ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQN:0316:0317

Extra

PDB:
ATOM 1 O3' A A 315 14.569 125.994 20.757 1.00 53.51 O
ATOM 2 P U A 316 14.147 125.425 19.318 1.00 54.32 P
ATOM 3 OP1 U A 316 14.311 126.549 18.366 1.00 55.30 O
ATOM 4 OP2 U A 316 12.836 124.732 19.417 1.00 52.49 O
ATOM 5 O5' U A 316 15.279 124.349 19.018 1.00 53.59 O
ATOM 6 C5' U A 316 15.490 123.259 19.921 1.00 54.26 C
ATOM 7 C4' U A 316 16.946 123.164 20.302 1.00 55.50 C
ATOM 8 O4' U A 316 17.709 122.693 19.163 1.00 57.83 O
ATOM 9 C3' U A 316 17.621 124.446 20.776 1.00 56.27 C
ATOM 10 O3' U A 316 18.574 124.123 21.791 1.00 55.97 O
ATOM 11 C2' U A 316 18.346 124.918 19.515 1.00 57.63 C
ATOM 12 O2' U A 316 19.481 125.713 19.784 1.00 57.81 O
ATOM 13 C1' U A 316 18.770 123.585 18.899 1.00 57.70 C
ATOM 14 N1 U A 316 19.009 123.591 17.446 1.00 57.98 N
ATOM 15 C2 U A 316 20.168 122.986 16.982 1.00 57.52 C
ATOM 16 O2 U A 316 20.991 122.467 17.716 1.00 57.41 O
ATOM 17 N3 U A 316 20.331 123.008 15.620 1.00 58.42 N
ATOM 18 C4 U A 316 19.477 123.558 14.688 1.00 59.50 C
ATOM 19 O4 U A 316 19.767 123.489 13.490 1.00 61.53 O
ATOM 20 C5 U A 316 18.304 124.170 15.238 1.00 58.61 C
ATOM 21 C6 U A 316 18.114 124.167 16.564 1.00 59.16 C
ATOM 22 P A A 317 18.125 124.102 23.342 1.00 54.06 P
ATOM 23 OP1 A A 317 19.012 123.096 23.987 1.00 55.10 O
ATOM 24 OP2 A A 317 16.652 123.944 23.427 1.00 50.66 O
ATOM 25 O5' A A 317 18.487 125.556 23.903 1.00 54.20 O
TER

ATOM 1 O3' U B 316 18.574 124.123 21.791 1.00 55.97 O
ATOM 2 P A B 317 18.125 124.102 23.342 1.00 54.06 P
ATOM 3 OP1 A B 317 19.012 123.096 23.987 1.00 55.10 O
ATOM 4 OP2 A B 317 16.652 123.944 23.427 1.00 50.66 O
ATOM 5 O5' A B 317 18.487 125.556 23.903 1.00 54.20 O
ATOM 6 C5' A B 317 19.641 125.760 24.760 1.00 51.76 C
ATOM 7 C4' A B 317 19.609 127.138 25.391 1.00 50.54 C
ATOM 8 O4' A B 317 19.521 128.137 24.337 1.00 52.49 O
ATOM 9 C3' A B 317 18.453 127.435 26.343 1.00 49.31 C
ATOM 10 O3' A B 317 18.848 128.446 27.281 1.00 49.71 O
ATOM 11 C2' A B 317 17.444 128.095 25.413 1.00 49.49 C
ATOM 12 O2' A B 317 16.524 128.919 26.101 1.00 46.13 O
ATOM 13 C1' A B 317 18.376 128.935 24.540 1.00 51.62 C
ATOM 14 N9 A B 317 17.859 129.340 23.234 1.00 54.59 N
ATOM 15 C8 A B 317 17.134 128.602 22.331 1.00 54.37 C
ATOM 16 N7 A B 317 16.829 129.256 21.240 1.00 55.98 N
ATOM 17 C5 A B 317 17.392 130.509 21.432 1.00 57.02 C
ATOM 18 C6 A B 317 17.427 131.666 20.629 1.00 57.85 C
ATOM 19 N6 A B 317 16.872 131.742 19.416 1.00 56.24 N
ATOM 20 N1 A B 317 18.064 132.752 21.121 1.00 57.75 N
ATOM 21 C2 A B 317 18.628 132.671 22.329 1.00 57.29 C
ATOM 22 N3 A B 317 18.669 131.641 23.173 1.00 58.19 N
ATOM 23 C4 A B 317 18.024 130.577 22.658 1.00 57.00 C
ATOM 24 P C B 318 19.653 128.062 28.625 1.00 48.63 P
ATOM 25 OP1 C B 318 19.613 129.306 29.437 1.00 45.99 O
ATOM 26 OP2 C B 318 20.966 127.445 28.288 1.00 42.61 O
ATOM 27 O5' C B 318 18.761 126.941 29.332 1.00 49.01 O
TER

Atoms:
C4: (19.477,123.558,14.688)
N3: (20.331,123.008,15.620)
OP1: (14.311,126.549,18.366)
OP2: (12.836,124.732,19.417)
C2: (20.168,122.986,16.982)
C1': (18.770,123.585,18.899)
C3': (17.621,124.446,20.776)
O5': (15.279,124.349,19.018)
O4': (17.709,122.693,19.163)
C5': (15.490,123.259,19.921)
P: (14.147,125.425,19.318)
C4': (16.946,123.164,20.302)
C2': (18.346,124.918,19.515)
O2': (19.481,125.713,19.784)
N1: (19.009,123.591,17.446)
O4: (19.767,123.489,13.490)
O2: (20.991,122.467,17.716)
C6: (18.114,124.167,16.564)
C5: (18.304,124.170,15.238)
O3': (18.574,124.123,21.791)
OP1: (19.012,123.096,23.987)
OP2: (16.652,123.944,23.427)
C3': (18.453,127.435,26.343)
C1': (18.376,128.935,24.540)
C5': (19.641,125.760,24.760)
O4': (19.521,128.137,24.337)
C8: (17.134,128.602,22.331)
O2': (16.524,128.919,26.101)
C6: (17.427,131.666,20.629)
C5: (17.392,130.509,21.432)
C4: (18.024,130.577,22.658)
P: (18.125,124.102,23.342)
C4': (19.609,127.138,25.391)
C2': (17.444,128.095,25.413)
C2: (18.628,132.671,22.329)
N1: (18.064,132.752,21.121)
N3: (18.669,131.641,23.173)
N6: (16.872,131.742,19.416)
N7: (16.829,129.256,21.240)
N9: (17.859,129.340,23.234)
O5': (18.487,125.556,23.903)
O3': (18.848,128.446,27.281)
Image (generated by PyMOL):
PyMOL image
show in jmol