Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:E56:E57
Extra
PDB:
ATOM 1 O3' U A 55 4.281 9.693 117.469 1.00 68.20 O
ATOM 2 P A A 56 3.524 11.086 117.629 1.00 70.72 P
ATOM 3 OP1 A A 56 4.439 12.066 118.274 1.00 66.37 O
ATOM 4 OP2 A A 56 2.219 10.769 118.260 1.00 70.37 O
ATOM 5 O5' A A 56 3.260 11.551 116.132 1.00 58.26 O
ATOM 6 C5' A A 56 2.372 12.630 115.850 1.00 62.41 C
ATOM 7 C4' A A 56 1.542 12.289 114.653 1.00 59.27 C
ATOM 8 O4' A A 56 0.560 13.334 114.422 1.00 72.05 O
ATOM 9 C3' A A 56 2.385 12.253 113.399 1.00 59.71 C
ATOM 10 O3' A A 56 2.886 11.020 112.872 1.00 74.54 O
ATOM 11 C2' A A 56 2.211 13.587 112.683 1.00 52.30 C
ATOM 12 O2' A A 56 2.061 13.439 111.288 1.00 77.69 O
ATOM 13 C1' A A 56 0.878 14.067 113.253 1.00 65.53 C
ATOM 14 N9 A A 56 0.719 15.496 113.529 1.00 68.20 N
ATOM 15 C8 A A 56 -0.285 16.293 113.048 1.00 71.20 C
ATOM 16 N7 A A 56 -0.222 17.533 113.457 1.00 70.80 N
ATOM 17 C5 A A 56 0.907 17.561 114.257 1.00 71.90 C
ATOM 18 C6 A A 56 1.519 18.594 114.990 1.00 72.29 C
ATOM 19 N6 A A 56 1.058 19.847 115.029 1.00 56.76 N
ATOM 20 N1 A A 56 2.633 18.291 115.689 1.00 67.99 N
ATOM 21 C2 A A 56 3.090 17.038 115.648 1.00 70.27 C
ATOM 22 N3 A A 56 2.606 15.981 114.996 1.00 78.53 N
ATOM 23 C4 A A 56 1.501 16.314 114.309 1.00 73.21 C
ATOM 24 P U A 57 1.882 9.967 112.191 1.00 62.67 P
ATOM 25 OP1 U A 57 2.707 8.971 111.465 1.00 93.25 O
ATOM 26 OP2 U A 57 0.860 10.742 111.454 1.00 67.21 O
ATOM 27 O5' U A 57 1.201 9.216 113.429 1.00 69.22 O
TER
ATOM 1 O3' A B 56 2.886 11.020 112.872 1.00 74.54 O
ATOM 2 P U B 57 1.882 9.967 112.191 1.00 62.67 P
ATOM 3 OP1 U B 57 2.707 8.971 111.465 1.00 93.25 O
ATOM 4 OP2 U B 57 0.860 10.742 111.454 1.00 67.21 O
ATOM 5 O5' U B 57 1.201 9.216 113.429 1.00 69.22 O
ATOM 6 C5' U B 57 -0.075 8.582 113.292 1.00 75.00 C
ATOM 7 C4' U B 57 -0.319 7.559 114.401 1.00 73.43 C
ATOM 8 O4' U B 57 0.659 6.486 114.317 1.00 67.93 O
ATOM 9 C3' U B 57 -0.154 8.166 115.795 1.00 60.57 C
ATOM 10 O3' U B 57 -1.180 7.787 116.713 1.00 62.94 O
ATOM 11 C2' U B 57 1.249 7.785 116.255 1.00 55.02 C
ATOM 12 O2' U B 57 1.267 7.431 117.617 1.00 64.75 O
ATOM 13 C1' U B 57 1.488 6.508 115.454 1.00 60.09 C
ATOM 14 N1 U B 57 2.853 6.104 115.107 1.00 65.93 N
ATOM 15 C2 U B 57 3.518 5.346 116.047 1.00 72.28 C
ATOM 16 O2 U B 57 3.015 5.042 117.117 1.00 78.99 O
ATOM 17 N3 U B 57 4.784 4.955 115.694 1.00 68.25 N
ATOM 18 C4 U B 57 5.439 5.244 114.517 1.00 72.28 C
ATOM 19 O4 U B 57 6.586 4.829 114.348 1.00 65.41 O
ATOM 20 C5 U B 57 4.682 6.042 113.592 1.00 70.11 C
ATOM 21 C6 U B 57 3.444 6.437 113.915 1.00 67.10 C
ATOM 22 P A B 58 -2.548 8.620 116.797 1.00 74.08 P
ATOM 23 OP1 A B 58 -3.368 8.017 117.873 1.00 74.12 O
ATOM 24 OP2 A B 58 -3.106 8.733 115.425 1.00 73.57 O
ATOM 25 O5' A B 58 -2.089 10.063 117.279 1.00 67.65 O
TER
ATOM 2 P A A 56 3.524 11.086 117.629 1.00 70.72 P
ATOM 3 OP1 A A 56 4.439 12.066 118.274 1.00 66.37 O
ATOM 4 OP2 A A 56 2.219 10.769 118.260 1.00 70.37 O
ATOM 5 O5' A A 56 3.260 11.551 116.132 1.00 58.26 O
ATOM 6 C5' A A 56 2.372 12.630 115.850 1.00 62.41 C
ATOM 7 C4' A A 56 1.542 12.289 114.653 1.00 59.27 C
ATOM 8 O4' A A 56 0.560 13.334 114.422 1.00 72.05 O
ATOM 9 C3' A A 56 2.385 12.253 113.399 1.00 59.71 C
ATOM 10 O3' A A 56 2.886 11.020 112.872 1.00 74.54 O
ATOM 11 C2' A A 56 2.211 13.587 112.683 1.00 52.30 C
ATOM 12 O2' A A 56 2.061 13.439 111.288 1.00 77.69 O
ATOM 13 C1' A A 56 0.878 14.067 113.253 1.00 65.53 C
ATOM 14 N9 A A 56 0.719 15.496 113.529 1.00 68.20 N
ATOM 15 C8 A A 56 -0.285 16.293 113.048 1.00 71.20 C
ATOM 16 N7 A A 56 -0.222 17.533 113.457 1.00 70.80 N
ATOM 17 C5 A A 56 0.907 17.561 114.257 1.00 71.90 C
ATOM 18 C6 A A 56 1.519 18.594 114.990 1.00 72.29 C
ATOM 19 N6 A A 56 1.058 19.847 115.029 1.00 56.76 N
ATOM 20 N1 A A 56 2.633 18.291 115.689 1.00 67.99 N
ATOM 21 C2 A A 56 3.090 17.038 115.648 1.00 70.27 C
ATOM 22 N3 A A 56 2.606 15.981 114.996 1.00 78.53 N
ATOM 23 C4 A A 56 1.501 16.314 114.309 1.00 73.21 C
ATOM 24 P U A 57 1.882 9.967 112.191 1.00 62.67 P
ATOM 25 OP1 U A 57 2.707 8.971 111.465 1.00 93.25 O
ATOM 26 OP2 U A 57 0.860 10.742 111.454 1.00 67.21 O
ATOM 27 O5' U A 57 1.201 9.216 113.429 1.00 69.22 O
TER
ATOM 1 O3' A B 56 2.886 11.020 112.872 1.00 74.54 O
ATOM 2 P U B 57 1.882 9.967 112.191 1.00 62.67 P
ATOM 3 OP1 U B 57 2.707 8.971 111.465 1.00 93.25 O
ATOM 4 OP2 U B 57 0.860 10.742 111.454 1.00 67.21 O
ATOM 5 O5' U B 57 1.201 9.216 113.429 1.00 69.22 O
ATOM 6 C5' U B 57 -0.075 8.582 113.292 1.00 75.00 C
ATOM 7 C4' U B 57 -0.319 7.559 114.401 1.00 73.43 C
ATOM 8 O4' U B 57 0.659 6.486 114.317 1.00 67.93 O
ATOM 9 C3' U B 57 -0.154 8.166 115.795 1.00 60.57 C
ATOM 10 O3' U B 57 -1.180 7.787 116.713 1.00 62.94 O
ATOM 11 C2' U B 57 1.249 7.785 116.255 1.00 55.02 C
ATOM 12 O2' U B 57 1.267 7.431 117.617 1.00 64.75 O
ATOM 13 C1' U B 57 1.488 6.508 115.454 1.00 60.09 C
ATOM 14 N1 U B 57 2.853 6.104 115.107 1.00 65.93 N
ATOM 15 C2 U B 57 3.518 5.346 116.047 1.00 72.28 C
ATOM 16 O2 U B 57 3.015 5.042 117.117 1.00 78.99 O
ATOM 17 N3 U B 57 4.784 4.955 115.694 1.00 68.25 N
ATOM 18 C4 U B 57 5.439 5.244 114.517 1.00 72.28 C
ATOM 19 O4 U B 57 6.586 4.829 114.348 1.00 65.41 O
ATOM 20 C5 U B 57 4.682 6.042 113.592 1.00 70.11 C
ATOM 21 C6 U B 57 3.444 6.437 113.915 1.00 67.10 C
ATOM 22 P A B 58 -2.548 8.620 116.797 1.00 74.08 P
ATOM 23 OP1 A B 58 -3.368 8.017 117.873 1.00 74.12 O
ATOM 24 OP2 A B 58 -3.106 8.733 115.425 1.00 73.57 O
ATOM 25 O5' A B 58 -2.089 10.063 117.279 1.00 67.65 O
TER
Atoms:
OP1: (4.439,12.066,118.274)
OP2: (2.219,10.769,118.260)
C3': (2.385,12.253,113.399)
C1': (0.878,14.067,113.253)
C5': (2.372,12.630,115.850)
O4': (0.560,13.334,114.422)
C8: (-0.285,16.293,113.048)
O2': (2.061,13.439,111.288)
C6: (1.519,18.594,114.990)
C5: (0.907,17.561,114.257)
C4: (1.501,16.314,114.309)
P: (3.524,11.086,117.629)
C4': (1.542,12.289,114.653)
C2': (2.211,13.587,112.683)
C2: (3.090,17.038,115.648)
N1: (2.633,18.291,115.689)
N3: (2.606,15.981,114.996)
N6: (1.058,19.847,115.029)
N7: (-0.222,17.533,113.457)
N9: (0.719,15.496,113.529)
O5': (3.260,11.551,116.132)
O3': (2.886,11.020,112.872)
OP2: (2.219,10.769,118.260)
C3': (2.385,12.253,113.399)
C1': (0.878,14.067,113.253)
C5': (2.372,12.630,115.850)
O4': (0.560,13.334,114.422)
C8: (-0.285,16.293,113.048)
O2': (2.061,13.439,111.288)
C6: (1.519,18.594,114.990)
C5: (0.907,17.561,114.257)
C4: (1.501,16.314,114.309)
P: (3.524,11.086,117.629)
C4': (1.542,12.289,114.653)
C2': (2.211,13.587,112.683)
C2: (3.090,17.038,115.648)
N1: (2.633,18.291,115.689)
N3: (2.606,15.981,114.996)
N6: (1.058,19.847,115.029)
N7: (-0.222,17.533,113.457)
N9: (0.719,15.496,113.529)
O5': (3.260,11.551,116.132)
O3': (2.886,11.020,112.872)
C4: (5.439,5.244,114.517)
N3: (4.784,4.955,115.694)
OP1: (2.707,8.971,111.465)
OP2: (0.860,10.742,111.454)
C2: (3.518,5.346,116.047)
C1': (1.488,6.508,115.454)
C3': (-0.154,8.166,115.795)
O5': (1.201,9.216,113.429)
O4': (0.659,6.486,114.317)
C5': (-0.075,8.582,113.292)
P: (1.882,9.967,112.191)
C4': (-0.319,7.559,114.401)
C2': (1.249,7.785,116.255)
O2': (1.267,7.431,117.617)
N1: (2.853,6.104,115.107)
O4: (6.586,4.829,114.348)
O2: (3.015,5.042,117.117)
C6: (3.444,6.437,113.915)
C5: (4.682,6.042,113.592)
O3': (-1.180,7.787,116.713)
N3: (4.784,4.955,115.694)
OP1: (2.707,8.971,111.465)
OP2: (0.860,10.742,111.454)
C2: (3.518,5.346,116.047)
C1': (1.488,6.508,115.454)
C3': (-0.154,8.166,115.795)
O5': (1.201,9.216,113.429)
O4': (0.659,6.486,114.317)
C5': (-0.075,8.582,113.292)
P: (1.882,9.967,112.191)
C4': (-0.319,7.559,114.401)
C2': (1.249,7.785,116.255)
O2': (1.267,7.431,117.617)
N1: (2.853,6.104,115.107)
O4: (6.586,4.829,114.348)
O2: (3.015,5.042,117.117)
C6: (3.444,6.437,113.915)
C5: (4.682,6.042,113.592)
O3': (-1.180,7.787,116.713)
Image (generated by PyMOL):