Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2Y8W:B8:B9
Extra
PDB:
ATOM 1 O3' G A 7 -1.506 35.649 -9.530 1.00 37.46 O
ATOM 2 P C A 8 -0.038 36.223 -9.214 1.00 41.31 P
ATOM 3 OP1 C A 8 0.870 35.063 -9.069 1.00 37.85 O
ATOM 4 OP2 C A 8 -0.178 37.165 -8.071 1.00 42.99 O
ATOM 5 O5' C A 8 0.323 37.022 -10.541 1.00 75.20 O
ATOM 6 C5' C A 8 -0.669 37.757 -11.239 1.00 75.24 C
ATOM 7 C4' C A 8 -0.213 39.159 -11.548 1.00 77.77 C
ATOM 8 O4' C A 8 -1.385 40.006 -11.618 1.00 80.19 O
ATOM 9 C3' C A 8 0.727 39.776 -10.512 1.00 82.96 C
ATOM 10 O3' C A 8 1.800 40.490 -11.139 1.00 87.75 O
ATOM 11 C2' C A 8 -0.155 40.748 -9.729 1.00 84.08 C
ATOM 12 O2' C A 8 0.500 41.930 -9.319 1.00 84.30 O
ATOM 13 C1' C A 8 -1.306 41.061 -10.683 1.00 81.17 C
ATOM 14 N1 C A 8 -2.607 41.146 -9.986 1.00 75.99 N
ATOM 15 C2 C A 8 -3.798 41.474 -10.635 1.00 77.00 C
ATOM 16 O2 C A 8 -3.785 41.711 -11.851 1.00 78.09 O
ATOM 17 N3 C A 8 -4.938 41.518 -9.900 1.00 74.34 N
ATOM 18 C4 C A 8 -4.924 41.258 -8.587 1.00 69.13 C
ATOM 19 N4 C A 8 -6.076 41.319 -7.910 1.00 61.69 N
ATOM 20 C5 C A 8 -3.719 40.919 -7.910 1.00 67.27 C
ATOM 21 C6 C A 8 -2.604 40.877 -8.645 1.00 69.13 C
ATOM 22 P G A 9 1.976 40.507 -12.735 1.00 45.64 P
ATOM 23 OP1 G A 9 2.282 39.127 -13.158 1.00 27.96 O
ATOM 24 OP2 G A 9 0.777 41.184 -13.297 1.00 45.08 O
ATOM 25 O5' G A 9 3.264 41.427 -12.927 1.00 48.85 O
TER
ATOM 1 O3' C B 8 1.800 40.490 -11.139 1.00 87.75 O
ATOM 2 P G B 9 1.976 40.507 -12.735 1.00 45.64 P
ATOM 3 OP1 G B 9 2.282 39.127 -13.158 1.00 27.96 O
ATOM 4 OP2 G B 9 0.777 41.184 -13.297 1.00 45.08 O
ATOM 5 O5' G B 9 3.264 41.427 -12.927 1.00 48.85 O
ATOM 6 C5' G B 9 3.217 42.812 -12.611 1.00 47.76 C
ATOM 7 C4' G B 9 4.474 43.287 -11.919 1.00 46.30 C
ATOM 8 O4' G B 9 4.412 42.968 -10.499 1.00 46.80 O
ATOM 9 C3' G B 9 5.791 42.699 -12.432 1.00 36.36 C
ATOM 10 O3' G B 9 6.797 43.706 -12.367 1.00 32.47 O
ATOM 11 C2' G B 9 6.107 41.640 -11.383 1.00 36.04 C
ATOM 12 O2' G B 9 7.475 41.300 -11.288 1.00 32.08 O
ATOM 13 C1' G B 9 5.618 42.340 -10.125 1.00 34.64 C
ATOM 14 N9 G B 9 5.366 41.452 -8.994 1.00 34.85 N
ATOM 15 C8 G B 9 4.885 40.171 -9.006 1.00 32.62 C
ATOM 16 N7 G B 9 4.811 39.669 -7.807 1.00 35.82 N
ATOM 17 C5 G B 9 5.278 40.666 -6.959 1.00 36.66 C
ATOM 18 C6 G B 9 5.432 40.703 -5.543 1.00 39.47 C
ATOM 19 O6 G B 9 5.179 39.825 -4.706 1.00 44.20 O
ATOM 20 N1 G B 9 5.943 41.926 -5.112 1.00 38.73 N
ATOM 21 C2 G B 9 6.262 42.976 -5.937 1.00 39.70 C
ATOM 22 N2 G B 9 6.738 44.076 -5.339 1.00 41.06 N
ATOM 23 N3 G B 9 6.124 42.955 -7.253 1.00 39.65 N
ATOM 24 C4 G B 9 5.631 41.775 -7.687 1.00 36.21 C
ATOM 25 P U B 10 7.063 44.680 -13.610 1.00 35.72 P
ATOM 26 OP1 U B 10 7.777 45.873 -13.078 1.00 32.30 O
ATOM 27 OP2 U B 10 5.769 44.871 -14.306 1.00 34.86 O
ATOM 28 O5' U B 10 8.044 43.815 -14.517 1.00 31.19 O
TER
ATOM 2 P C A 8 -0.038 36.223 -9.214 1.00 41.31 P
ATOM 3 OP1 C A 8 0.870 35.063 -9.069 1.00 37.85 O
ATOM 4 OP2 C A 8 -0.178 37.165 -8.071 1.00 42.99 O
ATOM 5 O5' C A 8 0.323 37.022 -10.541 1.00 75.20 O
ATOM 6 C5' C A 8 -0.669 37.757 -11.239 1.00 75.24 C
ATOM 7 C4' C A 8 -0.213 39.159 -11.548 1.00 77.77 C
ATOM 8 O4' C A 8 -1.385 40.006 -11.618 1.00 80.19 O
ATOM 9 C3' C A 8 0.727 39.776 -10.512 1.00 82.96 C
ATOM 10 O3' C A 8 1.800 40.490 -11.139 1.00 87.75 O
ATOM 11 C2' C A 8 -0.155 40.748 -9.729 1.00 84.08 C
ATOM 12 O2' C A 8 0.500 41.930 -9.319 1.00 84.30 O
ATOM 13 C1' C A 8 -1.306 41.061 -10.683 1.00 81.17 C
ATOM 14 N1 C A 8 -2.607 41.146 -9.986 1.00 75.99 N
ATOM 15 C2 C A 8 -3.798 41.474 -10.635 1.00 77.00 C
ATOM 16 O2 C A 8 -3.785 41.711 -11.851 1.00 78.09 O
ATOM 17 N3 C A 8 -4.938 41.518 -9.900 1.00 74.34 N
ATOM 18 C4 C A 8 -4.924 41.258 -8.587 1.00 69.13 C
ATOM 19 N4 C A 8 -6.076 41.319 -7.910 1.00 61.69 N
ATOM 20 C5 C A 8 -3.719 40.919 -7.910 1.00 67.27 C
ATOM 21 C6 C A 8 -2.604 40.877 -8.645 1.00 69.13 C
ATOM 22 P G A 9 1.976 40.507 -12.735 1.00 45.64 P
ATOM 23 OP1 G A 9 2.282 39.127 -13.158 1.00 27.96 O
ATOM 24 OP2 G A 9 0.777 41.184 -13.297 1.00 45.08 O
ATOM 25 O5' G A 9 3.264 41.427 -12.927 1.00 48.85 O
TER
ATOM 1 O3' C B 8 1.800 40.490 -11.139 1.00 87.75 O
ATOM 2 P G B 9 1.976 40.507 -12.735 1.00 45.64 P
ATOM 3 OP1 G B 9 2.282 39.127 -13.158 1.00 27.96 O
ATOM 4 OP2 G B 9 0.777 41.184 -13.297 1.00 45.08 O
ATOM 5 O5' G B 9 3.264 41.427 -12.927 1.00 48.85 O
ATOM 6 C5' G B 9 3.217 42.812 -12.611 1.00 47.76 C
ATOM 7 C4' G B 9 4.474 43.287 -11.919 1.00 46.30 C
ATOM 8 O4' G B 9 4.412 42.968 -10.499 1.00 46.80 O
ATOM 9 C3' G B 9 5.791 42.699 -12.432 1.00 36.36 C
ATOM 10 O3' G B 9 6.797 43.706 -12.367 1.00 32.47 O
ATOM 11 C2' G B 9 6.107 41.640 -11.383 1.00 36.04 C
ATOM 12 O2' G B 9 7.475 41.300 -11.288 1.00 32.08 O
ATOM 13 C1' G B 9 5.618 42.340 -10.125 1.00 34.64 C
ATOM 14 N9 G B 9 5.366 41.452 -8.994 1.00 34.85 N
ATOM 15 C8 G B 9 4.885 40.171 -9.006 1.00 32.62 C
ATOM 16 N7 G B 9 4.811 39.669 -7.807 1.00 35.82 N
ATOM 17 C5 G B 9 5.278 40.666 -6.959 1.00 36.66 C
ATOM 18 C6 G B 9 5.432 40.703 -5.543 1.00 39.47 C
ATOM 19 O6 G B 9 5.179 39.825 -4.706 1.00 44.20 O
ATOM 20 N1 G B 9 5.943 41.926 -5.112 1.00 38.73 N
ATOM 21 C2 G B 9 6.262 42.976 -5.937 1.00 39.70 C
ATOM 22 N2 G B 9 6.738 44.076 -5.339 1.00 41.06 N
ATOM 23 N3 G B 9 6.124 42.955 -7.253 1.00 39.65 N
ATOM 24 C4 G B 9 5.631 41.775 -7.687 1.00 36.21 C
ATOM 25 P U B 10 7.063 44.680 -13.610 1.00 35.72 P
ATOM 26 OP1 U B 10 7.777 45.873 -13.078 1.00 32.30 O
ATOM 27 OP2 U B 10 5.769 44.871 -14.306 1.00 34.86 O
ATOM 28 O5' U B 10 8.044 43.815 -14.517 1.00 31.19 O
TER
Atoms:
C2: (-3.798,41.474,-10.635)
OP1: (0.870,35.063,-9.069)
OP2: (-0.178,37.165,-8.071)
C4: (-4.924,41.258,-8.587)
O5': (0.323,37.022,-10.541)
C3': (0.727,39.776,-10.512)
C1': (-1.306,41.061,-10.683)
O4': (-1.385,40.006,-11.618)
C5': (-0.669,37.757,-11.239)
P: (-0.038,36.223,-9.214)
O2: (-3.785,41.711,-11.851)
C4': (-0.213,39.159,-11.548)
C2': (-0.155,40.748,-9.729)
O2': (0.500,41.930,-9.319)
N1: (-2.607,41.146,-9.986)
N3: (-4.938,41.518,-9.900)
N4: (-6.076,41.319,-7.910)
C6: (-2.604,40.877,-8.645)
C5: (-3.719,40.919,-7.910)
O3': (1.800,40.490,-11.139)
OP1: (0.870,35.063,-9.069)
OP2: (-0.178,37.165,-8.071)
C4: (-4.924,41.258,-8.587)
O5': (0.323,37.022,-10.541)
C3': (0.727,39.776,-10.512)
C1': (-1.306,41.061,-10.683)
O4': (-1.385,40.006,-11.618)
C5': (-0.669,37.757,-11.239)
P: (-0.038,36.223,-9.214)
O2: (-3.785,41.711,-11.851)
C4': (-0.213,39.159,-11.548)
C2': (-0.155,40.748,-9.729)
O2': (0.500,41.930,-9.319)
N1: (-2.607,41.146,-9.986)
N3: (-4.938,41.518,-9.900)
N4: (-6.076,41.319,-7.910)
C6: (-2.604,40.877,-8.645)
C5: (-3.719,40.919,-7.910)
O3': (1.800,40.490,-11.139)
OP1: (2.282,39.127,-13.158)
OP2: (0.777,41.184,-13.297)
C3': (5.791,42.699,-12.432)
C1': (5.618,42.340,-10.125)
C5': (3.217,42.812,-12.611)
O6: (5.179,39.825,-4.706)
O4': (4.412,42.968,-10.499)
C8: (4.885,40.171,-9.006)
C2: (6.262,42.976,-5.937)
C6: (5.432,40.703,-5.543)
C5: (5.278,40.666,-6.959)
C4: (5.631,41.775,-7.687)
P: (1.976,40.507,-12.735)
C4': (4.474,43.287,-11.919)
C2': (6.107,41.640,-11.383)
O2': (7.475,41.300,-11.288)
N1: (5.943,41.926,-5.112)
N2: (6.738,44.076,-5.339)
N3: (6.124,42.955,-7.253)
N7: (4.811,39.669,-7.807)
N9: (5.366,41.452,-8.994)
O5': (3.264,41.427,-12.927)
O3': (6.797,43.706,-12.367)
OP2: (0.777,41.184,-13.297)
C3': (5.791,42.699,-12.432)
C1': (5.618,42.340,-10.125)
C5': (3.217,42.812,-12.611)
O6: (5.179,39.825,-4.706)
O4': (4.412,42.968,-10.499)
C8: (4.885,40.171,-9.006)
C2: (6.262,42.976,-5.937)
C6: (5.432,40.703,-5.543)
C5: (5.278,40.666,-6.959)
C4: (5.631,41.775,-7.687)
P: (1.976,40.507,-12.735)
C4': (4.474,43.287,-11.919)
C2': (6.107,41.640,-11.383)
O2': (7.475,41.300,-11.288)
N1: (5.943,41.926,-5.112)
N2: (6.738,44.076,-5.339)
N3: (6.124,42.955,-7.253)
N7: (4.811,39.669,-7.807)
N9: (5.366,41.452,-8.994)
O5': (3.264,41.427,-12.927)
O3': (6.797,43.706,-12.367)
Image (generated by PyMOL):