Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2522:A2466
Extra
PDB:
ATOM 1 O3' U A2521 -105.178 -52.273 -50.760 1.00 0.01 O
ATOM 2 P G A2522 -105.526 -51.966 -52.289 1.00 2.37 P
ATOM 3 OP1 G A2522 -106.730 -52.760 -52.624 1.00 2.37 O
ATOM 4 OP2 G A2522 -104.290 -52.171 -53.099 1.00 2.37 O
ATOM 5 O5' G A2522 -105.891 -50.412 -52.212 1.00 2.37 O
ATOM 6 C5' G A2522 -104.879 -49.415 -52.303 1.00 2.37 C
ATOM 7 C4' G A2522 -104.891 -48.477 -51.118 1.00 2.37 C
ATOM 8 O4' G A2522 -106.224 -48.350 -50.605 1.00 2.37 O
ATOM 9 C3' G A2522 -104.041 -48.899 -49.936 1.00 2.37 C
ATOM 10 O3' G A2522 -102.715 -48.403 -50.049 1.00 2.37 O
ATOM 11 C2' G A2522 -104.786 -48.345 -48.714 1.00 2.37 C
ATOM 12 O2' G A2522 -104.272 -47.073 -48.342 1.00 2.37 O
ATOM 13 C1' G A2522 -106.210 -48.160 -49.217 1.00 2.37 C
ATOM 14 N9 G A2522 -107.150 -49.113 -48.662 1.00 2.46 N
ATOM 15 C8 G A2522 -106.986 -50.445 -48.728 1.00 2.46 C
ATOM 16 N7 G A2522 -108.026 -51.093 -48.289 1.00 2.46 N
ATOM 17 C5 G A2522 -108.943 -50.118 -47.976 1.00 2.46 C
ATOM 18 C6 G A2522 -110.247 -50.267 -47.477 1.00 2.46 C
ATOM 19 O6 G A2522 -110.864 -51.312 -47.183 1.00 2.46 O
ATOM 20 N1 G A2522 -110.832 -49.025 -47.307 1.00 2.46 N
ATOM 21 C2 G A2522 -110.249 -47.829 -47.578 1.00 2.46 C
ATOM 22 N2 G A2522 -111.024 -46.771 -47.319 1.00 2.46 N
ATOM 23 N3 G A2522 -109.029 -47.685 -48.050 1.00 2.46 N
ATOM 24 C4 G A2522 -108.432 -48.876 -48.226 1.00 2.46 C
ATOM 25 P A A2523 -101.467 -49.366 -49.881 1.00 0.01 P
ATOM 26 OP1 A A2523 -101.614 -50.009 -48.571 1.00 0.01 O
ATOM 27 OP2 A A2523 -100.253 -48.568 -50.154 1.00 0.01 O
ATOM 28 O5' A A2523 -101.684 -50.419 -51.046 1.00 0.01 O
TER
ATOM 1 O3' G B2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 2 P U B2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 3 OP1 U B2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 4 OP2 U B2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 5 O5' U B2466 -112.586 -42.274 -46.989 1.00 20.39 O
ATOM 6 C5' U B2466 -113.180 -41.183 -46.306 1.00 20.39 C
ATOM 7 C4' U B2466 -113.827 -40.209 -47.265 1.00 20.39 C
ATOM 8 O4' U B2466 -112.974 -40.016 -48.423 1.00 20.39 O
ATOM 9 C3' U B2466 -115.171 -40.627 -47.847 1.00 20.39 C
ATOM 10 O3' U B2466 -116.243 -40.318 -46.983 1.00 20.39 O
ATOM 11 C2' U B2466 -115.231 -39.853 -49.155 1.00 20.39 C
ATOM 12 O2' U B2466 -115.706 -38.530 -48.932 1.00 20.39 O
ATOM 13 C1' U B2466 -113.757 -39.781 -49.566 1.00 20.39 C
ATOM 14 N1 U B2466 -113.429 -40.782 -50.564 1.00 21.15 N
ATOM 15 C2 U B2466 -113.979 -40.547 -51.793 1.00 21.15 C
ATOM 16 O2 U B2466 -114.678 -39.569 -52.001 1.00 21.15 O
ATOM 17 N3 U B2466 -113.680 -41.491 -52.746 1.00 21.15 N
ATOM 18 C4 U B2466 -112.912 -42.625 -52.559 1.00 21.15 C
ATOM 19 O4 U B2466 -112.740 -43.392 -53.511 1.00 21.15 O
ATOM 20 C5 U B2466 -112.356 -42.776 -51.240 1.00 21.15 C
ATOM 21 C6 U B2466 -112.639 -41.864 -50.304 1.00 21.15 C
ATOM 22 P U B2467 -117.058 -41.478 -46.248 1.00 26.03 P
ATOM 23 OP1 U B2467 -118.252 -40.845 -45.628 1.00 26.03 O
ATOM 24 OP2 U B2467 -116.099 -42.200 -45.363 1.00 26.03 O
ATOM 25 O5' U B2467 -117.505 -42.405 -47.469 1.00 26.03 O
TER
ATOM 2 P G A2522 -105.526 -51.966 -52.289 1.00 2.37 P
ATOM 3 OP1 G A2522 -106.730 -52.760 -52.624 1.00 2.37 O
ATOM 4 OP2 G A2522 -104.290 -52.171 -53.099 1.00 2.37 O
ATOM 5 O5' G A2522 -105.891 -50.412 -52.212 1.00 2.37 O
ATOM 6 C5' G A2522 -104.879 -49.415 -52.303 1.00 2.37 C
ATOM 7 C4' G A2522 -104.891 -48.477 -51.118 1.00 2.37 C
ATOM 8 O4' G A2522 -106.224 -48.350 -50.605 1.00 2.37 O
ATOM 9 C3' G A2522 -104.041 -48.899 -49.936 1.00 2.37 C
ATOM 10 O3' G A2522 -102.715 -48.403 -50.049 1.00 2.37 O
ATOM 11 C2' G A2522 -104.786 -48.345 -48.714 1.00 2.37 C
ATOM 12 O2' G A2522 -104.272 -47.073 -48.342 1.00 2.37 O
ATOM 13 C1' G A2522 -106.210 -48.160 -49.217 1.00 2.37 C
ATOM 14 N9 G A2522 -107.150 -49.113 -48.662 1.00 2.46 N
ATOM 15 C8 G A2522 -106.986 -50.445 -48.728 1.00 2.46 C
ATOM 16 N7 G A2522 -108.026 -51.093 -48.289 1.00 2.46 N
ATOM 17 C5 G A2522 -108.943 -50.118 -47.976 1.00 2.46 C
ATOM 18 C6 G A2522 -110.247 -50.267 -47.477 1.00 2.46 C
ATOM 19 O6 G A2522 -110.864 -51.312 -47.183 1.00 2.46 O
ATOM 20 N1 G A2522 -110.832 -49.025 -47.307 1.00 2.46 N
ATOM 21 C2 G A2522 -110.249 -47.829 -47.578 1.00 2.46 C
ATOM 22 N2 G A2522 -111.024 -46.771 -47.319 1.00 2.46 N
ATOM 23 N3 G A2522 -109.029 -47.685 -48.050 1.00 2.46 N
ATOM 24 C4 G A2522 -108.432 -48.876 -48.226 1.00 2.46 C
ATOM 25 P A A2523 -101.467 -49.366 -49.881 1.00 0.01 P
ATOM 26 OP1 A A2523 -101.614 -50.009 -48.571 1.00 0.01 O
ATOM 27 OP2 A A2523 -100.253 -48.568 -50.154 1.00 0.01 O
ATOM 28 O5' A A2523 -101.684 -50.419 -51.046 1.00 0.01 O
TER
ATOM 1 O3' G B2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 2 P U B2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 3 OP1 U B2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 4 OP2 U B2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 5 O5' U B2466 -112.586 -42.274 -46.989 1.00 20.39 O
ATOM 6 C5' U B2466 -113.180 -41.183 -46.306 1.00 20.39 C
ATOM 7 C4' U B2466 -113.827 -40.209 -47.265 1.00 20.39 C
ATOM 8 O4' U B2466 -112.974 -40.016 -48.423 1.00 20.39 O
ATOM 9 C3' U B2466 -115.171 -40.627 -47.847 1.00 20.39 C
ATOM 10 O3' U B2466 -116.243 -40.318 -46.983 1.00 20.39 O
ATOM 11 C2' U B2466 -115.231 -39.853 -49.155 1.00 20.39 C
ATOM 12 O2' U B2466 -115.706 -38.530 -48.932 1.00 20.39 O
ATOM 13 C1' U B2466 -113.757 -39.781 -49.566 1.00 20.39 C
ATOM 14 N1 U B2466 -113.429 -40.782 -50.564 1.00 21.15 N
ATOM 15 C2 U B2466 -113.979 -40.547 -51.793 1.00 21.15 C
ATOM 16 O2 U B2466 -114.678 -39.569 -52.001 1.00 21.15 O
ATOM 17 N3 U B2466 -113.680 -41.491 -52.746 1.00 21.15 N
ATOM 18 C4 U B2466 -112.912 -42.625 -52.559 1.00 21.15 C
ATOM 19 O4 U B2466 -112.740 -43.392 -53.511 1.00 21.15 O
ATOM 20 C5 U B2466 -112.356 -42.776 -51.240 1.00 21.15 C
ATOM 21 C6 U B2466 -112.639 -41.864 -50.304 1.00 21.15 C
ATOM 22 P U B2467 -117.058 -41.478 -46.248 1.00 26.03 P
ATOM 23 OP1 U B2467 -118.252 -40.845 -45.628 1.00 26.03 O
ATOM 24 OP2 U B2467 -116.099 -42.200 -45.363 1.00 26.03 O
ATOM 25 O5' U B2467 -117.505 -42.405 -47.469 1.00 26.03 O
TER
Atoms:
OP1: (-106.730,-52.760,-52.624)
OP2: (-104.290,-52.171,-53.099)
C3': (-104.041,-48.899,-49.936)
C1': (-106.210,-48.160,-49.217)
C5': (-104.879,-49.415,-52.303)
O6: (-110.864,-51.312,-47.183)
O4': (-106.224,-48.350,-50.605)
C8: (-106.986,-50.445,-48.728)
C2: (-110.249,-47.829,-47.578)
C6: (-110.247,-50.267,-47.477)
C5: (-108.943,-50.118,-47.976)
C4: (-108.432,-48.876,-48.226)
P: (-105.526,-51.966,-52.289)
C4': (-104.891,-48.477,-51.118)
C2': (-104.786,-48.345,-48.714)
O2': (-104.272,-47.073,-48.342)
N1: (-110.832,-49.025,-47.307)
N2: (-111.024,-46.771,-47.319)
N3: (-109.029,-47.685,-48.050)
N7: (-108.026,-51.093,-48.289)
N9: (-107.150,-49.113,-48.662)
O5': (-105.891,-50.412,-52.212)
O3': (-102.715,-48.403,-50.049)
OP2: (-104.290,-52.171,-53.099)
C3': (-104.041,-48.899,-49.936)
C1': (-106.210,-48.160,-49.217)
C5': (-104.879,-49.415,-52.303)
O6: (-110.864,-51.312,-47.183)
O4': (-106.224,-48.350,-50.605)
C8: (-106.986,-50.445,-48.728)
C2: (-110.249,-47.829,-47.578)
C6: (-110.247,-50.267,-47.477)
C5: (-108.943,-50.118,-47.976)
C4: (-108.432,-48.876,-48.226)
P: (-105.526,-51.966,-52.289)
C4': (-104.891,-48.477,-51.118)
C2': (-104.786,-48.345,-48.714)
O2': (-104.272,-47.073,-48.342)
N1: (-110.832,-49.025,-47.307)
N2: (-111.024,-46.771,-47.319)
N3: (-109.029,-47.685,-48.050)
N7: (-108.026,-51.093,-48.289)
N9: (-107.150,-49.113,-48.662)
O5': (-105.891,-50.412,-52.212)
O3': (-102.715,-48.403,-50.049)
C4: (-112.912,-42.625,-52.559)
N3: (-113.680,-41.491,-52.746)
OP1: (-110.670,-43.693,-47.693)
OP2: (-110.485,-41.170,-47.801)
C2: (-113.979,-40.547,-51.793)
C1': (-113.757,-39.781,-49.566)
C3': (-115.171,-40.627,-47.847)
O5': (-112.586,-42.274,-46.989)
O4': (-112.974,-40.016,-48.423)
C5': (-113.180,-41.183,-46.306)
P: (-111.016,-42.377,-47.145)
C4': (-113.827,-40.209,-47.265)
C2': (-115.231,-39.853,-49.155)
O2': (-115.706,-38.530,-48.932)
N1: (-113.429,-40.782,-50.564)
O4: (-112.740,-43.392,-53.511)
O2: (-114.678,-39.569,-52.001)
C6: (-112.639,-41.864,-50.304)
C5: (-112.356,-42.776,-51.240)
O3': (-116.243,-40.318,-46.983)
N3: (-113.680,-41.491,-52.746)
OP1: (-110.670,-43.693,-47.693)
OP2: (-110.485,-41.170,-47.801)
C2: (-113.979,-40.547,-51.793)
C1': (-113.757,-39.781,-49.566)
C3': (-115.171,-40.627,-47.847)
O5': (-112.586,-42.274,-46.989)
O4': (-112.974,-40.016,-48.423)
C5': (-113.180,-41.183,-46.306)
P: (-111.016,-42.377,-47.145)
C4': (-113.827,-40.209,-47.265)
C2': (-115.231,-39.853,-49.155)
O2': (-115.706,-38.530,-48.932)
N1: (-113.429,-40.782,-50.564)
O4: (-112.740,-43.392,-53.511)
O2: (-114.678,-39.569,-52.001)
C6: (-112.639,-41.864,-50.304)
C5: (-112.356,-42.776,-51.240)
O3': (-116.243,-40.318,-46.983)
Image (generated by PyMOL):