ClaRNA

Doublet info:

Details

Nucleotide types: GC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A1007:A1042

Extra

PDB:
ATOM 1 O3' U A1006 46.366 96.315 105.072 1.00 35.78 O
ATOM 2 P G A1007 46.854 95.198 106.103 1.00 35.34 P
ATOM 3 OP1 G A1007 47.117 95.885 107.391 1.00 36.56 O
ATOM 4 OP2 G A1007 47.952 94.474 105.426 1.00 35.81 O
ATOM 5 O5' G A1007 45.561 94.289 106.264 1.00 34.69 O
ATOM 6 C5' G A1007 44.394 94.833 106.893 1.00 34.65 C
ATOM 7 C4' G A1007 43.259 93.836 106.904 1.00 36.67 C
ATOM 8 O4' G A1007 42.749 93.600 105.566 1.00 38.13 O
ATOM 9 C3' G A1007 43.559 92.452 107.440 1.00 35.14 C
ATOM 10 O3' G A1007 43.577 92.456 108.843 1.00 35.44 O
ATOM 11 C2' G A1007 42.420 91.628 106.852 1.00 36.04 C
ATOM 12 O2' G A1007 41.173 91.789 107.496 1.00 35.48 O
ATOM 13 C1' G A1007 42.299 92.262 105.470 1.00 35.32 C
ATOM 14 N9 G A1007 43.126 91.596 104.483 1.00 34.66 N
ATOM 15 C8 G A1007 44.358 91.983 104.010 1.00 34.58 C
ATOM 16 N7 G A1007 44.806 91.204 103.069 1.00 34.37 N
ATOM 17 C5 G A1007 43.816 90.240 102.937 1.00 33.94 C
ATOM 18 C6 G A1007 43.718 89.142 102.077 1.00 34.03 C
ATOM 19 O6 G A1007 44.522 88.757 101.224 1.00 35.10 O
ATOM 20 N1 G A1007 42.527 88.452 102.275 1.00 33.45 N
ATOM 21 C2 G A1007 41.557 88.780 103.189 1.00 34.18 C
ATOM 22 N2 G A1007 40.444 88.016 103.195 1.00 38.04 N
ATOM 23 N3 G A1007 41.654 89.779 104.012 1.00 32.45 N
ATOM 24 C4 G A1007 42.790 90.469 103.825 1.00 33.90 C
ATOM 25 P C A1008 44.547 91.451 109.611 1.00 36.25 P
ATOM 26 OP1 C A1008 44.466 91.766 111.050 1.00 35.45 O
ATOM 27 OP2 C A1008 45.856 91.446 108.931 1.00 38.05 O
ATOM 28 O5' C A1008 43.921 90.025 109.319 1.00 36.25 O
TER

ATOM 1 O3' A B1041 38.169 96.013 103.576 1.00 37.52 O
ATOM 2 P C B1042 38.833 94.959 104.581 1.00 38.59 P
ATOM 3 OP1 C B1042 40.293 94.966 104.398 1.00 40.42 O
ATOM 4 OP2 C B1042 38.101 93.683 104.475 1.00 38.07 O
ATOM 5 O5' C B1042 38.527 95.548 106.024 1.00 38.10 O
ATOM 6 C5' C B1042 38.962 94.824 107.182 1.00 37.28 C
ATOM 7 C4' C B1042 37.995 94.991 108.329 1.00 37.46 C
ATOM 8 O4' C B1042 38.025 96.355 108.807 1.00 38.04 O
ATOM 9 C3' C B1042 36.524 94.703 108.087 1.00 36.14 C
ATOM 10 O3' C B1042 36.265 93.289 108.121 1.00 37.26 O
ATOM 11 C2' C B1042 35.890 95.452 109.259 1.00 36.30 C
ATOM 12 O2' C B1042 36.137 94.835 110.504 1.00 34.61 O
ATOM 13 C1' C B1042 36.746 96.712 109.304 1.00 36.93 C
ATOM 14 N1 C B1042 36.224 97.806 108.475 1.00 38.70 N
ATOM 15 C2 C B1042 35.108 98.500 108.897 1.00 38.37 C
ATOM 16 O2 C B1042 34.566 98.179 109.972 1.00 39.88 O
ATOM 17 N3 C B1042 34.637 99.502 108.127 1.00 38.44 N
ATOM 18 C4 C B1042 35.243 99.808 106.975 1.00 39.44 C
ATOM 19 N4 C B1042 34.733 100.789 106.225 1.00 40.25 N
ATOM 20 C5 C B1042 36.388 99.120 106.534 1.00 39.64 C
ATOM 21 C6 C B1042 36.837 98.134 107.299 1.00 39.81 C
ATOM 22 P C B1043 34.988 92.701 107.361 1.00 36.65 P
ATOM 23 OP1 C B1043 34.959 91.235 107.533 1.00 37.21 O
ATOM 24 OP2 C B1043 35.021 93.273 106.011 1.00 35.24 O
ATOM 25 O5' C B1043 33.780 93.270 108.213 1.00 34.98 O
TER

Atoms:
OP1: (47.117,95.885,107.391)
OP2: (47.952,94.474,105.426)
C3': (43.559,92.452,107.440)
C1': (42.299,92.262,105.470)
C5': (44.394,94.833,106.893)
O6: (44.522,88.757,101.224)
O4': (42.749,93.600,105.566)
C8: (44.358,91.983,104.010)
C2: (41.557,88.780,103.189)
C6: (43.718,89.142,102.077)
C5: (43.816,90.240,102.937)
C4: (42.790,90.469,103.825)
P: (46.854,95.198,106.103)
C4': (43.259,93.836,106.904)
C2': (42.420,91.628,106.852)
O2': (41.173,91.789,107.496)
N1: (42.527,88.452,102.275)
N2: (40.444,88.016,103.195)
N3: (41.654,89.779,104.012)
N7: (44.806,91.204,103.069)
N9: (43.126,91.596,104.483)
O5': (45.561,94.289,106.264)
O3': (43.577,92.456,108.843)
C2: (35.108,98.500,108.897)
OP1: (40.293,94.966,104.398)
OP2: (38.101,93.683,104.475)
C4: (35.243,99.808,106.975)
O5': (38.527,95.548,106.024)
C3': (36.524,94.703,108.087)
C1': (36.746,96.712,109.304)
O4': (38.025,96.355,108.807)
C5': (38.962,94.824,107.182)
P: (38.833,94.959,104.581)
O2: (34.566,98.179,109.972)
C4': (37.995,94.991,108.329)
C2': (35.890,95.452,109.259)
O2': (36.137,94.835,110.504)
N1: (36.224,97.806,108.475)
N3: (34.637,99.502,108.127)
N4: (34.733,100.789,106.225)
C6: (36.837,98.134,107.299)
C5: (36.388,99.120,106.534)
O3': (36.265,93.289,108.121)
Image (generated by PyMOL):
PyMOL image
show in jmol