Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12357:12358
Extra
PDB:
ATOM 1 O3' U A2356 8.932 -27.456 99.897 1.00 47.25 O
ATOM 2 P G A2357 9.797 -26.933 98.651 1.00 45.15 P
ATOM 3 OP1 G A2357 8.907 -26.170 97.738 1.00 45.03 O
ATOM 4 OP2 G A2357 10.505 -28.083 98.113 1.00 45.08 O
ATOM 5 O5' G A2357 10.827 -25.933 99.341 1.00 45.07 O
ATOM 6 C5' G A2357 10.368 -24.815 100.090 1.00 45.17 C
ATOM 7 C4' G A2357 11.521 -24.055 100.688 1.00 45.10 C
ATOM 8 O4' G A2357 12.118 -24.826 101.764 1.00 45.30 O
ATOM 9 C3' G A2357 12.657 -23.755 99.739 1.00 44.77 C
ATOM 10 O3' G A2357 12.449 -22.551 99.074 1.00 44.59 O
ATOM 11 C2' G A2357 13.851 -23.682 100.650 1.00 44.82 C
ATOM 12 O2' G A2357 13.901 -22.405 101.259 1.00 44.85 O
ATOM 13 C1' G A2357 13.504 -24.717 101.718 1.00 45.14 C
ATOM 14 N9 G A2357 14.054 -26.032 101.396 1.00 45.13 N
ATOM 15 C8 G A2357 13.513 -26.956 100.584 1.00 45.11 C
ATOM 16 N7 G A2357 14.246 -28.003 100.482 1.00 45.12 N
ATOM 17 C5 G A2357 15.336 -27.741 101.265 1.00 45.14 C
ATOM 18 C6 G A2357 16.475 -28.502 101.537 1.00 45.17 C
ATOM 19 O6 G A2357 16.715 -29.617 101.117 1.00 45.18 O
ATOM 20 N1 G A2357 17.351 -27.884 102.395 1.00 45.21 N
ATOM 21 C2 G A2357 17.139 -26.645 102.898 1.00 45.22 C
ATOM 22 N2 G A2357 18.066 -26.115 103.692 1.00 45.27 N
ATOM 23 N3 G A2357 16.086 -25.924 102.653 1.00 45.19 N
ATOM 24 C4 G A2357 15.227 -26.534 101.837 1.00 45.15 C
ATOM 25 P G A2358 11.947 -22.518 97.564 1.00 42.61 P
ATOM 26 OP1 G A2358 10.709 -21.746 97.562 1.00 42.70 O
ATOM 27 OP2 G A2358 11.934 -23.908 97.054 1.00 42.62 O
ATOM 28 O5' G A2358 13.074 -21.695 96.839 1.00 42.31 O
TER
ATOM 1 O3' G B2357 12.449 -22.551 99.074 1.00 44.59 O
ATOM 2 P G B2358 11.947 -22.518 97.564 1.00 42.61 P
ATOM 3 OP1 G B2358 10.709 -21.746 97.562 1.00 42.70 O
ATOM 4 OP2 G B2358 11.934 -23.908 97.054 1.00 42.62 O
ATOM 5 O5' G B2358 13.074 -21.695 96.839 1.00 42.31 O
ATOM 6 C5' G B2358 12.733 -20.736 95.866 1.00 42.13 C
ATOM 7 C4' G B2358 13.579 -19.512 96.001 1.00 42.00 C
ATOM 8 O4' G B2358 14.960 -19.878 95.737 1.00 41.83 O
ATOM 9 C3' G B2358 13.227 -18.375 95.054 1.00 41.83 C
ATOM 10 O3' G B2358 13.425 -17.114 95.700 1.00 41.87 O
ATOM 11 C2' G B2358 14.235 -18.573 93.928 1.00 41.55 C
ATOM 12 O2' G B2358 14.569 -17.413 93.204 1.00 41.36 O
ATOM 13 C1' G B2358 15.445 -19.140 94.651 1.00 41.57 C
ATOM 14 N9 G B2358 16.206 -20.049 93.847 1.00 41.41 N
ATOM 15 C8 G B2358 17.516 -20.171 94.034 1.00 41.32 C
ATOM 16 N7 G B2358 18.042 -21.044 93.258 1.00 41.20 N
ATOM 17 C5 G B2358 16.987 -21.540 92.540 1.00 41.22 C
ATOM 18 C6 G B2358 17.026 -22.523 91.555 1.00 41.14 C
ATOM 19 O6 G B2358 17.979 -23.175 91.134 1.00 41.04 O
ATOM 20 N1 G B2358 15.774 -22.739 91.065 1.00 41.21 N
ATOM 21 C2 G B2358 14.637 -22.142 91.486 1.00 41.34 C
ATOM 22 N2 G B2358 13.555 -22.576 90.829 1.00 41.39 N
ATOM 23 N3 G B2358 14.606 -21.210 92.422 1.00 41.42 N
ATOM 24 C4 G B2358 15.826 -20.948 92.901 1.00 41.35 C
ATOM 25 P G B2359 12.473 -16.641 96.932 1.00 41.30 P
ATOM 26 OP1 G B2359 11.524 -17.755 97.212 1.00 41.49 O
ATOM 27 OP2 G B2359 11.891 -15.307 96.602 1.00 41.28 O
ATOM 28 O5' G B2359 13.517 -16.482 98.139 1.00 41.40 O
TER
ATOM 2 P G A2357 9.797 -26.933 98.651 1.00 45.15 P
ATOM 3 OP1 G A2357 8.907 -26.170 97.738 1.00 45.03 O
ATOM 4 OP2 G A2357 10.505 -28.083 98.113 1.00 45.08 O
ATOM 5 O5' G A2357 10.827 -25.933 99.341 1.00 45.07 O
ATOM 6 C5' G A2357 10.368 -24.815 100.090 1.00 45.17 C
ATOM 7 C4' G A2357 11.521 -24.055 100.688 1.00 45.10 C
ATOM 8 O4' G A2357 12.118 -24.826 101.764 1.00 45.30 O
ATOM 9 C3' G A2357 12.657 -23.755 99.739 1.00 44.77 C
ATOM 10 O3' G A2357 12.449 -22.551 99.074 1.00 44.59 O
ATOM 11 C2' G A2357 13.851 -23.682 100.650 1.00 44.82 C
ATOM 12 O2' G A2357 13.901 -22.405 101.259 1.00 44.85 O
ATOM 13 C1' G A2357 13.504 -24.717 101.718 1.00 45.14 C
ATOM 14 N9 G A2357 14.054 -26.032 101.396 1.00 45.13 N
ATOM 15 C8 G A2357 13.513 -26.956 100.584 1.00 45.11 C
ATOM 16 N7 G A2357 14.246 -28.003 100.482 1.00 45.12 N
ATOM 17 C5 G A2357 15.336 -27.741 101.265 1.00 45.14 C
ATOM 18 C6 G A2357 16.475 -28.502 101.537 1.00 45.17 C
ATOM 19 O6 G A2357 16.715 -29.617 101.117 1.00 45.18 O
ATOM 20 N1 G A2357 17.351 -27.884 102.395 1.00 45.21 N
ATOM 21 C2 G A2357 17.139 -26.645 102.898 1.00 45.22 C
ATOM 22 N2 G A2357 18.066 -26.115 103.692 1.00 45.27 N
ATOM 23 N3 G A2357 16.086 -25.924 102.653 1.00 45.19 N
ATOM 24 C4 G A2357 15.227 -26.534 101.837 1.00 45.15 C
ATOM 25 P G A2358 11.947 -22.518 97.564 1.00 42.61 P
ATOM 26 OP1 G A2358 10.709 -21.746 97.562 1.00 42.70 O
ATOM 27 OP2 G A2358 11.934 -23.908 97.054 1.00 42.62 O
ATOM 28 O5' G A2358 13.074 -21.695 96.839 1.00 42.31 O
TER
ATOM 1 O3' G B2357 12.449 -22.551 99.074 1.00 44.59 O
ATOM 2 P G B2358 11.947 -22.518 97.564 1.00 42.61 P
ATOM 3 OP1 G B2358 10.709 -21.746 97.562 1.00 42.70 O
ATOM 4 OP2 G B2358 11.934 -23.908 97.054 1.00 42.62 O
ATOM 5 O5' G B2358 13.074 -21.695 96.839 1.00 42.31 O
ATOM 6 C5' G B2358 12.733 -20.736 95.866 1.00 42.13 C
ATOM 7 C4' G B2358 13.579 -19.512 96.001 1.00 42.00 C
ATOM 8 O4' G B2358 14.960 -19.878 95.737 1.00 41.83 O
ATOM 9 C3' G B2358 13.227 -18.375 95.054 1.00 41.83 C
ATOM 10 O3' G B2358 13.425 -17.114 95.700 1.00 41.87 O
ATOM 11 C2' G B2358 14.235 -18.573 93.928 1.00 41.55 C
ATOM 12 O2' G B2358 14.569 -17.413 93.204 1.00 41.36 O
ATOM 13 C1' G B2358 15.445 -19.140 94.651 1.00 41.57 C
ATOM 14 N9 G B2358 16.206 -20.049 93.847 1.00 41.41 N
ATOM 15 C8 G B2358 17.516 -20.171 94.034 1.00 41.32 C
ATOM 16 N7 G B2358 18.042 -21.044 93.258 1.00 41.20 N
ATOM 17 C5 G B2358 16.987 -21.540 92.540 1.00 41.22 C
ATOM 18 C6 G B2358 17.026 -22.523 91.555 1.00 41.14 C
ATOM 19 O6 G B2358 17.979 -23.175 91.134 1.00 41.04 O
ATOM 20 N1 G B2358 15.774 -22.739 91.065 1.00 41.21 N
ATOM 21 C2 G B2358 14.637 -22.142 91.486 1.00 41.34 C
ATOM 22 N2 G B2358 13.555 -22.576 90.829 1.00 41.39 N
ATOM 23 N3 G B2358 14.606 -21.210 92.422 1.00 41.42 N
ATOM 24 C4 G B2358 15.826 -20.948 92.901 1.00 41.35 C
ATOM 25 P G B2359 12.473 -16.641 96.932 1.00 41.30 P
ATOM 26 OP1 G B2359 11.524 -17.755 97.212 1.00 41.49 O
ATOM 27 OP2 G B2359 11.891 -15.307 96.602 1.00 41.28 O
ATOM 28 O5' G B2359 13.517 -16.482 98.139 1.00 41.40 O
TER
Atoms:
OP1: (8.907,-26.170,97.738)
OP2: (10.505,-28.083,98.113)
C3': (12.657,-23.755,99.739)
C1': (13.504,-24.717,101.718)
C5': (10.368,-24.815,100.090)
O6: (16.715,-29.617,101.117)
O4': (12.118,-24.826,101.764)
C8: (13.513,-26.956,100.584)
C2: (17.139,-26.645,102.898)
C6: (16.475,-28.502,101.537)
C5: (15.336,-27.741,101.265)
C4: (15.227,-26.534,101.837)
P: (9.797,-26.933,98.651)
C4': (11.521,-24.055,100.688)
C2': (13.851,-23.682,100.650)
O2': (13.901,-22.405,101.259)
N1: (17.351,-27.884,102.395)
N2: (18.066,-26.115,103.692)
N3: (16.086,-25.924,102.653)
N7: (14.246,-28.003,100.482)
N9: (14.054,-26.032,101.396)
O5': (10.827,-25.933,99.341)
O3': (12.449,-22.551,99.074)
OP2: (10.505,-28.083,98.113)
C3': (12.657,-23.755,99.739)
C1': (13.504,-24.717,101.718)
C5': (10.368,-24.815,100.090)
O6: (16.715,-29.617,101.117)
O4': (12.118,-24.826,101.764)
C8: (13.513,-26.956,100.584)
C2: (17.139,-26.645,102.898)
C6: (16.475,-28.502,101.537)
C5: (15.336,-27.741,101.265)
C4: (15.227,-26.534,101.837)
P: (9.797,-26.933,98.651)
C4': (11.521,-24.055,100.688)
C2': (13.851,-23.682,100.650)
O2': (13.901,-22.405,101.259)
N1: (17.351,-27.884,102.395)
N2: (18.066,-26.115,103.692)
N3: (16.086,-25.924,102.653)
N7: (14.246,-28.003,100.482)
N9: (14.054,-26.032,101.396)
O5': (10.827,-25.933,99.341)
O3': (12.449,-22.551,99.074)
OP1: (10.709,-21.746,97.562)
OP2: (11.934,-23.908,97.054)
C3': (13.227,-18.375,95.054)
C1': (15.445,-19.140,94.651)
C5': (12.733,-20.736,95.866)
O6: (17.979,-23.175,91.134)
O4': (14.960,-19.878,95.737)
C8: (17.516,-20.171,94.034)
C2: (14.637,-22.142,91.486)
C6: (17.026,-22.523,91.555)
C5: (16.987,-21.540,92.540)
C4: (15.826,-20.948,92.901)
P: (11.947,-22.518,97.564)
C4': (13.579,-19.512,96.001)
C2': (14.235,-18.573,93.928)
O2': (14.569,-17.413,93.204)
N1: (15.774,-22.739,91.065)
N2: (13.555,-22.576,90.829)
N3: (14.606,-21.210,92.422)
N7: (18.042,-21.044,93.258)
N9: (16.206,-20.049,93.847)
O5': (13.074,-21.695,96.839)
O3': (13.425,-17.114,95.700)
OP2: (11.934,-23.908,97.054)
C3': (13.227,-18.375,95.054)
C1': (15.445,-19.140,94.651)
C5': (12.733,-20.736,95.866)
O6: (17.979,-23.175,91.134)
O4': (14.960,-19.878,95.737)
C8: (17.516,-20.171,94.034)
C2: (14.637,-22.142,91.486)
C6: (17.026,-22.523,91.555)
C5: (16.987,-21.540,92.540)
C4: (15.826,-20.948,92.901)
P: (11.947,-22.518,97.564)
C4': (13.579,-19.512,96.001)
C2': (14.235,-18.573,93.928)
O2': (14.569,-17.413,93.204)
N1: (15.774,-22.739,91.065)
N2: (13.555,-22.576,90.829)
N3: (14.606,-21.210,92.422)
N7: (18.042,-21.044,93.258)
N9: (16.206,-20.049,93.847)
O5': (13.074,-21.695,96.839)
O3': (13.425,-17.114,95.700)
Image (generated by PyMOL):