Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A35:A6
Extra
PDB:
ATOM 1 O3' U A 34 -5.894 -24.985 26.735 1.00 28.62 O
ATOM 2 P G A 35 -5.798 -26.525 27.173 1.00 28.96 P
ATOM 3 OP1 G A 35 -7.163 -27.098 27.051 1.00 28.50 O
ATOM 4 OP2 G A 35 -5.120 -26.565 28.494 1.00 32.23 O
ATOM 5 O5' G A 35 -4.846 -27.144 26.058 1.00 31.59 O
ATOM 6 C5' G A 35 -5.071 -28.452 25.542 1.00 30.68 C
ATOM 7 C4' G A 35 -5.120 -28.450 24.034 1.00 33.38 C
ATOM 8 O4' G A 35 -3.846 -27.977 23.513 1.00 31.25 O
ATOM 9 C3' G A 35 -5.379 -29.809 23.377 1.00 31.37 C
ATOM 10 O3' G A 35 -6.241 -29.636 22.256 1.00 25.95 O
ATOM 11 C2' G A 35 -3.994 -30.228 22.890 1.00 34.02 C
ATOM 12 O2' G A 35 -4.005 -31.106 21.783 1.00 29.99 O
ATOM 13 C1' G A 35 -3.376 -28.882 22.534 1.00 34.55 C
ATOM 14 N9 G A 35 -1.909 -28.869 22.554 1.00 36.97 N
ATOM 15 C8 G A 35 -1.077 -29.294 23.561 1.00 37.01 C
ATOM 16 N7 G A 35 0.190 -29.160 23.272 1.00 37.09 N
ATOM 17 C5 G A 35 0.197 -28.615 21.995 1.00 37.99 C
ATOM 18 C6 G A 35 1.283 -28.254 21.156 1.00 37.41 C
ATOM 19 O6 G A 35 2.495 -28.342 21.385 1.00 36.45 O
ATOM 20 N1 G A 35 0.842 -27.738 19.942 1.00 40.48 N
ATOM 21 C2 G A 35 -0.475 -27.591 19.575 1.00 40.81 C
ATOM 22 N2 G A 35 -0.700 -27.072 18.355 1.00 33.55 N
ATOM 23 N3 G A 35 -1.496 -27.932 20.348 1.00 36.92 N
ATOM 24 C4 G A 35 -1.090 -28.432 21.535 1.00 37.41 C
ATOM 25 P G A 36 -7.820 -29.901 22.400 1.00 38.88 P
ATOM 26 OP1 G A 36 -8.379 -29.966 21.028 1.00 40.09 O
ATOM 27 OP2 G A 36 -8.351 -28.881 23.338 1.00 36.35 O
ATOM 28 O5' G A 36 -7.880 -31.340 23.078 1.00 38.14 O
TER
ATOM 1 O3' G B 5 -4.946 -27.551 17.575 1.00 35.83 O
ATOM 2 P U B 6 -4.438 -26.031 17.718 1.00 38.35 P
ATOM 3 OP1 U B 6 -5.431 -25.173 17.024 1.00 38.42 O
ATOM 4 OP2 U B 6 -3.025 -25.996 17.265 1.00 38.11 O
ATOM 5 O5' U B 6 -4.508 -25.778 19.288 1.00 36.34 O
ATOM 6 C5' U B 6 -5.718 -25.973 20.002 1.00 34.88 C
ATOM 7 C4' U B 6 -5.667 -25.336 21.368 1.00 31.69 C
ATOM 8 O4' U B 6 -4.462 -25.754 22.067 1.00 27.55 O
ATOM 9 C3' U B 6 -5.585 -23.817 21.403 1.00 28.36 C
ATOM 10 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 11 C2' U B 6 -5.029 -23.569 22.795 1.00 30.00 C
ATOM 12 O2' U B 6 -6.028 -23.784 23.780 1.00 32.11 O
ATOM 13 C1' U B 6 -4.005 -24.698 22.895 1.00 31.28 C
ATOM 14 N1 U B 6 -2.682 -24.256 22.417 1.00 27.06 N
ATOM 15 C2 U B 6 -2.014 -23.394 23.256 1.00 26.02 C
ATOM 16 O2 U B 6 -2.464 -23.045 24.332 1.00 27.18 O
ATOM 17 N3 U B 6 -0.798 -22.964 22.799 1.00 27.14 N
ATOM 18 C4 U B 6 -0.205 -23.296 21.602 1.00 27.62 C
ATOM 19 O4 U B 6 0.898 -22.821 21.339 1.00 28.93 O
ATOM 20 C5 U B 6 -0.967 -24.186 20.778 1.00 30.97 C
ATOM 21 C6 U B 6 -2.159 -24.623 21.200 1.00 30.30 C
ATOM 22 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 23 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 24 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 25 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
TER
ATOM 2 P G A 35 -5.798 -26.525 27.173 1.00 28.96 P
ATOM 3 OP1 G A 35 -7.163 -27.098 27.051 1.00 28.50 O
ATOM 4 OP2 G A 35 -5.120 -26.565 28.494 1.00 32.23 O
ATOM 5 O5' G A 35 -4.846 -27.144 26.058 1.00 31.59 O
ATOM 6 C5' G A 35 -5.071 -28.452 25.542 1.00 30.68 C
ATOM 7 C4' G A 35 -5.120 -28.450 24.034 1.00 33.38 C
ATOM 8 O4' G A 35 -3.846 -27.977 23.513 1.00 31.25 O
ATOM 9 C3' G A 35 -5.379 -29.809 23.377 1.00 31.37 C
ATOM 10 O3' G A 35 -6.241 -29.636 22.256 1.00 25.95 O
ATOM 11 C2' G A 35 -3.994 -30.228 22.890 1.00 34.02 C
ATOM 12 O2' G A 35 -4.005 -31.106 21.783 1.00 29.99 O
ATOM 13 C1' G A 35 -3.376 -28.882 22.534 1.00 34.55 C
ATOM 14 N9 G A 35 -1.909 -28.869 22.554 1.00 36.97 N
ATOM 15 C8 G A 35 -1.077 -29.294 23.561 1.00 37.01 C
ATOM 16 N7 G A 35 0.190 -29.160 23.272 1.00 37.09 N
ATOM 17 C5 G A 35 0.197 -28.615 21.995 1.00 37.99 C
ATOM 18 C6 G A 35 1.283 -28.254 21.156 1.00 37.41 C
ATOM 19 O6 G A 35 2.495 -28.342 21.385 1.00 36.45 O
ATOM 20 N1 G A 35 0.842 -27.738 19.942 1.00 40.48 N
ATOM 21 C2 G A 35 -0.475 -27.591 19.575 1.00 40.81 C
ATOM 22 N2 G A 35 -0.700 -27.072 18.355 1.00 33.55 N
ATOM 23 N3 G A 35 -1.496 -27.932 20.348 1.00 36.92 N
ATOM 24 C4 G A 35 -1.090 -28.432 21.535 1.00 37.41 C
ATOM 25 P G A 36 -7.820 -29.901 22.400 1.00 38.88 P
ATOM 26 OP1 G A 36 -8.379 -29.966 21.028 1.00 40.09 O
ATOM 27 OP2 G A 36 -8.351 -28.881 23.338 1.00 36.35 O
ATOM 28 O5' G A 36 -7.880 -31.340 23.078 1.00 38.14 O
TER
ATOM 1 O3' G B 5 -4.946 -27.551 17.575 1.00 35.83 O
ATOM 2 P U B 6 -4.438 -26.031 17.718 1.00 38.35 P
ATOM 3 OP1 U B 6 -5.431 -25.173 17.024 1.00 38.42 O
ATOM 4 OP2 U B 6 -3.025 -25.996 17.265 1.00 38.11 O
ATOM 5 O5' U B 6 -4.508 -25.778 19.288 1.00 36.34 O
ATOM 6 C5' U B 6 -5.718 -25.973 20.002 1.00 34.88 C
ATOM 7 C4' U B 6 -5.667 -25.336 21.368 1.00 31.69 C
ATOM 8 O4' U B 6 -4.462 -25.754 22.067 1.00 27.55 O
ATOM 9 C3' U B 6 -5.585 -23.817 21.403 1.00 28.36 C
ATOM 10 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 11 C2' U B 6 -5.029 -23.569 22.795 1.00 30.00 C
ATOM 12 O2' U B 6 -6.028 -23.784 23.780 1.00 32.11 O
ATOM 13 C1' U B 6 -4.005 -24.698 22.895 1.00 31.28 C
ATOM 14 N1 U B 6 -2.682 -24.256 22.417 1.00 27.06 N
ATOM 15 C2 U B 6 -2.014 -23.394 23.256 1.00 26.02 C
ATOM 16 O2 U B 6 -2.464 -23.045 24.332 1.00 27.18 O
ATOM 17 N3 U B 6 -0.798 -22.964 22.799 1.00 27.14 N
ATOM 18 C4 U B 6 -0.205 -23.296 21.602 1.00 27.62 C
ATOM 19 O4 U B 6 0.898 -22.821 21.339 1.00 28.93 O
ATOM 20 C5 U B 6 -0.967 -24.186 20.778 1.00 30.97 C
ATOM 21 C6 U B 6 -2.159 -24.623 21.200 1.00 30.30 C
ATOM 22 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 23 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 24 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 25 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
TER
Atoms:
OP1: (-7.163,-27.098,27.051)
OP2: (-5.120,-26.565,28.494)
C3': (-5.379,-29.809,23.377)
C1': (-3.376,-28.882,22.534)
C5': (-5.071,-28.452,25.542)
O6: (2.495,-28.342,21.385)
O4': (-3.846,-27.977,23.513)
C8: (-1.077,-29.294,23.561)
C2: (-0.475,-27.591,19.575)
C6: (1.283,-28.254,21.156)
C5: (0.197,-28.615,21.995)
C4: (-1.090,-28.432,21.535)
P: (-5.798,-26.525,27.173)
C4': (-5.120,-28.450,24.034)
C2': (-3.994,-30.228,22.890)
O2': (-4.005,-31.106,21.783)
N1: (0.842,-27.738,19.942)
N2: (-0.700,-27.072,18.355)
N3: (-1.496,-27.932,20.348)
N7: (0.190,-29.160,23.272)
N9: (-1.909,-28.869,22.554)
O5': (-4.846,-27.144,26.058)
O3': (-6.241,-29.636,22.256)
OP2: (-5.120,-26.565,28.494)
C3': (-5.379,-29.809,23.377)
C1': (-3.376,-28.882,22.534)
C5': (-5.071,-28.452,25.542)
O6: (2.495,-28.342,21.385)
O4': (-3.846,-27.977,23.513)
C8: (-1.077,-29.294,23.561)
C2: (-0.475,-27.591,19.575)
C6: (1.283,-28.254,21.156)
C5: (0.197,-28.615,21.995)
C4: (-1.090,-28.432,21.535)
P: (-5.798,-26.525,27.173)
C4': (-5.120,-28.450,24.034)
C2': (-3.994,-30.228,22.890)
O2': (-4.005,-31.106,21.783)
N1: (0.842,-27.738,19.942)
N2: (-0.700,-27.072,18.355)
N3: (-1.496,-27.932,20.348)
N7: (0.190,-29.160,23.272)
N9: (-1.909,-28.869,22.554)
O5': (-4.846,-27.144,26.058)
O3': (-6.241,-29.636,22.256)
C4: (-0.205,-23.296,21.602)
N3: (-0.798,-22.964,22.799)
OP1: (-5.431,-25.173,17.024)
OP2: (-3.025,-25.996,17.265)
C2: (-2.014,-23.394,23.256)
C1': (-4.005,-24.698,22.895)
C3': (-5.585,-23.817,21.403)
O5': (-4.508,-25.778,19.288)
O4': (-4.462,-25.754,22.067)
C5': (-5.718,-25.973,20.002)
P: (-4.438,-26.031,17.718)
C4': (-5.667,-25.336,21.368)
C2': (-5.029,-23.569,22.795)
O2': (-6.028,-23.784,23.780)
N1: (-2.682,-24.256,22.417)
O4: (0.898,-22.821,21.339)
O2: (-2.464,-23.045,24.332)
C6: (-2.159,-24.623,21.200)
C5: (-0.967,-24.186,20.778)
O3': (-6.825,-23.178,21.162)
N3: (-0.798,-22.964,22.799)
OP1: (-5.431,-25.173,17.024)
OP2: (-3.025,-25.996,17.265)
C2: (-2.014,-23.394,23.256)
C1': (-4.005,-24.698,22.895)
C3': (-5.585,-23.817,21.403)
O5': (-4.508,-25.778,19.288)
O4': (-4.462,-25.754,22.067)
C5': (-5.718,-25.973,20.002)
P: (-4.438,-26.031,17.718)
C4': (-5.667,-25.336,21.368)
C2': (-5.029,-23.569,22.795)
O2': (-6.028,-23.784,23.780)
N1: (-2.682,-24.256,22.417)
O4: (0.898,-22.821,21.339)
O2: (-2.464,-23.045,24.332)
C6: (-2.159,-24.623,21.200)
C5: (-0.967,-24.186,20.778)
O3': (-6.825,-23.178,21.162)
Image (generated by PyMOL):