990 1.00122.66 O
TER
ATOM 2 P A A 32 8.247 -1.946 37.325 1.00114.31 P
ATOM 3 OP1 A A 32 9.717 -2.120 37.461 1.00114.51 O
ATOM 4 OP2 A A 32 7.328 -2.834 38.085 1.00114.52 O
ATOM 5 O5' A A 32 7.827 -0.424 37.623 1.00113.77 O
ATOM 6 C5' A A 32 6.520 0.035 37.328 1.00113.99 C
ATOM 7 C4' A A 32 6.049 0.987 38.410 1.00114.30 C
ATOM 8 O4' A A 32 4.724 1.441 38.058 1.00113.20 O
ATOM 9 C3' A A 32 5.942 0.357 39.798 1.00115.14 C
ATOM 10 O3' A A 32 6.976 0.835 40.687 1.00117.97 O
ATOM 11 C2' A A 32 4.501 0.627 40.271 1.00114.09 C
ATOM 12 O2' A A 32 4.404 1.179 41.580 1.00113.90 O
ATOM 13 C1' A A 32 3.932 1.583 39.217 1.00112.18 C
ATOM 14 N9 A A 32 2.558 1.345 38.788 1.00109.24 N
ATOM 15 C8 A A 32 1.549 2.271 38.750 1.00108.97 C
ATOM 16 N7 A A 32 0.409 1.808 38.293 1.00108.23 N
ATOM 17 C5 A A 32 0.697 0.487 38.004 1.00107.17 C
ATOM 18 C6 A A 32 -0.100 -0.552 37.495 1.00105.47 C
ATOM 19 N6 A A 32 -1.380 -0.380 37.189 1.00105.06 N
ATOM 20 N1 A A 32 0.468 -1.759 37.320 1.00104.81 N
ATOM 21 C2 A A 32 1.765 -1.903 37.647 1.00106.02 C
ATOM 22 N3 A A 32 2.623 -1.001 38.140 1.00106.02 N
ATOM 23 C4 A A 32 2.017 0.185 38.299 1.00107.32 C
ATOM 24 P C A 33 7.175 2.338 41.219 1.00120.97 P
ATOM 25 OP1 C A 33 7.569 2.250 42.644 1.00120.65 O
ATOM 26 OP2 C A 33 6.016 3.180 40.844 1.00121.19 O
ATOM 27 O5' C A 33 8.425 2.828 40.338 1.00122.24 O
TER
ATOM 1 O3' A B 32 6.976 0.835 40.687 1.00117.97 O
ATOM 2 P C B 33 7.175 2.338 41.219 1.00120.97 P
ATOM 3 OP1 C B 33 7.569 2.250 42.644 1.00120.65 O
ATOM 4 OP2 C B 33 6.016 3.180 40.844 1.00121.19 O
ATOM 5 O5' C B 33 8.425 2.828 40.338 1.00122.24 O
ATOM 6 C5' C B 33 9.758 2.848 40.875 1.00123.06 C
ATOM 7 C4' C B 33 10.810 2.737 39.779 1.00123.48 C
ATOM 8 O4' C B 33 12.065 2.293 40.357 1.00123.65 O
ATOM 9 C3' C B 33 10.549 1.717 38.680 1.00123.59 C
ATOM 10 O3' C B 33 11.276 2.078 37.506 1.00124.08 O
ATOM 11 C2' C B 33 11.072 0.423 39.285 1.00123.45 C
ATOM 12 O2' C B 33 11.525 -0.487 38.306 1.00123.20 O
ATOM 13 C1' C B 33 12.257 0.906 40.125 1.00123.76 C
ATOM 14 N1 C B 33 12.484 0.248 41.471 1.00124.43 N
ATOM 15 C2 C B 33 13.784 0.257 42.022 1.00124.84 C
ATOM 16 O2 C B 33 14.724 0.781 41.419 1.00124.19 O
ATOM 17 N3 C B 33 14.004 -0.320 43.229 1.00125.97 N
ATOM 18 C4 C B 33 12.998 -0.887 43.896 1.00126.06 C
ATOM 19 N4 C B 33 13.273 -1.444 45.085 1.00126.69 N
ATOM 20 C5 C B 33 11.669 -0.905 43.367 1.00125.30 C
ATOM 21 C6 C B 33 11.455 -0.336 42.172 1.00124.63 C
ATOM 22 P G B 34 10.594 2.048 36.054 1.00123.53 P
ATOM 23 OP1 G B 34 9.618 0.934 36.016 1.00123.54 O
ATOM 24 OP2 G B 34 11.695 2.069 35.062 1.00123.38 O
ATOM 25 O5' G B 34 9.794 3.438 35.990 1.00122.66 O
TER
Atoms:
OP1: (9.717,-2.120,37.461)
OP2: (7.328,-2.834,38.085)
C3': (5.942,0.357,39.798)
C1': (3.932,1.583,39.217)
C5': (6.520,0.035,37.328)
O4': (4.724,1.441,38.058)
C8: (1.549,2.271,38.750)
O2': (4.404,1.179,41.580)
C6: (-0.100,-0.552,37.495)
C5: (0.697,0.487,38.004)
C4: (2.017,0.185,38.299)
P: (8.247,-1.946,37.325)
C4': (6.049,0.987,38.410)
C2': (4.501,0.627,40.271)
C2: (1.765,-1.903,37.647)
N1: (0.468,-1.759,37.320)
N3: (2.623,-1.001,38.140)
N6: (-1.380,-0.380,37.189)
N7: (0.409,1.808,38.293)
N9: (2.558,1.345,38.788)
O5': (7.827,-0.424,37.623)
O3': (6.976,0.835,40.687)
OP2: (7.328,-2.834,38.085)
C3': (5.942,0.357,39.798)
C1': (3.932,1.583,39.217)
C5': (6.520,0.035,37.328)
O4': (4.724,1.441,38.058)
C8: (1.549,2.271,38.750)
O2': (4.404,1.179,41.580)
C6: (-0.100,-0.552,37.495)
C5: (0.697,0.487,38.004)
C4: (2.017,0.185,38.299)
P: (8.247,-1.946,37.325)
C4': (6.049,0.987,38.410)
C2': (4.501,0.627,40.271)
C2: (1.765,-1.903,37.647)
N1: (0.468,-1.759,37.320)
N3: (2.623,-1.001,38.140)
N6: (-1.380,-0.380,37.189)
N7: (0.409,1.808,38.293)
N9: (2.558,1.345,38.788)
O5': (7.827,-0.424,37.623)
O3': (6.976,0.835,40.687)
C2: (13.784,0.257,42.022)
OP1: (7.569,2.250,42.644)
OP2: (6.016,3.180,40.844)
C4: (12.998,-0.887,43.896)
O5': (8.425,2.828,40.338)
C3': (10.549,1.717,38.680)
C1': (12.257,0.906,40.125)
O4': (12.065,2.293,40.357)
C5': (9.758,2.848,40.875)
P: (7.175,2.338,41.219)
O2: (14.724,0.781,41.419)
C4': (10.810,2.737,39.779)
C2': (11.072,0.423,39.285)
O2': (11.525,-0.487,38.306)
N1: (12.484,0.248,41.471)
N3: (14.004,-0.320,43.229)
N4: (13.273,-1.444,45.085)
C6: (11.455,-0.336,42.172)
C5: (11.669,-0.905,43.367)
O3': (11.276,2.078,37.506)
OP1: (7.569,2.250,42.644)
OP2: (6.016,3.180,40.844)
C4: (12.998,-0.887,43.896)
O5': (8.425,2.828,40.338)
C3': (10.549,1.717,38.680)
C1': (12.257,0.906,40.125)
O4': (12.065,2.293,40.357)
C5': (9.758,2.848,40.875)
P: (7.175,2.338,41.219)
O2: (14.724,0.781,41.419)
C4': (10.810,2.737,39.779)
C2': (11.072,0.423,39.285)
O2': (11.525,-0.487,38.306)
N1: (12.484,0.248,41.471)
N3: (14.004,-0.320,43.229)
N4: (13.273,-1.444,45.085)
C6: (11.455,-0.336,42.172)
C5: (11.669,-0.905,43.367)
O3': (11.276,2.078,37.506)
Image (generated by PyMOL):