Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NVI:E15:E16
Extra
PDB:
ATOM 1 O3' C A 14 2.533 -1.622 2.504 1.00 78.79 O
ATOM 2 P G A 15 4.103 -1.591 2.125 1.00 70.92 P
ATOM 3 OP1 G A 15 4.880 -1.663 3.416 1.00 64.90 O
ATOM 4 OP2 G A 15 4.313 -0.428 1.210 1.00 77.00 O
ATOM 5 O5' G A 15 4.285 -2.938 1.314 1.00 66.07 O
ATOM 6 C5' G A 15 3.530 -3.162 0.143 1.00 67.81 C
ATOM 7 C4' G A 15 3.983 -4.392 -0.569 1.00 66.49 C
ATOM 8 O4' G A 15 3.006 -4.739 -1.578 1.00 67.63 O
ATOM 9 C3' G A 15 5.309 -4.271 -1.295 1.00 64.98 C
ATOM 10 O3' G A 15 5.904 -5.564 -1.341 1.00 64.36 O
ATOM 11 C2' G A 15 4.862 -3.883 -2.697 1.00 68.38 C
ATOM 12 O2' G A 15 5.815 -4.156 -3.704 1.00 74.50 O
ATOM 13 C1' G A 15 3.623 -4.758 -2.841 1.00 69.18 C
ATOM 14 N9 G A 15 2.651 -4.301 -3.834 1.00 69.31 N
ATOM 15 C8 G A 15 2.204 -5.043 -4.903 1.00 73.04 C
ATOM 16 N7 G A 15 1.314 -4.429 -5.637 1.00 70.92 N
ATOM 17 C5 G A 15 1.157 -3.209 -4.996 1.00 64.56 C
ATOM 18 C6 G A 15 0.327 -2.114 -5.334 1.00 67.31 C
ATOM 19 O6 G A 15 -0.440 -2.047 -6.308 1.00 69.16 O
ATOM 20 N1 G A 15 0.452 -1.062 -4.418 1.00 61.28 N
ATOM 21 C2 G A 15 1.291 -1.064 -3.329 1.00 67.26 C
ATOM 22 N2 G A 15 1.300 0.028 -2.548 1.00 68.99 N
ATOM 23 N3 G A 15 2.082 -2.082 -3.015 1.00 71.62 N
ATOM 24 C4 G A 15 1.968 -3.113 -3.883 1.00 67.26 C
ATOM 25 P U A 16 7.431 -5.790 -0.917 1.00 70.68 P
ATOM 26 OP1 U A 16 8.175 -4.579 -1.312 1.00 62.61 O
ATOM 27 OP2 U A 16 7.833 -7.097 -1.493 1.00 69.45 O
ATOM 28 O5' U A 16 7.376 -5.894 0.682 1.00 69.31 O
TER
ATOM 1 O3' G B 15 5.904 -5.564 -1.341 1.00 64.36 O
ATOM 2 P U B 16 7.431 -5.790 -0.917 1.00 70.68 P
ATOM 3 OP1 U B 16 8.175 -4.579 -1.312 1.00 62.61 O
ATOM 4 OP2 U B 16 7.833 -7.097 -1.493 1.00 69.45 O
ATOM 5 O5' U B 16 7.376 -5.894 0.682 1.00 69.31 O
ATOM 6 C5' U B 16 6.846 -7.052 1.333 1.00 66.92 C
ATOM 7 C4' U B 16 6.800 -6.871 2.828 1.00 67.99 C
ATOM 8 O4' U B 16 8.147 -6.582 3.298 1.00 73.04 O
ATOM 9 C3' U B 16 5.931 -5.713 3.314 1.00 73.61 C
ATOM 10 O3' U B 16 5.404 -6.008 4.618 1.00 71.61 O
ATOM 11 C2' U B 16 6.947 -4.569 3.419 1.00 70.51 C
ATOM 12 O2' U B 16 6.570 -3.510 4.283 1.00 75.96 O
ATOM 13 C1' U B 16 8.183 -5.309 3.923 1.00 69.19 C
ATOM 14 N1 U B 16 9.464 -4.678 3.549 1.00 74.24 N
ATOM 15 C2 U B 16 10.384 -4.243 4.500 1.00 73.25 C
ATOM 16 O2 U B 16 10.200 -4.300 5.701 1.00 78.23 O
ATOM 17 N3 U B 16 11.553 -3.727 3.992 1.00 71.42 N
ATOM 18 C4 U B 16 11.895 -3.610 2.657 1.00 75.47 C
ATOM 19 O4 U B 16 12.974 -3.123 2.319 1.00 77.41 O
ATOM 20 C5 U B 16 10.904 -4.087 1.751 1.00 76.21 C
ATOM 21 C6 U B 16 9.759 -4.600 2.212 1.00 75.53 C
ATOM 22 P G B 17 4.059 -6.882 4.788 1.00 68.24 P
ATOM 23 OP1 G B 17 3.537 -6.642 6.166 1.00 71.85 O
ATOM 24 OP2 G B 17 4.404 -8.258 4.400 1.00 75.34 O
ATOM 25 O5' G B 17 3.064 -6.247 3.713 1.00 73.62 O
TER
ATOM 2 P G A 15 4.103 -1.591 2.125 1.00 70.92 P
ATOM 3 OP1 G A 15 4.880 -1.663 3.416 1.00 64.90 O
ATOM 4 OP2 G A 15 4.313 -0.428 1.210 1.00 77.00 O
ATOM 5 O5' G A 15 4.285 -2.938 1.314 1.00 66.07 O
ATOM 6 C5' G A 15 3.530 -3.162 0.143 1.00 67.81 C
ATOM 7 C4' G A 15 3.983 -4.392 -0.569 1.00 66.49 C
ATOM 8 O4' G A 15 3.006 -4.739 -1.578 1.00 67.63 O
ATOM 9 C3' G A 15 5.309 -4.271 -1.295 1.00 64.98 C
ATOM 10 O3' G A 15 5.904 -5.564 -1.341 1.00 64.36 O
ATOM 11 C2' G A 15 4.862 -3.883 -2.697 1.00 68.38 C
ATOM 12 O2' G A 15 5.815 -4.156 -3.704 1.00 74.50 O
ATOM 13 C1' G A 15 3.623 -4.758 -2.841 1.00 69.18 C
ATOM 14 N9 G A 15 2.651 -4.301 -3.834 1.00 69.31 N
ATOM 15 C8 G A 15 2.204 -5.043 -4.903 1.00 73.04 C
ATOM 16 N7 G A 15 1.314 -4.429 -5.637 1.00 70.92 N
ATOM 17 C5 G A 15 1.157 -3.209 -4.996 1.00 64.56 C
ATOM 18 C6 G A 15 0.327 -2.114 -5.334 1.00 67.31 C
ATOM 19 O6 G A 15 -0.440 -2.047 -6.308 1.00 69.16 O
ATOM 20 N1 G A 15 0.452 -1.062 -4.418 1.00 61.28 N
ATOM 21 C2 G A 15 1.291 -1.064 -3.329 1.00 67.26 C
ATOM 22 N2 G A 15 1.300 0.028 -2.548 1.00 68.99 N
ATOM 23 N3 G A 15 2.082 -2.082 -3.015 1.00 71.62 N
ATOM 24 C4 G A 15 1.968 -3.113 -3.883 1.00 67.26 C
ATOM 25 P U A 16 7.431 -5.790 -0.917 1.00 70.68 P
ATOM 26 OP1 U A 16 8.175 -4.579 -1.312 1.00 62.61 O
ATOM 27 OP2 U A 16 7.833 -7.097 -1.493 1.00 69.45 O
ATOM 28 O5' U A 16 7.376 -5.894 0.682 1.00 69.31 O
TER
ATOM 1 O3' G B 15 5.904 -5.564 -1.341 1.00 64.36 O
ATOM 2 P U B 16 7.431 -5.790 -0.917 1.00 70.68 P
ATOM 3 OP1 U B 16 8.175 -4.579 -1.312 1.00 62.61 O
ATOM 4 OP2 U B 16 7.833 -7.097 -1.493 1.00 69.45 O
ATOM 5 O5' U B 16 7.376 -5.894 0.682 1.00 69.31 O
ATOM 6 C5' U B 16 6.846 -7.052 1.333 1.00 66.92 C
ATOM 7 C4' U B 16 6.800 -6.871 2.828 1.00 67.99 C
ATOM 8 O4' U B 16 8.147 -6.582 3.298 1.00 73.04 O
ATOM 9 C3' U B 16 5.931 -5.713 3.314 1.00 73.61 C
ATOM 10 O3' U B 16 5.404 -6.008 4.618 1.00 71.61 O
ATOM 11 C2' U B 16 6.947 -4.569 3.419 1.00 70.51 C
ATOM 12 O2' U B 16 6.570 -3.510 4.283 1.00 75.96 O
ATOM 13 C1' U B 16 8.183 -5.309 3.923 1.00 69.19 C
ATOM 14 N1 U B 16 9.464 -4.678 3.549 1.00 74.24 N
ATOM 15 C2 U B 16 10.384 -4.243 4.500 1.00 73.25 C
ATOM 16 O2 U B 16 10.200 -4.300 5.701 1.00 78.23 O
ATOM 17 N3 U B 16 11.553 -3.727 3.992 1.00 71.42 N
ATOM 18 C4 U B 16 11.895 -3.610 2.657 1.00 75.47 C
ATOM 19 O4 U B 16 12.974 -3.123 2.319 1.00 77.41 O
ATOM 20 C5 U B 16 10.904 -4.087 1.751 1.00 76.21 C
ATOM 21 C6 U B 16 9.759 -4.600 2.212 1.00 75.53 C
ATOM 22 P G B 17 4.059 -6.882 4.788 1.00 68.24 P
ATOM 23 OP1 G B 17 3.537 -6.642 6.166 1.00 71.85 O
ATOM 24 OP2 G B 17 4.404 -8.258 4.400 1.00 75.34 O
ATOM 25 O5' G B 17 3.064 -6.247 3.713 1.00 73.62 O
TER
Atoms:
OP1: (4.880,-1.663,3.416)
OP2: (4.313,-0.428,1.210)
C3': (5.309,-4.271,-1.295)
C1': (3.623,-4.758,-2.841)
C5': (3.530,-3.162,0.143)
O6: (-0.440,-2.047,-6.308)
O4': (3.006,-4.739,-1.578)
C8: (2.204,-5.043,-4.903)
C2: (1.291,-1.064,-3.329)
C6: (0.327,-2.114,-5.334)
C5: (1.157,-3.209,-4.996)
C4: (1.968,-3.113,-3.883)
P: (4.103,-1.591,2.125)
C4': (3.983,-4.392,-0.569)
C2': (4.862,-3.883,-2.697)
O2': (5.815,-4.156,-3.704)
N1: (0.452,-1.062,-4.418)
N2: (1.300,0.028,-2.548)
N3: (2.082,-2.082,-3.015)
N7: (1.314,-4.429,-5.637)
N9: (2.651,-4.301,-3.834)
O5': (4.285,-2.938,1.314)
O3': (5.904,-5.564,-1.341)
OP2: (4.313,-0.428,1.210)
C3': (5.309,-4.271,-1.295)
C1': (3.623,-4.758,-2.841)
C5': (3.530,-3.162,0.143)
O6: (-0.440,-2.047,-6.308)
O4': (3.006,-4.739,-1.578)
C8: (2.204,-5.043,-4.903)
C2: (1.291,-1.064,-3.329)
C6: (0.327,-2.114,-5.334)
C5: (1.157,-3.209,-4.996)
C4: (1.968,-3.113,-3.883)
P: (4.103,-1.591,2.125)
C4': (3.983,-4.392,-0.569)
C2': (4.862,-3.883,-2.697)
O2': (5.815,-4.156,-3.704)
N1: (0.452,-1.062,-4.418)
N2: (1.300,0.028,-2.548)
N3: (2.082,-2.082,-3.015)
N7: (1.314,-4.429,-5.637)
N9: (2.651,-4.301,-3.834)
O5': (4.285,-2.938,1.314)
O3': (5.904,-5.564,-1.341)
C4: (11.895,-3.610,2.657)
N3: (11.553,-3.727,3.992)
OP1: (8.175,-4.579,-1.312)
OP2: (7.833,-7.097,-1.493)
C2: (10.384,-4.243,4.500)
C1': (8.183,-5.309,3.923)
C3': (5.931,-5.713,3.314)
O5': (7.376,-5.894,0.682)
O4': (8.147,-6.582,3.298)
C5': (6.846,-7.052,1.333)
P: (7.431,-5.790,-0.917)
C4': (6.800,-6.871,2.828)
C2': (6.947,-4.569,3.419)
O2': (6.570,-3.510,4.283)
N1: (9.464,-4.678,3.549)
O4: (12.974,-3.123,2.319)
O2: (10.200,-4.300,5.701)
C6: (9.759,-4.600,2.212)
C5: (10.904,-4.087,1.751)
O3': (5.404,-6.008,4.618)
N3: (11.553,-3.727,3.992)
OP1: (8.175,-4.579,-1.312)
OP2: (7.833,-7.097,-1.493)
C2: (10.384,-4.243,4.500)
C1': (8.183,-5.309,3.923)
C3': (5.931,-5.713,3.314)
O5': (7.376,-5.894,0.682)
O4': (8.147,-6.582,3.298)
C5': (6.846,-7.052,1.333)
P: (7.431,-5.790,-0.917)
C4': (6.800,-6.871,2.828)
C2': (6.947,-4.569,3.419)
O2': (6.570,-3.510,4.283)
N1: (9.464,-4.678,3.549)
O4: (12.974,-3.123,2.319)
O2: (10.200,-4.300,5.701)
C6: (9.759,-4.600,2.212)
C5: (10.904,-4.087,1.751)
O3': (5.404,-6.008,4.618)
Image (generated by PyMOL):