Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A35:A6
Extra
PDB:
ATOM 1 O3' U A 34 7.775 -24.625 27.259 1.00 31.18 O
ATOM 2 P G A 35 7.745 -26.188 27.641 1.00 33.52 P
ATOM 3 OP1 G A 35 6.343 -26.647 27.485 1.00 36.83 O
ATOM 4 OP2 G A 35 8.399 -26.333 28.964 1.00 38.22 O
ATOM 5 O5' G A 35 8.659 -26.837 26.515 1.00 40.15 O
ATOM 6 C5' G A 35 8.393 -28.144 26.013 1.00 38.16 C
ATOM 7 C4' G A 35 8.470 -28.178 24.508 1.00 32.11 C
ATOM 8 O4' G A 35 9.792 -27.745 24.086 1.00 30.41 O
ATOM 9 C3' G A 35 8.230 -29.550 23.859 1.00 31.60 C
ATOM 10 O3' G A 35 7.344 -29.410 22.749 1.00 30.33 O
ATOM 11 C2' G A 35 9.617 -29.953 23.351 1.00 31.19 C
ATOM 12 O2' G A 35 9.600 -30.770 22.199 1.00 31.36 O
ATOM 13 C1' G A 35 10.252 -28.597 23.065 1.00 29.81 C
ATOM 14 N9 G A 35 11.721 -28.601 23.072 1.00 29.72 N
ATOM 15 C8 G A 35 12.563 -29.121 24.029 1.00 30.77 C
ATOM 16 N7 G A 35 13.828 -28.978 23.727 1.00 29.43 N
ATOM 17 C5 G A 35 13.834 -28.341 22.497 1.00 31.99 C
ATOM 18 C6 G A 35 14.918 -27.928 21.671 1.00 33.59 C
ATOM 19 O6 G A 35 16.138 -28.047 21.864 1.00 30.99 O
ATOM 20 N1 G A 35 14.462 -27.311 20.509 1.00 30.01 N
ATOM 21 C2 G A 35 13.143 -27.123 20.180 1.00 30.87 C
ATOM 22 N2 G A 35 12.907 -26.510 19.011 1.00 29.87 N
ATOM 23 N3 G A 35 12.128 -27.503 20.937 1.00 31.23 N
ATOM 24 C4 G A 35 12.540 -28.104 22.076 1.00 31.63 C
ATOM 25 P G A 36 5.766 -29.660 22.936 1.00 43.12 P
ATOM 26 OP1 G A 36 5.155 -29.620 21.584 1.00 40.83 O
ATOM 27 OP2 G A 36 5.291 -28.696 23.965 1.00 46.36 O
ATOM 28 O5' G A 36 5.698 -31.142 23.514 1.00 34.52 O
TER
ATOM 1 O3' G B 5 8.664 -27.239 18.013 1.00 33.73 O
ATOM 2 P U B 6 9.147 -25.717 18.220 1.00 38.88 P
ATOM 3 OP1 U B 6 8.106 -24.847 17.626 1.00 38.83 O
ATOM 4 OP2 U B 6 10.531 -25.623 17.702 1.00 33.83 O
ATOM 5 O5' U B 6 9.146 -25.553 19.808 1.00 36.63 O
ATOM 6 C5' U B 6 7.950 -25.723 20.554 1.00 33.68 C
ATOM 7 C4' U B 6 8.040 -25.094 21.924 1.00 33.75 C
ATOM 8 O4' U B 6 9.274 -25.496 22.582 1.00 33.88 O
ATOM 9 C3' U B 6 8.105 -23.575 21.982 1.00 33.75 C
ATOM 10 O3' U B 6 6.865 -22.931 21.736 1.00 33.69 O
ATOM 11 C2' U B 6 8.644 -23.356 23.384 1.00 33.91 C
ATOM 12 O2' U B 6 7.648 -23.646 24.355 1.00 33.98 O
ATOM 13 C1' U B 6 9.705 -24.453 23.443 1.00 34.36 C
ATOM 14 N1 U B 6 11.008 -23.951 22.968 1.00 34.45 N
ATOM 15 C2 U B 6 11.699 -23.144 23.848 1.00 34.78 C
ATOM 16 O2 U B 6 11.286 -22.876 24.964 1.00 35.22 O
ATOM 17 N3 U B 6 12.891 -22.661 23.377 1.00 36.86 N
ATOM 18 C4 U B 6 13.443 -22.893 22.136 1.00 37.59 C
ATOM 19 O4 U B 6 14.530 -22.388 21.864 1.00 34.42 O
ATOM 20 C5 U B 6 12.662 -23.731 21.277 1.00 37.73 C
ATOM 21 C6 U B 6 11.490 -24.213 21.707 1.00 35.97 C
ATOM 22 P A B 7 6.841 -21.427 21.155 1.00 33.67 P
ATOM 23 OP1 A B 7 5.420 -21.066 20.937 1.00 33.64 O
ATOM 24 OP2 A B 7 7.770 -21.384 20.004 1.00 35.86 O
ATOM 25 O5' A B 7 7.439 -20.570 22.354 1.00 35.95 O
TER
ATOM 2 P G A 35 7.745 -26.188 27.641 1.00 33.52 P
ATOM 3 OP1 G A 35 6.343 -26.647 27.485 1.00 36.83 O
ATOM 4 OP2 G A 35 8.399 -26.333 28.964 1.00 38.22 O
ATOM 5 O5' G A 35 8.659 -26.837 26.515 1.00 40.15 O
ATOM 6 C5' G A 35 8.393 -28.144 26.013 1.00 38.16 C
ATOM 7 C4' G A 35 8.470 -28.178 24.508 1.00 32.11 C
ATOM 8 O4' G A 35 9.792 -27.745 24.086 1.00 30.41 O
ATOM 9 C3' G A 35 8.230 -29.550 23.859 1.00 31.60 C
ATOM 10 O3' G A 35 7.344 -29.410 22.749 1.00 30.33 O
ATOM 11 C2' G A 35 9.617 -29.953 23.351 1.00 31.19 C
ATOM 12 O2' G A 35 9.600 -30.770 22.199 1.00 31.36 O
ATOM 13 C1' G A 35 10.252 -28.597 23.065 1.00 29.81 C
ATOM 14 N9 G A 35 11.721 -28.601 23.072 1.00 29.72 N
ATOM 15 C8 G A 35 12.563 -29.121 24.029 1.00 30.77 C
ATOM 16 N7 G A 35 13.828 -28.978 23.727 1.00 29.43 N
ATOM 17 C5 G A 35 13.834 -28.341 22.497 1.00 31.99 C
ATOM 18 C6 G A 35 14.918 -27.928 21.671 1.00 33.59 C
ATOM 19 O6 G A 35 16.138 -28.047 21.864 1.00 30.99 O
ATOM 20 N1 G A 35 14.462 -27.311 20.509 1.00 30.01 N
ATOM 21 C2 G A 35 13.143 -27.123 20.180 1.00 30.87 C
ATOM 22 N2 G A 35 12.907 -26.510 19.011 1.00 29.87 N
ATOM 23 N3 G A 35 12.128 -27.503 20.937 1.00 31.23 N
ATOM 24 C4 G A 35 12.540 -28.104 22.076 1.00 31.63 C
ATOM 25 P G A 36 5.766 -29.660 22.936 1.00 43.12 P
ATOM 26 OP1 G A 36 5.155 -29.620 21.584 1.00 40.83 O
ATOM 27 OP2 G A 36 5.291 -28.696 23.965 1.00 46.36 O
ATOM 28 O5' G A 36 5.698 -31.142 23.514 1.00 34.52 O
TER
ATOM 1 O3' G B 5 8.664 -27.239 18.013 1.00 33.73 O
ATOM 2 P U B 6 9.147 -25.717 18.220 1.00 38.88 P
ATOM 3 OP1 U B 6 8.106 -24.847 17.626 1.00 38.83 O
ATOM 4 OP2 U B 6 10.531 -25.623 17.702 1.00 33.83 O
ATOM 5 O5' U B 6 9.146 -25.553 19.808 1.00 36.63 O
ATOM 6 C5' U B 6 7.950 -25.723 20.554 1.00 33.68 C
ATOM 7 C4' U B 6 8.040 -25.094 21.924 1.00 33.75 C
ATOM 8 O4' U B 6 9.274 -25.496 22.582 1.00 33.88 O
ATOM 9 C3' U B 6 8.105 -23.575 21.982 1.00 33.75 C
ATOM 10 O3' U B 6 6.865 -22.931 21.736 1.00 33.69 O
ATOM 11 C2' U B 6 8.644 -23.356 23.384 1.00 33.91 C
ATOM 12 O2' U B 6 7.648 -23.646 24.355 1.00 33.98 O
ATOM 13 C1' U B 6 9.705 -24.453 23.443 1.00 34.36 C
ATOM 14 N1 U B 6 11.008 -23.951 22.968 1.00 34.45 N
ATOM 15 C2 U B 6 11.699 -23.144 23.848 1.00 34.78 C
ATOM 16 O2 U B 6 11.286 -22.876 24.964 1.00 35.22 O
ATOM 17 N3 U B 6 12.891 -22.661 23.377 1.00 36.86 N
ATOM 18 C4 U B 6 13.443 -22.893 22.136 1.00 37.59 C
ATOM 19 O4 U B 6 14.530 -22.388 21.864 1.00 34.42 O
ATOM 20 C5 U B 6 12.662 -23.731 21.277 1.00 37.73 C
ATOM 21 C6 U B 6 11.490 -24.213 21.707 1.00 35.97 C
ATOM 22 P A B 7 6.841 -21.427 21.155 1.00 33.67 P
ATOM 23 OP1 A B 7 5.420 -21.066 20.937 1.00 33.64 O
ATOM 24 OP2 A B 7 7.770 -21.384 20.004 1.00 35.86 O
ATOM 25 O5' A B 7 7.439 -20.570 22.354 1.00 35.95 O
TER
Atoms:
OP1: (6.343,-26.647,27.485)
OP2: (8.399,-26.333,28.964)
C3': (8.230,-29.550,23.859)
C1': (10.252,-28.597,23.065)
C5': (8.393,-28.144,26.013)
O6: (16.138,-28.047,21.864)
O4': (9.792,-27.745,24.086)
C8: (12.563,-29.121,24.029)
C2: (13.143,-27.123,20.180)
C6: (14.918,-27.928,21.671)
C5: (13.834,-28.341,22.497)
C4: (12.540,-28.104,22.076)
P: (7.745,-26.188,27.641)
C4': (8.470,-28.178,24.508)
C2': (9.617,-29.953,23.351)
O2': (9.600,-30.770,22.199)
N1: (14.462,-27.311,20.509)
N2: (12.907,-26.510,19.011)
N3: (12.128,-27.503,20.937)
N7: (13.828,-28.978,23.727)
N9: (11.721,-28.601,23.072)
O5': (8.659,-26.837,26.515)
O3': (7.344,-29.410,22.749)
OP2: (8.399,-26.333,28.964)
C3': (8.230,-29.550,23.859)
C1': (10.252,-28.597,23.065)
C5': (8.393,-28.144,26.013)
O6: (16.138,-28.047,21.864)
O4': (9.792,-27.745,24.086)
C8: (12.563,-29.121,24.029)
C2: (13.143,-27.123,20.180)
C6: (14.918,-27.928,21.671)
C5: (13.834,-28.341,22.497)
C4: (12.540,-28.104,22.076)
P: (7.745,-26.188,27.641)
C4': (8.470,-28.178,24.508)
C2': (9.617,-29.953,23.351)
O2': (9.600,-30.770,22.199)
N1: (14.462,-27.311,20.509)
N2: (12.907,-26.510,19.011)
N3: (12.128,-27.503,20.937)
N7: (13.828,-28.978,23.727)
N9: (11.721,-28.601,23.072)
O5': (8.659,-26.837,26.515)
O3': (7.344,-29.410,22.749)
C4: (13.443,-22.893,22.136)
N3: (12.891,-22.661,23.377)
OP1: (8.106,-24.847,17.626)
OP2: (10.531,-25.623,17.702)
C2: (11.699,-23.144,23.848)
C1': (9.705,-24.453,23.443)
C3': (8.105,-23.575,21.982)
O5': (9.146,-25.553,19.808)
O4': (9.274,-25.496,22.582)
C5': (7.950,-25.723,20.554)
P: (9.147,-25.717,18.220)
C4': (8.040,-25.094,21.924)
C2': (8.644,-23.356,23.384)
O2': (7.648,-23.646,24.355)
N1: (11.008,-23.951,22.968)
O4: (14.530,-22.388,21.864)
O2: (11.286,-22.876,24.964)
C6: (11.490,-24.213,21.707)
C5: (12.662,-23.731,21.277)
O3': (6.865,-22.931,21.736)
N3: (12.891,-22.661,23.377)
OP1: (8.106,-24.847,17.626)
OP2: (10.531,-25.623,17.702)
C2: (11.699,-23.144,23.848)
C1': (9.705,-24.453,23.443)
C3': (8.105,-23.575,21.982)
O5': (9.146,-25.553,19.808)
O4': (9.274,-25.496,22.582)
C5': (7.950,-25.723,20.554)
P: (9.147,-25.717,18.220)
C4': (8.040,-25.094,21.924)
C2': (8.644,-23.356,23.384)
O2': (7.648,-23.646,24.355)
N1: (11.008,-23.951,22.968)
O4: (14.530,-22.388,21.864)
O2: (11.286,-22.876,24.964)
C6: (11.490,-24.213,21.707)
C5: (12.662,-23.731,21.277)
O3': (6.865,-22.931,21.736)
Image (generated by PyMOL):